Wall clock time and date at job start Tue Mar 31 2020 05:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47355 * 2 1 4 4 C 1.50700 * 109.46833 * 120.00060 * 2 1 3 5 5 O 1.21284 * 119.99928 * 119.99959 * 4 2 1 6 6 N 1.34773 * 120.00069 * 299.99729 * 4 2 1 7 7 C 1.46508 * 120.00084 * 180.02562 * 6 4 2 8 8 C 1.53496 * 114.20706 * 204.99914 * 7 6 4 9 9 N 1.47062 * 87.98485 * 220.14769 * 8 7 6 10 10 C 1.36939 * 136.05593 * 207.08750 * 9 8 7 11 11 H 1.08008 * 119.99868 * 7.82597 * 10 9 8 12 12 C 1.38808 * 120.00203 * 187.82575 * 10 9 8 13 13 N 1.31618 * 119.99998 * 195.17052 * 12 10 9 14 14 Si 1.86797 * 119.99840 * 15.16580 * 12 10 9 15 15 H 1.48503 * 109.47450 * 270.00422 * 14 12 10 16 16 H 1.48503 * 109.47360 * 30.00092 * 14 12 10 17 17 H 1.48498 * 109.47360 * 150.00270 * 14 12 10 18 18 C 1.47059 * 87.88616 * 27.34176 * 9 8 7 19 19 C 1.52997 * 109.46839 * 239.99690 * 2 1 3 20 20 C 1.53186 * 109.54156 * 179.82269 * 19 2 1 21 21 C 1.53106 * 109.15418 * 183.24401 * 20 19 2 22 22 O 1.42899 * 109.48704 * 57.47917 * 21 20 19 23 23 C 1.42900 * 114.09509 * 298.88359 * 22 21 20 24 24 C 1.53087 * 109.41632 * 61.16055 * 23 22 21 25 25 H 1.09004 * 109.47038 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47330 * 300.00102 * 1 2 3 27 27 H 1.08996 * 109.46982 * 60.00178 * 1 2 3 28 28 H 0.96994 * 120.00469 * 0.02562 * 6 4 2 29 29 H 1.09001 * 113.27729 * 338.06767 * 7 6 4 30 30 H 1.09008 * 113.46447 * 105.36204 * 8 7 6 31 31 H 1.09003 * 113.46673 * 334.93103 * 8 7 6 32 32 H 0.96995 * 120.00365 * 354.90363 * 13 12 10 33 33 H 1.08997 * 113.47135 * 87.43718 * 18 9 8 34 34 H 1.09007 * 113.47198 * 217.88025 * 18 9 8 35 35 H 1.09004 * 109.55025 * 300.00230 * 19 2 1 36 36 H 1.08997 * 109.52509 * 303.06179 * 20 19 2 37 37 H 1.09003 * 109.52132 * 63.25203 * 20 19 2 38 38 H 1.08999 * 109.40512 * 297.48906 * 21 20 19 39 39 H 1.09006 * 109.47755 * 177.50632 * 21 20 19 40 40 H 1.09005 * 109.48269 * 301.17772 * 23 22 21 41 41 H 1.09004 * 109.48157 * 181.14417 * 23 22 21 42 42 H 1.09003 * 109.52346 * 182.48045 * 24 23 22 43 43 H 1.08999 * 109.57651 * 62.32889 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4545 7 6 2.1955 -0.9403 3.6508 8 6 1.3241 -0.7329 4.8973 9 7 2.5633 -0.6255 5.6820 10 6 2.9331 -0.8643 6.9787 11 1 2.2431 -1.3437 7.6574 12 6 4.1946 -0.4903 7.4208 13 7 4.6655 -0.9725 8.5513 14 14 5.2241 0.6972 6.4111 15 1 6.0596 -0.0660 5.4495 16 1 4.3289 1.6187 5.6663 17 1 6.1022 1.4830 7.3148 18 6 3.2290 -0.1426 4.4628 19 6 2.0399 -0.7213 -1.2492 20 6 3.5718 -0.7184 -1.2531 21 6 4.0721 -1.3700 -2.5452 22 8 3.5401 -0.6676 -3.6702 23 6 2.1131 -0.6792 -3.7437 24 6 1.5340 0.0020 -2.5010 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.1488 0.5385 2.5436 29 1 2.4719 -1.9784 3.4663 30 1 0.7210 -1.6035 5.1552 31 1 0.7443 0.1899 4.8730 32 1 4.1038 -1.5300 9.1121 33 1 3.1515 0.9357 4.3239 34 1 4.2490 -0.5103 4.3504 35 1 1.6772 -1.7492 -1.2504 36 1 3.9343 0.3081 -1.2003 37 1 3.9393 -1.2801 -0.3943 38 1 3.7445 -2.4091 -2.5771 39 1 5.1610 -1.3310 -2.5739 40 1 1.7598 -1.7093 -3.7914 41 1 1.7906 -0.1425 -4.6360 42 1 0.4455 -0.0447 -2.5338 43 1 1.8530 1.0439 -2.4736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031497943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:45 Heat of formation + Delta-G solvation = -35.719478 kcal Electronic energy + Delta-G solvation = -22836.327420 eV Core-core repulsion = 19497.111297 eV Total energy + Delta-G solvation = -3339.216122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50834 -39.23334 -38.07518 -35.36390 -33.86429 -32.26135 -31.29755 -30.96128 -27.74820 -25.83905 -25.34172 -24.16829 -23.33360 -22.03620 -20.42594 -20.13273 -19.56099 -17.49381 -17.07289 -16.55223 -16.13314 -16.05367 -15.49471 -15.08557 -14.67346 -14.58749 -14.12206 -13.90929 -13.63726 -13.40799 -13.30637 -12.57107 -12.46753 -12.09959 -12.00954 -11.96028 -11.81649 -11.55094 -11.52356 -11.36260 -11.03030 -10.78783 -10.65794 -10.41223 -10.21238 -9.79700 -9.75745 -9.39165 -9.26788 -8.79184 -8.57710 -7.25118 -6.35388 -3.28441 2.71184 3.25913 3.41932 3.46253 3.61015 3.71652 4.34098 4.45197 4.55188 4.56812 4.75176 4.82431 4.87735 4.97936 5.05960 5.08127 5.12550 5.22452 5.30794 5.34417 5.38606 5.50211 5.58674 5.60000 5.65659 5.71274 5.72419 5.82136 5.91852 5.96292 6.11575 6.18374 6.21573 6.25508 6.34329 6.46034 6.96346 7.03645 7.04742 7.66086 8.19559 8.35960 8.92629 9.45428 10.30050 11.14852 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029082 B = 0.003694 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.555039 B = 7577.665994 C = 8133.974043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 H 0.096 0.904 4 C 0.516 3.484 5 O -0.538 6.538 6 N -0.714 5.714 7 C 0.102 3.898 8 C 0.111 3.889 9 N -0.617 5.617 10 C -0.308 4.308 11 H 0.084 0.916 12 C -0.021 4.021 13 N -0.928 5.928 14 Si 1.063 2.937 15 H -0.292 1.292 16 H -0.283 1.283 17 H -0.294 1.294 18 C 0.089 3.911 19 C -0.067 4.067 20 C -0.163 4.163 21 C 0.062 3.938 22 O -0.388 6.388 23 C 0.062 3.938 24 C -0.153 4.153 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.398 0.602 29 H 0.121 0.879 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.262 0.738 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 3.605 -24.022 26.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 H 0.115 0.885 4 C 0.302 3.698 5 O -0.415 6.415 6 N -0.365 5.365 7 C -0.004 4.004 8 C -0.016 4.016 9 N -0.346 5.346 10 C -0.434 4.434 11 H 0.101 0.899 12 C -0.220 4.220 13 N -0.570 5.570 14 Si 0.894 3.106 15 H -0.219 1.219 16 H -0.209 1.209 17 H -0.222 1.222 18 C -0.038 4.038 19 C -0.086 4.086 20 C -0.200 4.200 21 C -0.014 4.014 22 O -0.307 6.307 23 C -0.015 4.015 24 C -0.190 4.190 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.232 0.768 29 H 0.139 0.861 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.159 3.659 -24.008 25.319 hybrid contribution -2.042 -0.261 0.564 2.135 sum -9.201 3.398 -23.444 25.413 Atomic orbital electron populations 1.21825 0.92944 1.02851 1.02679 1.21382 0.97417 1.00889 0.93175 0.88542 1.20586 0.79978 0.84587 0.84609 1.90629 1.37780 1.26546 1.86535 1.46044 1.53042 1.31640 1.05748 1.23431 0.97070 0.98094 0.81809 1.22673 0.91449 0.98781 0.88699 1.45897 1.05455 1.76979 1.06222 1.20102 1.01878 1.37092 0.84310 0.89873 1.25794 0.95551 1.01189 0.99495 1.70901 1.36438 1.35581 1.14081 0.83768 0.75606 0.76709 0.74538 1.21949 1.20938 1.22156 1.23151 0.97316 0.96979 0.86307 1.20957 0.95898 0.99623 0.92093 1.22495 0.95256 1.02401 0.99838 1.22596 0.98816 0.94809 0.85194 1.87908 1.20182 1.76041 1.46522 1.22534 0.81396 0.99791 0.97801 1.22322 1.00965 1.00701 0.95044 0.91991 0.91947 0.91301 0.76799 0.86101 0.93096 0.94576 0.92744 0.93631 0.92658 0.90403 0.91773 0.87795 0.93231 0.88983 0.93336 0.89130 0.90657 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.74 37.16 0.32 -0.73 16 2 C -0.11 -1.01 2.32 -91.77 -0.21 -1.22 16 3 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.52 6.91 6.87 -10.99 -0.08 6.83 16 5 O -0.54 -9.13 13.28 5.55 0.07 -9.06 16 6 N -0.71 -9.54 5.28 -53.48 -0.28 -9.82 16 7 C 0.10 1.79 4.62 -67.68 -0.31 1.47 16 8 C 0.11 2.11 8.44 -8.52 -0.07 2.04 16 9 N -0.62 -15.15 3.62 -184.65 -0.67 -15.81 16 10 C -0.31 -8.89 11.03 -15.06 -0.17 -9.05 16 11 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 12 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 13 N -0.93 -29.41 13.70 55.49 0.76 -28.65 16 14 Si 1.06 26.88 25.50 -169.99 -4.34 22.55 16 15 H -0.29 -7.20 6.97 56.52 0.39 -6.81 16 16 H -0.28 -6.60 5.66 56.52 0.32 -6.28 16 17 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 18 C 0.09 1.90 5.43 -8.39 -0.05 1.85 16 19 C -0.07 -0.65 1.49 -90.43 -0.13 -0.78 16 20 C -0.16 -1.81 5.06 -26.58 -0.13 -1.95 16 21 C 0.06 0.65 6.84 37.21 0.25 0.90 16 22 O -0.39 -4.26 10.77 -35.23 -0.38 -4.64 16 23 C 0.06 0.51 6.84 37.20 0.25 0.76 16 24 C -0.15 -1.16 4.98 -26.60 -0.13 -1.30 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.41 7.56 -51.93 -0.39 0.01 16 27 H 0.07 0.39 6.51 -51.93 -0.34 0.05 16 28 H 0.40 4.18 8.17 -40.82 -0.33 3.84 16 29 H 0.12 2.33 7.45 -51.93 -0.39 1.94 16 30 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 33 H 0.05 0.93 7.02 -51.93 -0.36 0.57 16 34 H 0.06 1.26 6.22 -51.93 -0.32 0.94 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.42 5.62 -51.93 -0.29 1.13 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.45 6.63 -51.93 -0.34 0.11 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -33.85 331.56 -7.47 -41.32 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.09 Total: 1.00 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.55 Total: -1.88 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.19 Total: -54.29 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.31 Total: -13.70 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -4.34 Total: 22.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.85 -7.47 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031497943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.602 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds