Wall clock time and date at job start Tue Mar 31 2020 05:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.52415 * 2 1 4 4 C 1.53092 * 109.52056 * 120.18930 * 2 1 3 5 5 O 1.42902 * 109.41359 * 177.51332 * 4 2 1 6 6 C 1.42898 * 114.09603 * 298.83641 * 5 4 2 7 7 C 1.53093 * 109.41712 * 61.15991 * 6 5 4 8 8 C 1.53174 * 109.52022 * 239.86927 * 2 1 3 9 9 H 1.08999 * 109.54553 * 63.16334 * 8 2 1 10 10 C 1.50702 * 109.54790 * 302.98448 * 8 2 1 11 11 O 1.21282 * 119.99684 * 359.97438 * 10 8 2 12 12 N 1.34769 * 120.00461 * 179.97438 * 10 8 2 13 13 C 1.46500 * 120.00237 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.46998 * 180.02562 * 13 12 10 15 15 C 1.53938 * 113.74094 * 273.73971 * 14 13 12 16 16 N 1.47807 * 86.03838 * 222.08818 * 15 14 13 17 17 C 1.36938 * 134.45845 * 204.64934 * 16 15 14 18 18 H 1.08003 * 120.00436 * 179.86413 * 17 16 15 19 19 C 1.38811 * 119.99991 * 359.86109 * 17 16 15 20 20 N 1.31620 * 120.00043 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00130 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47131 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47236 * 119.99678 * 21 19 17 24 24 H 1.48500 * 109.47116 * 239.99948 * 21 19 17 25 25 C 1.47575 * 91.05131 * 24.54795 * 16 15 14 26 26 H 1.08995 * 109.47433 * 180.12743 * 1 2 3 27 27 H 1.09000 * 109.47177 * 300.13535 * 1 2 3 28 28 H 1.09007 * 109.47061 * 60.12254 * 1 2 3 29 29 H 1.09007 * 109.48060 * 297.49189 * 4 2 1 30 30 H 1.09000 * 109.48110 * 57.52545 * 4 2 1 31 31 H 1.09001 * 109.48446 * 181.14537 * 6 5 4 32 32 H 1.09006 * 109.48454 * 301.17888 * 6 5 4 33 33 H 1.08994 * 109.52454 * 182.48335 * 7 6 5 34 34 H 1.09006 * 109.51580 * 62.29703 * 7 6 5 35 35 H 0.97010 * 119.99854 * 0.02562 * 12 10 8 36 36 H 1.08993 * 109.47452 * 60.00368 * 13 12 10 37 37 H 1.09000 * 109.47175 * 300.00158 * 13 12 10 38 38 H 1.08998 * 112.94626 * 45.33304 * 14 13 12 39 39 H 1.09007 * 113.77143 * 336.35015 * 15 14 13 40 40 H 1.09002 * 113.76831 * 107.74623 * 15 14 13 41 41 H 0.96995 * 120.00421 * 179.97438 * 20 19 17 42 42 H 1.08998 * 113.77358 * 221.15221 * 25 16 15 43 43 H 1.09005 * 113.77215 * 89.75652 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0415 -0.7256 1.2472 5 8 3.4694 -0.7750 1.2159 6 6 4.0042 -1.4818 0.0950 7 6 3.5715 -0.7867 -1.1986 8 6 2.0418 -0.7247 -1.2486 9 1 1.7266 -0.1823 -2.1400 10 6 1.4816 -2.1232 -1.2851 11 8 0.7455 -2.5049 -0.4000 12 7 1.7985 -2.9499 -2.3012 13 6 1.2534 -4.3092 -2.3370 14 6 1.7658 -5.0315 -3.5847 15 6 0.9092 -4.7843 -4.8396 16 7 1.0772 -6.2271 -5.1133 17 6 1.0351 -7.0003 -6.2427 18 1 1.1979 -8.0658 -6.1741 19 6 0.7830 -6.4147 -7.4757 20 7 0.5850 -5.1162 -7.5594 21 14 0.7247 -7.4696 -9.0163 22 1 0.9770 -8.8877 -8.6550 23 1 -0.6143 -7.3508 -9.6472 24 1 1.7645 -7.0089 -9.9712 25 6 1.3112 -6.4991 -3.6818 26 1 -0.3634 -1.0276 0.0023 27 1 -0.3633 0.5159 0.8888 28 1 -0.3633 0.5120 -0.8911 29 1 1.7159 -0.1896 2.1388 30 1 1.6430 -1.7399 1.2668 31 1 5.0924 -1.4907 0.1564 32 1 3.6313 -2.5061 0.0994 33 1 3.9415 -1.3492 -2.0557 34 1 3.9780 0.2244 -1.2223 35 1 2.3876 -2.6448 -3.0090 36 1 0.1648 -4.2636 -2.3645 37 1 1.5719 -4.8519 -1.4469 38 1 2.8343 -4.8914 -3.7481 39 1 -0.1188 -4.4957 -4.6200 40 1 1.3857 -4.1377 -5.5764 41 1 0.4092 -4.7069 -8.4211 42 1 2.1081 -7.2191 -3.4959 43 1 0.4016 -6.7153 -3.1213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031957764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:45 Heat of formation + Delta-G solvation = -36.481235 kcal Electronic energy + Delta-G solvation = -22920.591012 eV Core-core repulsion = 19581.341858 eV Total energy + Delta-G solvation = -3339.249155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.89242 -38.56472 -37.75435 -34.74004 -34.29089 -32.50632 -31.95779 -28.95579 -27.16839 -26.15117 -25.15972 -24.80643 -22.65394 -22.24889 -21.26177 -19.93994 -18.75444 -16.85005 -16.73072 -16.41720 -16.20716 -15.90657 -15.40566 -14.94060 -14.66618 -14.43022 -14.04067 -13.91815 -13.43485 -13.10020 -12.87079 -12.61542 -12.40545 -12.35542 -12.09683 -11.68505 -11.44401 -11.36565 -11.16752 -11.02631 -10.77409 -10.74717 -10.61467 -10.56689 -9.97948 -9.77792 -9.69428 -9.49031 -9.19730 -8.84681 -8.82251 -6.91543 -5.80691 -3.12800 2.65343 3.27227 3.36295 3.41888 3.44221 3.77555 4.37623 4.42104 4.51908 4.58168 4.74780 4.97537 5.08015 5.14663 5.25428 5.29598 5.34300 5.35605 5.49926 5.52443 5.55616 5.61756 5.68206 5.75658 5.79126 5.87976 5.95859 5.97745 6.06317 6.19356 6.29432 6.40189 6.54790 6.62818 6.73530 7.08820 7.17477 7.30899 7.51092 7.60804 7.94389 8.30531 9.01206 9.67370 10.56050 11.36627 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034627 B = 0.003255 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.422074 B = 8600.051473 C = 8678.070620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 H 0.079 0.921 4 C 0.053 3.947 5 O -0.386 6.386 6 C 0.059 3.941 7 C -0.147 4.147 8 C -0.111 4.111 9 H 0.102 0.898 10 C 0.515 3.485 11 O -0.538 6.538 12 N -0.720 5.720 13 C 0.130 3.870 14 C -0.153 4.153 15 C 0.169 3.831 16 N -0.613 5.613 17 C -0.223 4.223 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.128 3.872 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 10.973 14.413 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.120 4.120 3 H 0.097 0.903 4 C -0.023 4.023 5 O -0.304 6.304 6 C -0.018 4.018 7 C -0.185 4.185 8 C -0.132 4.132 9 H 0.120 0.880 10 C 0.301 3.699 11 O -0.417 6.417 12 N -0.370 5.370 13 C 0.006 3.994 14 C -0.173 4.173 15 C 0.044 3.956 16 N -0.339 5.339 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.002 3.998 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.236 0.764 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.842 10.675 14.822 18.897 hybrid contribution -0.116 -0.427 -1.648 1.706 sum 4.726 10.248 13.174 17.347 Atomic orbital electron populations 1.22104 0.93858 1.05083 1.01081 1.21502 0.97193 0.99148 0.94138 0.90308 1.22926 0.80231 1.02040 0.97120 1.87887 1.21035 1.76295 1.45230 1.22562 0.99088 0.94821 0.85371 1.22207 0.93766 1.03115 0.99434 1.21486 0.96433 0.94164 1.01124 0.88041 1.20513 0.80745 0.86979 0.81648 1.90547 1.36975 1.76660 1.37496 1.46129 1.50529 1.14592 1.25737 1.21453 0.98733 0.80780 0.98460 1.23801 1.00926 0.97525 0.95050 1.22346 0.94914 0.87756 0.90630 1.45988 1.83213 1.04399 1.00301 1.19089 1.41684 0.90626 0.83630 0.90187 1.24778 1.02114 0.96076 0.97510 1.69818 1.54673 1.08748 1.23713 0.86048 0.77298 0.79270 0.83162 1.20445 1.21735 1.21682 1.22486 0.97071 0.93176 0.87110 0.88869 0.92975 0.93102 0.89365 0.90341 0.88710 0.93126 0.90137 0.89882 0.76439 0.91409 0.92022 0.89269 0.95547 0.91005 0.93713 0.93670 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.86 37.16 0.33 -1.42 16 2 C -0.10 -1.03 2.67 -90.48 -0.24 -1.27 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.05 0.60 5.86 37.20 0.22 0.82 16 5 O -0.39 -4.62 10.77 -35.23 -0.38 -5.00 16 6 C 0.06 0.59 6.62 37.21 0.25 0.83 16 7 C -0.15 -1.27 5.57 -26.59 -0.15 -1.41 16 8 C -0.11 -1.12 2.61 -91.59 -0.24 -1.36 16 9 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 10 C 0.51 6.60 5.52 -10.99 -0.06 6.54 16 11 O -0.54 -8.34 11.36 5.56 0.06 -8.27 16 12 N -0.72 -9.08 5.44 -60.29 -0.33 -9.41 16 13 C 0.13 1.91 5.51 -4.04 -0.02 1.89 16 14 C -0.15 -2.63 3.93 -89.70 -0.35 -2.99 16 15 C 0.17 3.79 7.08 -2.85 -0.02 3.77 16 16 N -0.61 -15.48 3.70 -177.73 -0.66 -16.13 16 17 C -0.22 -6.22 10.70 -15.06 -0.16 -6.38 16 18 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -26.99 11.39 55.49 0.63 -26.36 16 21 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.13 2.53 8.51 -2.97 -0.03 2.51 16 26 H 0.09 1.23 5.27 -51.93 -0.27 0.95 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.08 1.04 5.80 -51.93 -0.30 0.74 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.57 7.38 -51.93 -0.38 0.19 16 33 H 0.08 0.60 7.52 -51.93 -0.39 0.21 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 4.39 7.89 -40.82 -0.32 4.07 16 36 H 0.07 1.11 7.88 -51.93 -0.41 0.70 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.03 0.62 7.92 -51.92 -0.41 0.21 16 40 H 0.07 1.77 7.16 -51.93 -0.37 1.40 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -31.86 334.96 -8.28 -40.14 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.06 Total: 1.85 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.57 Total: 1.20 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.35 Total: -51.90 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.32 Total: -13.27 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.86 -8.28 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031957764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.659 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds