Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47103 * 2 1 4 4 C 1.34779 * 119.99780 * 87.72643 * 3 2 1 5 5 O 1.21279 * 119.99389 * 185.62103 * 4 3 2 6 6 C 1.50694 * 120.00061 * 5.62045 * 4 3 2 7 7 H 1.09006 * 109.82152 * 46.80926 * 6 4 3 8 8 C 1.54378 * 109.83229 * 285.82326 * 6 4 3 9 9 C 1.55304 * 102.25464 * 219.13120 * 8 6 4 10 10 C 1.54947 * 100.93917 * 34.13167 * 9 8 6 11 11 O 1.43245 * 109.83087 * 167.68964 * 6 4 3 12 12 C 1.46503 * 119.99837 * 267.72452 * 3 2 1 13 13 H 1.08997 * 110.77878 * 179.47074 * 12 3 2 14 14 C 1.55151 * 110.72141 * 56.23307 * 12 3 2 15 15 C 1.54909 * 101.58300 * 277.13727 * 14 12 3 16 16 N 1.47423 * 104.83156 * 322.99352 * 15 14 12 17 17 C 1.36937 * 125.64913 * 204.08786 * 16 15 14 18 18 H 1.07997 * 120.00259 * 166.20147 * 17 16 15 19 19 C 1.38814 * 119.99649 * 346.19883 * 17 16 15 20 20 N 1.31616 * 120.00115 * 0.25308 * 19 17 16 21 21 Si 1.86799 * 119.99974 * 180.25116 * 19 17 16 22 22 H 1.48504 * 109.47018 * 84.99290 * 21 19 17 23 23 H 1.48497 * 109.47358 * 204.98962 * 21 19 17 24 24 H 1.48502 * 109.47339 * 324.98989 * 21 19 17 25 25 C 1.47019 * 108.70636 * 24.12502 * 16 15 14 26 26 H 1.09003 * 109.47443 * 307.73273 * 1 2 3 27 27 H 1.08997 * 109.47288 * 67.73320 * 1 2 3 28 28 H 1.09004 * 109.46915 * 187.73259 * 1 2 3 29 29 H 1.09001 * 109.47453 * 239.99718 * 2 1 3 30 30 H 1.09003 * 109.47298 * 120.00251 * 2 1 3 31 31 H 1.08998 * 110.84864 * 337.32611 * 8 6 4 32 32 H 1.09008 * 110.84474 * 100.94283 * 8 6 4 33 33 H 1.09009 * 111.12309 * 276.21641 * 9 8 6 34 34 H 1.08998 * 111.16126 * 152.07163 * 9 8 6 35 35 H 1.09007 * 110.30838 * 204.63619 * 10 9 8 36 36 H 1.08998 * 110.30758 * 82.47548 * 10 9 8 37 37 H 1.09000 * 111.00352 * 35.21093 * 14 12 3 38 38 H 1.09000 * 111.00432 * 159.05898 * 14 12 3 39 39 H 1.09006 * 110.36516 * 81.82488 * 15 14 12 40 40 H 1.08993 * 110.37035 * 204.15052 * 15 14 12 41 41 H 0.97005 * 120.00170 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.88370 * 239.53172 * 25 16 15 43 43 H 1.08997 * 110.01335 * 118.43292 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1992 2.0320 1.1663 5 8 2.5050 3.2056 1.1647 6 6 2.0216 1.3013 2.4723 7 1 2.5449 0.3458 2.4354 8 6 0.5195 1.0681 2.7418 9 6 0.4172 1.3132 4.2720 10 6 1.4796 2.4248 4.4633 11 8 2.5360 2.0958 3.5475 12 6 2.3099 2.0550 -1.2678 13 1 2.6531 3.0748 -1.0937 14 6 1.0650 2.0454 -2.1937 15 6 1.1686 0.6412 -2.8395 16 7 2.6130 0.4227 -3.0381 17 6 3.1733 -0.4206 -3.9601 18 1 4.2274 -0.3516 -4.1846 19 6 2.3863 -1.3641 -4.6061 20 7 1.1006 -1.4448 -4.3361 21 14 3.1519 -2.5192 -5.8587 22 1 3.7343 -3.6924 -5.1589 23 1 2.1091 -2.9783 -6.8109 24 1 4.2210 -1.8052 -6.6019 25 6 3.3522 1.2596 -2.0817 26 1 -0.3634 0.6289 0.8128 27 1 -0.3634 0.3894 -0.9510 28 1 -0.3633 -1.0184 0.1383 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 -0.0893 1.7861 2.1923 32 1 0.2350 0.0457 2.4928 33 1 0.6819 0.4163 4.8321 34 1 -0.5760 1.6671 4.5482 35 1 1.8518 2.4201 5.4878 36 1 1.0561 3.3989 4.2184 37 1 0.1467 2.1423 -1.6146 38 1 1.1334 2.8287 -2.9485 39 1 0.7591 -0.1154 -2.1701 40 1 0.6473 0.6244 -3.7966 41 1 0.5506 -2.1040 -4.7878 42 1 4.0062 1.9467 -2.6186 43 1 3.9424 0.6312 -1.4147 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033736096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = -36.717992 kcal Electronic energy + Delta-G solvation = -24054.126832 eV Core-core repulsion = 20714.867411 eV Total energy + Delta-G solvation = -3339.259421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.60150 -38.84805 -37.16192 -34.86539 -32.62882 -32.00603 -30.51924 -29.89372 -28.99026 -27.02028 -24.67401 -23.58166 -22.99337 -21.88936 -20.50399 -20.15259 -18.44366 -17.77956 -16.99876 -16.48852 -16.07871 -15.71734 -14.74342 -14.70479 -14.54152 -13.85059 -13.74247 -13.55049 -13.29269 -12.92057 -12.61984 -12.31003 -12.16113 -11.85442 -11.78214 -11.61514 -11.43908 -11.36661 -11.19998 -10.98957 -10.88902 -10.72743 -10.45710 -10.32043 -10.15303 -10.03737 -9.90294 -9.69906 -9.01842 -8.60672 -8.25231 -6.80001 -5.78511 -3.13486 2.77363 3.13382 3.37140 3.43066 3.44099 3.84573 4.24537 4.46386 4.52588 4.62185 4.89610 4.97210 5.15145 5.30790 5.40030 5.42319 5.45938 5.49290 5.52054 5.59947 5.62016 5.65653 5.73356 5.76671 5.85965 5.91445 6.05781 6.19102 6.30517 6.39937 6.48870 6.62078 6.65220 6.73378 6.79140 7.10454 7.48179 7.56728 7.75650 7.77945 8.24255 8.45754 9.16699 9.76897 10.45309 11.33482 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.004521 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.500223 B = 6191.818624 C = 6442.731434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.091 3.909 3 N -0.587 5.587 4 C 0.501 3.499 5 O -0.537 6.537 6 C 0.067 3.933 7 H 0.105 0.895 8 C -0.145 4.145 9 C -0.156 4.156 10 C 0.049 3.951 11 O -0.355 6.355 12 C 0.127 3.873 13 H 0.098 0.902 14 C -0.159 4.159 15 C 0.159 3.841 16 N -0.602 5.602 17 C -0.229 4.229 18 H 0.074 0.926 19 C -0.003 4.003 20 N -0.919 5.919 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.126 3.874 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.253 0.747 42 H 0.032 0.968 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 2.955 14.974 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.031 4.031 3 N -0.320 5.320 4 C 0.288 3.712 5 O -0.414 6.414 6 C 0.005 3.995 7 H 0.122 0.878 8 C -0.183 4.183 9 C -0.194 4.194 10 C -0.028 4.028 11 O -0.273 6.273 12 C 0.024 3.976 13 H 0.116 0.884 14 C -0.199 4.199 15 C 0.034 3.966 16 N -0.329 5.329 17 C -0.357 4.357 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.566 5.566 21 Si 0.741 3.259 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.001 4.001 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.927 3.479 14.848 15.748 hybrid contribution 0.144 -0.821 -0.775 1.138 sum -3.784 2.658 14.073 14.813 Atomic orbital electron populations 1.22690 0.95976 1.02183 1.03527 1.21874 0.94617 0.82182 1.04442 1.47930 1.64457 1.14361 1.05290 1.20875 0.77367 0.87493 0.85480 1.90655 1.47615 1.15888 1.87240 1.22659 0.95791 0.94402 0.86607 0.87789 1.23345 0.94375 1.04109 0.96440 1.23311 1.00432 0.99767 0.95853 1.23439 0.87877 0.97657 0.93821 1.88501 1.32399 1.71966 1.34431 1.22089 0.96703 0.96598 0.82246 0.88392 1.23418 0.96353 1.01826 0.98283 1.21832 0.85777 0.89348 0.99623 1.44482 1.01381 1.48822 1.38179 1.19003 0.93893 1.08764 1.14060 0.90797 1.24842 0.96013 0.98502 1.00643 1.69912 1.04202 1.37195 1.45288 0.86165 0.77990 0.81018 0.80733 1.21505 1.21690 1.20758 1.21648 0.93525 0.93458 0.91429 0.92483 0.90477 0.91753 0.86729 0.91770 0.89722 0.88413 0.90023 0.89607 0.89452 0.92003 0.91780 0.91283 0.93686 0.91164 0.93703 0.95042 0.95416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 8.26 37.15 0.31 -2.21 16 2 C 0.09 1.40 4.73 -4.04 -0.02 1.39 16 3 N -0.59 -9.87 2.44 -164.03 -0.40 -10.27 16 4 C 0.50 8.54 6.85 -10.99 -0.08 8.47 16 5 O -0.54 -11.10 15.95 -13.80 -0.22 -11.32 16 6 C 0.07 0.89 3.08 -27.16 -0.08 0.81 16 7 H 0.10 1.26 6.89 -51.93 -0.36 0.90 16 8 C -0.15 -1.47 4.24 -24.79 -0.11 -1.58 16 9 C -0.16 -1.28 7.16 -24.48 -0.18 -1.45 16 10 C 0.05 0.51 7.78 38.19 0.30 0.81 16 11 O -0.36 -5.22 10.59 -54.58 -0.58 -5.80 16 12 C 0.13 2.38 3.58 -66.09 -0.24 2.14 16 13 H 0.10 1.88 7.01 -51.93 -0.36 1.52 16 14 C -0.16 -2.99 6.11 -24.59 -0.15 -3.14 16 15 C 0.16 3.57 4.20 -2.53 -0.01 3.56 16 16 N -0.60 -14.69 2.95 -170.08 -0.50 -15.19 16 17 C -0.23 -6.17 10.24 -15.06 -0.15 -6.32 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C 0.00 -0.09 5.47 -17.43 -0.10 -0.19 16 20 N -0.92 -25.50 10.54 55.49 0.58 -24.92 16 21 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.13 2.66 6.22 -3.06 -0.02 2.64 16 26 H 0.06 0.66 4.45 -51.93 -0.23 0.43 16 27 H 0.08 1.21 4.65 -51.93 -0.24 0.97 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.11 2.22 5.09 -51.93 -0.26 1.95 16 30 H 0.06 0.82 6.05 -51.93 -0.31 0.51 16 31 H 0.08 0.93 6.87 -51.93 -0.36 0.57 16 32 H 0.10 0.84 6.68 -51.92 -0.35 0.49 16 33 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 1.10 6.78 -51.93 -0.35 0.75 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.05 1.02 3.88 -51.93 -0.20 0.82 16 40 H 0.07 1.82 6.86 -51.93 -0.36 1.46 16 41 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -31.28 317.63 -8.18 -39.46 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.31 Total: 1.87 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.52 Total: 4.92 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.32 Total: -50.37 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.80 Total: -17.12 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.28 -8.18 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033736096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.744 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds