Wall clock time and date at job start Tue Mar 31 2020 05:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.57435 * 2 1 4 4 C 1.53098 * 109.52104 * 120.16078 * 2 1 3 5 5 O 1.42907 * 109.40927 * 177.51374 * 4 2 1 6 6 C 1.42900 * 114.09828 * 298.83262 * 5 4 2 7 7 C 1.53094 * 109.41302 * 61.16809 * 6 5 4 8 8 C 1.53182 * 109.15972 * 302.38752 * 7 6 5 9 9 H 1.08995 * 109.54553 * 297.02512 * 8 7 6 10 10 C 1.50698 * 109.54221 * 176.84750 * 8 7 6 11 11 O 1.21286 * 120.00261 * 239.99516 * 10 8 7 12 12 N 1.34779 * 120.00253 * 60.00118 * 10 8 7 13 13 C 1.46498 * 120.00066 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.46726 * 179.97438 * 13 12 10 15 15 C 1.53937 * 113.74276 * 271.67407 * 14 13 12 16 16 N 1.47577 * 86.12071 * 222.04937 * 15 14 13 17 17 C 1.36931 * 134.49446 * 204.64007 * 16 15 14 18 18 H 1.08004 * 119.99907 * 180.02562 * 17 16 15 19 19 C 1.38806 * 120.00170 * 0.02562 * 17 16 15 20 20 N 1.31615 * 120.00325 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00277 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47185 * 59.99553 * 21 19 17 23 23 H 1.48501 * 109.47479 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46958 * 300.00078 * 21 19 17 25 25 C 1.47585 * 91.01284 * 24.64079 * 16 15 14 26 26 H 1.09004 * 109.47083 * 180.15854 * 1 2 3 27 27 H 1.08997 * 109.46975 * 300.15682 * 1 2 3 28 28 H 1.08999 * 109.46989 * 60.15771 * 1 2 3 29 29 H 1.08998 * 109.48432 * 57.52825 * 4 2 1 30 30 H 1.08998 * 109.47724 * 297.48978 * 4 2 1 31 31 H 1.08994 * 109.48336 * 301.18598 * 6 5 4 32 32 H 1.08998 * 109.49141 * 181.14782 * 6 5 4 33 33 H 1.08993 * 109.52677 * 182.48405 * 7 6 5 34 34 H 1.08992 * 109.57702 * 62.32147 * 7 6 5 35 35 H 0.96998 * 119.99624 * 359.97438 * 12 10 8 36 36 H 1.08995 * 109.47463 * 60.00346 * 13 12 10 37 37 H 1.09000 * 109.47136 * 299.99912 * 13 12 10 38 38 H 1.08995 * 112.94199 * 43.41061 * 14 13 12 39 39 H 1.09003 * 113.77295 * 336.35252 * 15 14 13 40 40 H 1.09004 * 113.77134 * 107.74894 * 15 14 13 41 41 H 0.96998 * 120.00656 * 179.97438 * 20 19 17 42 42 H 1.09000 * 113.77328 * 221.06020 * 25 16 15 43 43 H 1.09001 * 113.76777 * 89.66417 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7250 1.2476 5 8 3.4695 -0.7744 1.2162 6 6 4.0043 -1.4818 0.0957 7 6 3.5716 -0.7872 -1.1982 8 6 2.0419 -0.7254 -1.2483 9 1 1.6367 -1.7369 -1.2758 10 6 1.6078 0.0251 -2.4809 11 8 0.9464 1.0361 -2.3739 12 7 1.9545 -0.4271 -3.7023 13 6 1.5320 0.3022 -4.9006 14 6 2.0542 -0.4172 -6.1460 15 6 3.4630 0.0304 -6.5753 16 7 2.9429 -0.0001 -7.9560 17 6 3.5112 -0.1520 -9.1925 18 1 2.8917 -0.1366 -10.0772 19 6 4.8834 -0.3258 -9.3091 20 7 5.6384 -0.3441 -8.2312 21 14 5.6586 -0.5338 -10.9959 22 1 5.3778 0.6683 -11.8214 23 1 7.1269 -0.7007 -10.8488 24 1 5.0874 -1.7337 -11.6587 25 6 1.5640 0.1990 -7.4688 26 1 -0.3633 -1.0277 0.0028 27 1 -0.3633 0.5163 0.8886 28 1 -0.3633 0.5114 -0.8914 29 1 1.6431 -1.7393 1.2677 30 1 1.7160 -0.1886 2.1388 31 1 3.6314 -2.5059 0.1007 32 1 5.0925 -1.4907 0.1569 33 1 3.9416 -1.3501 -2.0551 34 1 3.9780 0.2238 -1.2236 35 1 2.4837 -1.2355 -3.7879 36 1 1.9348 1.3146 -4.8707 37 1 0.4434 0.3451 -4.9349 38 1 1.9323 -1.4991 -6.0941 39 1 3.7316 1.0284 -6.2289 40 1 4.2379 -0.7113 -6.3813 41 1 6.5972 -0.4659 -8.3126 42 1 0.8225 -0.4081 -7.9882 43 1 1.2747 1.2466 -7.3850 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031957765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:47 Heat of formation + Delta-G solvation = -43.115728 kcal Electronic energy + Delta-G solvation = -22563.586698 eV Core-core repulsion = 19224.049850 eV Total energy + Delta-G solvation = -3339.536848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55588 -38.81239 -37.92227 -34.67979 -34.29507 -32.51943 -32.02142 -29.00017 -27.25115 -26.29012 -25.19475 -24.78662 -22.52588 -22.07895 -20.98615 -20.03782 -18.96520 -17.32319 -16.72758 -16.39042 -16.06425 -15.71773 -15.25399 -14.98591 -14.69294 -14.56877 -14.27665 -13.86140 -13.45535 -13.35226 -12.80918 -12.64656 -12.34659 -12.29297 -11.99754 -11.64632 -11.42356 -11.34820 -11.17030 -11.01120 -10.83082 -10.74468 -10.63088 -10.57492 -10.09704 -9.92257 -9.78727 -9.48756 -9.30309 -8.83232 -8.80212 -6.90431 -5.79230 -3.11505 2.70351 3.28732 3.37992 3.42190 3.43262 3.66381 4.35357 4.43374 4.51786 4.56389 4.68591 4.96008 5.02133 5.14822 5.18703 5.26649 5.29247 5.34522 5.35776 5.42201 5.43635 5.54141 5.63855 5.67865 5.81205 5.86846 5.89047 6.02768 6.15303 6.20821 6.26271 6.35185 6.54298 6.62597 6.74515 6.95267 7.18783 7.32491 7.52145 7.64387 7.95938 8.33713 9.02537 9.68554 10.57643 11.37852 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.003284 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.817495 B = 8524.563108 C = 9330.473243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 H 0.087 0.913 4 C 0.065 3.935 5 O -0.383 6.383 6 C 0.063 3.937 7 C -0.150 4.150 8 C -0.106 4.106 9 H 0.096 0.904 10 C 0.516 3.484 11 O -0.541 6.541 12 N -0.721 5.721 13 C 0.130 3.870 14 C -0.153 4.153 15 C 0.169 3.831 16 N -0.612 5.612 17 C -0.224 4.224 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.128 3.872 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.401 0.599 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 -4.065 18.021 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.124 4.124 3 H 0.105 0.895 4 C -0.012 4.012 5 O -0.302 6.302 6 C -0.014 4.014 7 C -0.188 4.188 8 C -0.128 4.128 9 H 0.114 0.886 10 C 0.302 3.698 11 O -0.419 6.419 12 N -0.371 5.371 13 C 0.006 3.994 14 C -0.173 4.173 15 C 0.044 3.956 16 N -0.338 5.338 17 C -0.352 4.352 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.743 3.257 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.211 1.211 25 C 0.001 3.999 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.235 0.765 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.363 -3.296 17.970 19.698 hybrid contribution 0.607 -0.502 -1.334 1.549 sum -6.756 -3.798 16.636 18.353 Atomic orbital electron populations 1.21913 0.93926 1.01559 1.03679 1.21566 0.97025 1.00791 0.93015 0.89504 1.22712 0.80881 0.99587 0.97975 1.87943 1.20404 1.76423 1.45411 1.22582 0.99432 0.94381 0.84994 1.22230 0.93690 1.03406 0.99463 1.21448 0.97078 1.00553 0.93675 0.88615 1.20455 0.79611 0.85195 0.84536 1.90643 1.39201 1.25323 1.86706 1.46101 1.55463 1.29725 1.05857 1.21451 0.99055 0.95953 0.82963 1.23803 1.01130 0.99887 0.92473 1.22313 0.91964 0.98027 0.83335 1.45925 1.01608 1.83985 1.02318 1.18990 0.90701 1.42557 0.82946 0.90305 1.24776 0.95866 1.02389 0.97392 1.69795 1.04557 1.56001 1.26587 0.86198 0.78275 0.78017 0.83250 1.21188 1.21530 1.21074 1.22497 0.89770 0.96999 0.90631 0.93331 0.92720 0.89838 0.93156 0.88673 0.92947 0.88382 0.89840 0.90178 0.76507 0.91443 0.92026 0.89272 0.95576 0.90993 0.93607 0.93686 0.94672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.92 37.16 0.33 -1.19 16 2 C -0.10 -1.07 2.05 -90.47 -0.19 -1.26 16 3 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 4 C 0.07 0.57 6.13 37.21 0.23 0.80 16 5 O -0.38 -4.03 10.77 -35.23 -0.38 -4.41 16 6 C 0.06 0.53 6.84 37.21 0.25 0.79 16 7 C -0.15 -1.40 5.29 -26.59 -0.14 -1.54 16 8 C -0.11 -1.07 2.11 -91.58 -0.19 -1.27 16 9 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 10 C 0.52 6.90 6.88 -10.99 -0.08 6.83 16 11 O -0.54 -9.04 13.86 5.55 0.08 -8.96 16 12 N -0.72 -9.38 5.46 -60.29 -0.33 -9.71 16 13 C 0.13 1.97 5.53 -4.04 -0.02 1.95 16 14 C -0.15 -2.68 3.94 -89.69 -0.35 -3.03 16 15 C 0.17 3.83 7.07 -2.98 -0.02 3.81 16 16 N -0.61 -15.58 3.70 -177.92 -0.66 -16.24 16 17 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 18 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -27.05 11.38 55.49 0.63 -26.42 16 21 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.13 2.55 8.50 -2.97 -0.03 2.53 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.05 5.79 -51.93 -0.30 0.75 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.69 7.67 -51.93 -0.40 0.30 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.40 4.45 7.96 -40.82 -0.32 4.12 16 36 H 0.07 1.14 7.83 -51.93 -0.41 0.73 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.03 0.62 7.89 -51.93 -0.41 0.21 16 40 H 0.07 1.78 7.15 -51.93 -0.37 1.41 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.69 8.10 -51.93 -0.42 0.26 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -32.61 341.66 -8.24 -40.85 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.25 Total: 1.08 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.46 Total: 1.65 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.36 Total: -52.36 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.30 Total: -13.37 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.61 -8.24 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031957765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.269 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds