Wall clock time and date at job start Tue Mar 31 2020 05:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47355 * 2 1 4 4 C 1.50700 * 109.46833 * 120.00060 * 2 1 3 5 5 O 1.21284 * 119.99928 * 119.99959 * 4 2 1 6 6 N 1.34773 * 120.00069 * 299.99729 * 4 2 1 7 7 C 1.46508 * 120.00084 * 180.02562 * 6 4 2 8 8 C 1.53496 * 114.20706 * 204.99914 * 7 6 4 9 9 N 1.47062 * 87.98485 * 220.14769 * 8 7 6 10 10 C 1.36939 * 136.05593 * 207.08750 * 9 8 7 11 11 H 1.08008 * 119.99868 * 7.82597 * 10 9 8 12 12 C 1.38808 * 120.00203 * 187.82575 * 10 9 8 13 13 N 1.31618 * 119.99998 * 195.17052 * 12 10 9 14 14 Si 1.86797 * 119.99840 * 15.16580 * 12 10 9 15 15 H 1.48503 * 109.47450 * 270.00422 * 14 12 10 16 16 H 1.48503 * 109.47360 * 30.00092 * 14 12 10 17 17 H 1.48498 * 109.47360 * 150.00270 * 14 12 10 18 18 C 1.47059 * 87.88616 * 27.34176 * 9 8 7 19 19 C 1.52997 * 109.46839 * 239.99690 * 2 1 3 20 20 C 1.53186 * 109.54156 * 179.82269 * 19 2 1 21 21 C 1.53106 * 109.15418 * 183.24401 * 20 19 2 22 22 O 1.42899 * 109.48704 * 57.47917 * 21 20 19 23 23 C 1.42900 * 114.09509 * 298.88359 * 22 21 20 24 24 C 1.53087 * 109.41632 * 61.16055 * 23 22 21 25 25 H 1.09004 * 109.47038 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47330 * 300.00102 * 1 2 3 27 27 H 1.08996 * 109.46982 * 60.00178 * 1 2 3 28 28 H 0.96994 * 120.00469 * 0.02562 * 6 4 2 29 29 H 1.09001 * 113.27729 * 338.06767 * 7 6 4 30 30 H 1.09008 * 113.46447 * 105.36204 * 8 7 6 31 31 H 1.09003 * 113.46673 * 334.93103 * 8 7 6 32 32 H 0.96995 * 120.00365 * 354.90363 * 13 12 10 33 33 H 1.08997 * 113.47135 * 87.43718 * 18 9 8 34 34 H 1.09007 * 113.47198 * 217.88025 * 18 9 8 35 35 H 1.09004 * 109.55025 * 300.00230 * 19 2 1 36 36 H 1.08997 * 109.52509 * 303.06179 * 20 19 2 37 37 H 1.09003 * 109.52132 * 63.25203 * 20 19 2 38 38 H 1.08999 * 109.40512 * 297.48906 * 21 20 19 39 39 H 1.09006 * 109.47755 * 177.50632 * 21 20 19 40 40 H 1.09005 * 109.48269 * 301.17772 * 23 22 21 41 41 H 1.09004 * 109.48157 * 181.14417 * 23 22 21 42 42 H 1.09003 * 109.52346 * 182.48045 * 24 23 22 43 43 H 1.08999 * 109.57651 * 62.32889 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4545 7 6 2.1955 -0.9403 3.6508 8 6 1.3241 -0.7329 4.8973 9 7 2.5633 -0.6255 5.6820 10 6 2.9331 -0.8643 6.9787 11 1 2.2431 -1.3437 7.6574 12 6 4.1946 -0.4903 7.4208 13 7 4.6655 -0.9725 8.5513 14 14 5.2241 0.6972 6.4111 15 1 6.0596 -0.0660 5.4495 16 1 4.3289 1.6187 5.6663 17 1 6.1022 1.4830 7.3148 18 6 3.2290 -0.1426 4.4628 19 6 2.0399 -0.7213 -1.2492 20 6 3.5718 -0.7184 -1.2531 21 6 4.0721 -1.3700 -2.5452 22 8 3.5401 -0.6676 -3.6702 23 6 2.1131 -0.6792 -3.7437 24 6 1.5340 0.0020 -2.5010 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.1488 0.5385 2.5436 29 1 2.4719 -1.9784 3.4663 30 1 0.7210 -1.6035 5.1552 31 1 0.7443 0.1899 4.8730 32 1 4.1038 -1.5300 9.1121 33 1 3.1515 0.9357 4.3239 34 1 4.2490 -0.5103 4.3504 35 1 1.6772 -1.7492 -1.2504 36 1 3.9343 0.3081 -1.2003 37 1 3.9393 -1.2801 -0.3943 38 1 3.7445 -2.4091 -2.5771 39 1 5.1610 -1.3310 -2.5739 40 1 1.7598 -1.7093 -3.7914 41 1 1.7906 -0.1425 -4.6360 42 1 0.4455 -0.0447 -2.5338 43 1 1.8530 1.0439 -2.4736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031497943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:44 Heat of formation + Delta-G solvation = -61.068290 kcal Electronic energy + Delta-G solvation = -22837.426627 eV Core-core repulsion = 19497.111297 eV Total energy + Delta-G solvation = -3340.315329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54821 -40.37536 -39.36284 -36.20426 -35.33534 -34.19896 -32.10669 -31.73436 -29.58391 -26.98989 -26.55285 -25.28921 -24.31757 -23.36139 -21.61921 -21.32846 -20.69330 -19.55259 -18.09900 -17.68145 -17.07630 -16.99361 -16.85940 -16.28198 -15.93706 -15.69043 -15.35831 -15.30201 -14.87829 -14.46657 -14.25870 -13.75576 -13.66781 -13.43535 -13.24676 -13.23195 -12.96254 -12.62808 -12.56867 -12.38593 -12.19746 -12.00274 -11.77325 -11.63798 -11.52966 -11.36612 -11.13173 -10.92580 -10.60978 -10.31672 -9.93491 -9.30746 -8.67042 -5.52092 1.37493 1.46833 1.61683 1.66603 2.12091 2.50464 3.00843 3.03548 3.12607 3.55142 3.60241 3.71391 3.82296 4.06762 4.13688 4.18096 4.27442 4.34360 4.38758 4.45101 4.47142 4.57309 4.59521 4.66471 4.72656 4.76879 4.82568 4.91990 4.99284 5.00652 5.03948 5.07901 5.15537 5.16181 5.31963 5.42311 5.47405 5.61267 5.91216 6.30555 6.61292 6.65251 7.28373 7.32157 8.21103 8.85129 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029082 B = 0.003694 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.555039 B = 7577.665994 C = 8133.974043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.117 0.883 4 C 0.513 3.487 5 O -0.577 6.577 6 N -0.702 5.702 7 C 0.129 3.871 8 C 0.117 3.883 9 N -0.653 5.653 10 C -0.293 4.293 11 H 0.054 0.946 12 C -0.082 4.082 13 N -0.967 5.967 14 Si 1.101 2.899 15 H -0.287 1.287 16 H -0.249 1.249 17 H -0.299 1.299 18 C 0.083 3.917 19 C -0.067 4.067 20 C -0.161 4.161 21 C 0.063 3.937 22 O -0.404 6.404 23 C 0.052 3.948 24 C -0.144 4.144 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.417 0.583 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.248 0.752 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.255 5.811 -27.068 29.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.135 0.865 4 C 0.301 3.699 5 O -0.456 6.456 6 N -0.354 5.354 7 C 0.022 3.978 8 C -0.009 4.009 9 N -0.381 5.381 10 C -0.421 4.421 11 H 0.072 0.928 12 C -0.274 4.274 13 N -0.612 5.612 14 Si 0.926 3.074 15 H -0.215 1.215 16 H -0.173 1.173 17 H -0.227 1.227 18 C -0.043 4.043 19 C -0.086 4.086 20 C -0.198 4.198 21 C -0.013 4.013 22 O -0.324 6.324 23 C -0.024 4.024 24 C -0.181 4.181 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.255 0.745 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.165 5.890 -27.114 29.221 hybrid contribution -1.543 -1.042 1.433 2.350 sum -10.709 4.848 -25.681 28.243 Atomic orbital electron populations 1.21859 0.90695 1.02904 1.04561 1.21401 0.99059 1.00959 0.90368 0.86545 1.21403 0.78960 0.84102 0.85441 1.90638 1.39419 1.28487 1.87070 1.45805 1.53132 1.32028 1.04421 1.22671 0.95232 0.96857 0.83054 1.22855 0.90145 1.00305 0.87588 1.45890 1.08965 1.77764 1.05529 1.19960 1.01125 1.35021 0.85947 0.92770 1.27051 0.97501 1.02745 1.00112 1.71004 1.36870 1.37614 1.15685 0.83321 0.74917 0.75499 0.73632 1.21452 1.17299 1.22692 1.23369 0.97138 0.98356 0.85436 1.20957 0.94680 0.99375 0.93560 1.22411 0.96672 1.01827 0.98917 1.22557 0.99089 0.94643 0.85040 1.87886 1.21969 1.76076 1.46439 1.22788 0.80031 1.00512 0.99079 1.22279 1.02284 1.00355 0.93175 0.92869 0.90683 0.88890 0.74550 0.88107 0.92923 0.91047 0.94232 0.91485 0.94554 0.91861 0.91724 0.90677 0.93454 0.88780 0.93093 0.87174 0.88241 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.74 71.98 0.63 -0.80 16 2 C -0.10 -1.49 2.32 -11.54 -0.03 -1.51 16 3 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 4 C 0.51 12.55 6.87 87.66 0.60 13.15 16 5 O -0.58 -19.27 13.28 -3.04 -0.04 -19.31 16 6 N -0.70 -16.48 5.28 -441.52 -2.33 -18.81 16 7 C 0.13 4.28 4.62 45.55 0.21 4.49 16 8 C 0.12 4.14 8.44 83.17 0.70 4.85 16 9 N -0.65 -31.35 3.62 -738.11 -2.67 -34.02 16 10 C -0.29 -17.17 11.03 84.03 0.93 -16.24 16 11 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 12 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 13 N -0.97 -63.34 13.70 21.65 0.30 -63.05 16 14 Si 1.10 54.20 25.50 68.60 1.75 55.94 16 15 H -0.29 -13.78 6.97 99.48 0.69 -13.09 16 16 H -0.25 -10.67 5.66 99.48 0.56 -10.11 16 17 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 18 C 0.08 3.36 5.43 83.26 0.45 3.81 16 19 C -0.07 -1.14 1.49 -10.67 -0.02 -1.16 16 20 C -0.16 -3.44 5.06 30.69 0.16 -3.28 16 21 C 0.06 1.28 6.84 72.02 0.49 1.77 16 22 O -0.40 -8.23 10.77 -148.98 -1.60 -9.84 16 23 C 0.05 0.72 6.84 72.01 0.49 1.21 16 24 C -0.14 -1.67 4.98 30.68 0.15 -1.52 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.59 7.56 -2.39 -0.02 0.57 16 27 H 0.09 0.53 6.51 -2.39 -0.02 0.52 16 28 H 0.42 6.79 8.17 -92.71 -0.76 6.03 16 29 H 0.10 3.84 7.45 -2.39 -0.02 3.82 16 30 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 32 H 0.25 16.27 8.73 -92.71 -0.81 15.46 16 33 H 0.07 2.46 7.02 -2.39 -0.02 2.44 16 34 H 0.04 1.61 6.22 -2.38 -0.01 1.60 16 35 H 0.06 1.28 8.10 -2.38 -0.02 1.26 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 2.07 5.62 -2.39 -0.01 2.06 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 40 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 0.71 6.63 -2.39 -0.02 0.69 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -76.43 331.56 0.68 -75.75 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.05 Total: 13.03 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.24 Total: 0.29 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -4.71 Total: -115.88 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -1.64 Total: -29.14 kcal Atomic # 14 Polarization: 54.20 SS G_CDS: 1.75 Total: 55.94 kcal Total: -76.43 0.68 -75.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031497943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.684 kcal (2) G-P(sol) polarization free energy of solvation -76.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds