Wall clock time and date at job start Tue Mar 31 2020 05:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.57618 * 2 1 4 4 C 1.53105 * 109.59802 * 239.88161 * 2 1 3 5 5 O 1.42901 * 109.48786 * 182.57854 * 4 2 1 6 6 C 1.42906 * 114.09835 * 61.11214 * 5 4 2 7 7 C 1.53095 * 109.41292 * 298.84452 * 6 5 4 8 8 C 1.53167 * 109.16749 * 57.60651 * 7 6 5 9 9 H 1.09007 * 109.54464 * 62.97068 * 8 7 6 10 10 C 1.50700 * 109.54496 * 183.15239 * 8 7 6 11 11 O 1.21276 * 119.99968 * 119.82603 * 10 8 7 12 12 N 1.34778 * 119.99785 * 299.81992 * 10 8 7 13 13 C 1.46503 * 119.99560 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46619 * 180.02562 * 13 12 10 15 15 C 1.53501 * 114.20124 * 185.00109 * 14 13 12 16 16 N 1.47074 * 87.98318 * 220.14501 * 15 14 13 17 17 C 1.36935 * 136.05671 * 207.08663 * 16 15 14 18 18 H 1.07995 * 119.99987 * 6.49427 * 17 16 15 19 19 C 1.38811 * 119.99581 * 186.50006 * 17 16 15 20 20 N 1.31614 * 120.00556 * 6.41294 * 19 17 16 21 21 Si 1.86800 * 119.99706 * 186.41763 * 19 17 16 22 22 H 1.48501 * 109.47400 * 84.98677 * 21 19 17 23 23 H 1.48504 * 109.47045 * 204.98899 * 21 19 17 24 24 H 1.48504 * 109.47349 * 324.98598 * 21 19 17 25 25 C 1.47073 * 87.88168 * 27.34207 * 16 15 14 26 26 H 1.09003 * 109.47252 * 299.83982 * 1 2 3 27 27 H 1.09000 * 109.47251 * 59.83956 * 1 2 3 28 28 H 1.08997 * 109.47523 * 179.84673 * 1 2 3 29 29 H 1.09002 * 109.48291 * 62.54847 * 4 2 1 30 30 H 1.09000 * 109.41551 * 302.56709 * 4 2 1 31 31 H 1.08999 * 109.47903 * 178.85776 * 6 5 4 32 32 H 1.09006 * 109.47749 * 58.82294 * 6 5 4 33 33 H 1.08998 * 109.51995 * 297.69514 * 7 6 5 34 34 H 1.09006 * 109.51868 * 177.51539 * 7 6 5 35 35 H 0.97000 * 119.99989 * 0.02562 * 12 10 8 36 36 H 1.08994 * 109.47276 * 60.00215 * 13 12 10 37 37 H 1.09004 * 109.47272 * 300.00039 * 13 12 10 38 38 H 1.09000 * 113.28078 * 318.06351 * 14 13 12 39 39 H 1.09001 * 113.46856 * 105.37188 * 15 14 13 40 40 H 1.08994 * 113.46903 * 334.92146 * 15 14 13 41 41 H 0.97005 * 120.00690 * 179.97438 * 20 19 17 42 42 H 1.09001 * 113.46425 * 87.43869 * 25 16 15 43 43 H 1.09003 * 113.46427 * 217.87257 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0435 -0.7238 -1.2476 5 8 3.4712 -0.7750 -1.2152 6 6 4.0043 -1.4836 -0.0946 7 6 3.5714 -0.7892 1.1993 8 6 2.0419 -0.7253 1.2483 9 1 1.6353 -1.7364 1.2749 10 6 1.6078 0.0252 2.4810 11 8 0.9506 1.0387 2.3738 12 7 1.9500 -0.4302 3.7025 13 6 1.5275 0.2991 4.9008 14 6 2.0440 -0.4240 6.1464 15 6 1.5609 0.1819 7.4714 16 7 2.9096 -0.0511 8.0097 17 6 3.4529 -0.2705 9.2474 18 1 2.8088 -0.4036 10.1040 19 6 4.8315 -0.3218 9.4009 20 7 5.6180 -0.0352 8.3852 21 14 5.5706 -0.7977 11.0492 22 1 5.6470 -2.2774 11.1487 23 1 6.9349 -0.2227 11.1644 24 1 4.7175 -0.2713 12.1448 25 6 3.4186 0.0616 6.6345 26 1 -0.3634 0.5114 0.8914 27 1 -0.3634 0.5163 -0.8885 28 1 -0.3634 -1.0276 -0.0027 29 1 1.7191 -0.1866 -2.1389 30 1 1.6437 -1.7376 -1.2687 31 1 5.0926 -1.4937 -0.1552 32 1 3.6302 -2.5074 -0.1004 33 1 3.9792 0.2214 1.2244 34 1 3.9402 -1.3530 2.0563 35 1 2.4759 -1.2407 3.7882 36 1 0.4390 0.3461 4.9327 37 1 1.9342 1.3100 4.8732 38 1 1.9441 -1.5078 6.0877 39 1 0.7890 -0.4099 7.9635 40 1 1.2999 1.2374 7.3965 41 1 6.5814 -0.0707 8.4926 42 1 3.6473 1.0856 6.3390 43 1 4.2295 -0.6325 6.4136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031957767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:52 Heat of formation + Delta-G solvation = -40.334865 kcal Electronic energy + Delta-G solvation = -22530.498382 eV Core-core repulsion = 19191.082122 eV Total energy + Delta-G solvation = -3339.416261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.56692 -38.86061 -38.05968 -34.71023 -34.31033 -32.53659 -32.06316 -29.05289 -27.27493 -26.32239 -25.23100 -24.61435 -22.53829 -22.15093 -20.99703 -20.06862 -19.05167 -17.33482 -16.73543 -16.39354 -16.07326 -15.71278 -15.27158 -14.95716 -14.69947 -14.59776 -14.28773 -13.89489 -13.47355 -13.37677 -12.83174 -12.65595 -12.35553 -12.30489 -12.01024 -11.66592 -11.48307 -11.28738 -11.17595 -11.10659 -10.84868 -10.80859 -10.64022 -10.58061 -10.10716 -9.97234 -9.83630 -9.38563 -9.25169 -8.84494 -8.79323 -6.92901 -5.82761 -3.13902 2.69334 3.27339 3.36539 3.41151 3.43126 3.65496 4.34364 4.42025 4.50764 4.55197 4.67469 4.95105 5.01379 5.16103 5.17768 5.22094 5.28746 5.33195 5.34895 5.41333 5.42699 5.53166 5.65201 5.66965 5.80396 5.85812 5.88169 6.00697 6.14519 6.19300 6.25406 6.36718 6.50170 6.63407 6.72394 6.94382 7.12113 7.28776 7.46893 7.63017 7.92297 8.32553 8.99184 9.65613 10.60125 11.35926 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028739 B = 0.003247 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.058781 B = 8622.347619 C = 9401.297191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 H 0.087 0.913 4 C 0.065 3.935 5 O -0.383 6.383 6 C 0.063 3.937 7 C -0.150 4.150 8 C -0.106 4.106 9 H 0.096 0.904 10 C 0.516 3.484 11 O -0.540 6.540 12 N -0.721 5.721 13 C 0.133 3.867 14 C -0.160 4.160 15 C 0.127 3.873 16 N -0.610 5.610 17 C -0.221 4.221 18 H 0.082 0.918 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.169 3.831 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.401 0.599 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.041 0.959 40 H 0.034 0.966 41 H 0.254 0.746 42 H 0.030 0.970 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 -4.554 -18.327 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.124 4.124 3 H 0.105 0.895 4 C -0.012 4.012 5 O -0.302 6.302 6 C -0.014 4.014 7 C -0.188 4.188 8 C -0.128 4.128 9 H 0.114 0.886 10 C 0.302 3.698 11 O -0.418 6.418 12 N -0.372 5.372 13 C 0.009 3.991 14 C -0.180 4.180 15 C 0.000 4.000 16 N -0.336 5.336 17 C -0.348 4.348 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.743 3.257 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.043 3.957 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.235 0.765 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.047 0.953 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.284 -3.771 -18.244 20.003 hybrid contribution 0.610 -0.624 1.286 1.554 sum -6.674 -4.394 -16.958 18.747 Atomic orbital electron populations 1.21907 0.93903 1.01563 1.03681 1.21565 0.97024 1.00812 0.93007 0.89505 1.22709 0.80877 0.99597 0.97977 1.87944 1.20427 1.76381 1.45408 1.22588 0.99448 0.94365 0.85000 1.22228 0.93698 1.03403 0.99448 1.21446 0.97066 1.00561 0.93682 0.88623 1.20447 0.79580 0.85232 0.84523 1.90643 1.39305 1.25162 1.86701 1.46097 1.55725 1.29504 1.05847 1.21354 0.99101 0.95850 0.82752 1.23658 1.01809 0.99866 0.92690 1.22318 0.90422 0.97007 0.90267 1.45654 1.02305 1.82489 1.03114 1.18940 0.89958 1.41888 0.84011 0.90070 1.24832 0.95834 1.01846 0.97890 1.69842 1.03093 1.53621 1.30058 0.86123 0.78456 0.78207 0.82866 1.21418 1.21611 1.20659 1.22083 0.92203 0.97676 0.83739 0.89853 0.92703 0.93324 0.88662 0.93173 0.88385 0.92952 0.90165 0.89860 0.76526 0.91916 0.91376 0.88955 0.94026 0.94827 0.93584 0.95267 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.93 37.15 0.33 -1.17 16 2 C -0.10 -1.06 2.05 -90.47 -0.19 -1.25 16 3 H 0.09 1.05 8.03 -51.93 -0.42 0.64 16 4 C 0.07 0.57 6.13 37.21 0.23 0.79 16 5 O -0.38 -4.00 10.77 -35.23 -0.38 -4.38 16 6 C 0.06 0.53 6.84 37.21 0.25 0.78 16 7 C -0.15 -1.38 5.30 -26.60 -0.14 -1.52 16 8 C -0.11 -1.06 2.11 -91.59 -0.19 -1.26 16 9 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 10 C 0.52 6.84 6.88 -10.98 -0.08 6.77 16 11 O -0.54 -8.97 13.87 5.56 0.08 -8.90 16 12 N -0.72 -9.27 5.46 -60.29 -0.33 -9.60 16 13 C 0.13 2.01 5.59 -4.04 -0.02 1.99 16 14 C -0.16 -2.78 4.11 -89.97 -0.37 -3.15 16 15 C 0.13 2.55 8.25 -8.50 -0.07 2.48 16 16 N -0.61 -15.57 3.76 -184.57 -0.69 -16.26 16 17 C -0.22 -6.19 10.73 -15.06 -0.16 -6.35 16 18 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 20 N -0.92 -27.17 11.81 55.49 0.66 -26.52 16 21 Si 0.91 21.97 29.56 -169.99 -5.02 16.94 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 C 0.17 3.83 6.81 -8.37 -0.06 3.77 16 26 H 0.08 1.04 5.80 -51.93 -0.30 0.74 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.68 7.68 -51.93 -0.40 0.28 16 35 H 0.40 4.36 7.97 -40.82 -0.33 4.03 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.14 7.81 -51.93 -0.41 0.73 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.03 0.70 7.88 -51.93 -0.41 0.29 16 43 H 0.06 1.46 7.57 -51.93 -0.39 1.07 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -32.78 342.35 -8.36 -41.15 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.27 Total: 0.81 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -0.56 Total: 1.59 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.37 Total: -52.38 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.30 Total: -13.27 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.78 -8.36 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031957767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.811 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds