Wall clock time and date at job start Tue Mar 31 2020 06:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47103 * 2 1 4 4 C 1.34779 * 119.99780 * 87.72643 * 3 2 1 5 5 O 1.21279 * 119.99389 * 185.62103 * 4 3 2 6 6 C 1.50694 * 120.00061 * 5.62045 * 4 3 2 7 7 H 1.09006 * 109.82152 * 46.80926 * 6 4 3 8 8 C 1.54378 * 109.83229 * 285.82326 * 6 4 3 9 9 C 1.55304 * 102.25464 * 219.13120 * 8 6 4 10 10 C 1.54947 * 100.93917 * 34.13167 * 9 8 6 11 11 O 1.43245 * 109.83087 * 167.68964 * 6 4 3 12 12 C 1.46503 * 119.99837 * 267.72452 * 3 2 1 13 13 H 1.08997 * 110.77878 * 179.47074 * 12 3 2 14 14 C 1.55151 * 110.72141 * 56.23307 * 12 3 2 15 15 C 1.54909 * 101.58300 * 277.13727 * 14 12 3 16 16 N 1.47423 * 104.83156 * 322.99352 * 15 14 12 17 17 C 1.36937 * 125.64913 * 204.08786 * 16 15 14 18 18 H 1.07997 * 120.00259 * 166.20147 * 17 16 15 19 19 C 1.38814 * 119.99649 * 346.19883 * 17 16 15 20 20 N 1.31616 * 120.00115 * 0.25308 * 19 17 16 21 21 Si 1.86799 * 119.99974 * 180.25116 * 19 17 16 22 22 H 1.48504 * 109.47018 * 84.99290 * 21 19 17 23 23 H 1.48497 * 109.47358 * 204.98962 * 21 19 17 24 24 H 1.48502 * 109.47339 * 324.98989 * 21 19 17 25 25 C 1.47019 * 108.70636 * 24.12502 * 16 15 14 26 26 H 1.09003 * 109.47443 * 307.73273 * 1 2 3 27 27 H 1.08997 * 109.47288 * 67.73320 * 1 2 3 28 28 H 1.09004 * 109.46915 * 187.73259 * 1 2 3 29 29 H 1.09001 * 109.47453 * 239.99718 * 2 1 3 30 30 H 1.09003 * 109.47298 * 120.00251 * 2 1 3 31 31 H 1.08998 * 110.84864 * 337.32611 * 8 6 4 32 32 H 1.09008 * 110.84474 * 100.94283 * 8 6 4 33 33 H 1.09009 * 111.12309 * 276.21641 * 9 8 6 34 34 H 1.08998 * 111.16126 * 152.07163 * 9 8 6 35 35 H 1.09007 * 110.30838 * 204.63619 * 10 9 8 36 36 H 1.08998 * 110.30758 * 82.47548 * 10 9 8 37 37 H 1.09000 * 111.00352 * 35.21093 * 14 12 3 38 38 H 1.09000 * 111.00432 * 159.05898 * 14 12 3 39 39 H 1.09006 * 110.36516 * 81.82488 * 15 14 12 40 40 H 1.08993 * 110.37035 * 204.15052 * 15 14 12 41 41 H 0.97005 * 120.00170 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.88370 * 239.53172 * 25 16 15 43 43 H 1.08997 * 110.01335 * 118.43292 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1992 2.0320 1.1663 5 8 2.5050 3.2056 1.1647 6 6 2.0216 1.3013 2.4723 7 1 2.5449 0.3458 2.4354 8 6 0.5195 1.0681 2.7418 9 6 0.4172 1.3132 4.2720 10 6 1.4796 2.4248 4.4633 11 8 2.5360 2.0958 3.5475 12 6 2.3099 2.0550 -1.2678 13 1 2.6531 3.0748 -1.0937 14 6 1.0650 2.0454 -2.1937 15 6 1.1686 0.6412 -2.8395 16 7 2.6130 0.4227 -3.0381 17 6 3.1733 -0.4206 -3.9601 18 1 4.2274 -0.3516 -4.1846 19 6 2.3863 -1.3641 -4.6061 20 7 1.1006 -1.4448 -4.3361 21 14 3.1519 -2.5192 -5.8587 22 1 3.7343 -3.6924 -5.1589 23 1 2.1091 -2.9783 -6.8109 24 1 4.2210 -1.8052 -6.6019 25 6 3.3522 1.2596 -2.0817 26 1 -0.3634 0.6289 0.8128 27 1 -0.3634 0.3894 -0.9510 28 1 -0.3633 -1.0184 0.1383 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 -0.0893 1.7861 2.1923 32 1 0.2350 0.0457 2.4928 33 1 0.6819 0.4163 4.8321 34 1 -0.5760 1.6671 4.5482 35 1 1.8518 2.4201 5.4878 36 1 1.0561 3.3989 4.2184 37 1 0.1467 2.1423 -1.6146 38 1 1.1334 2.8287 -2.9485 39 1 0.7591 -0.1154 -2.1701 40 1 0.6473 0.6244 -3.7966 41 1 0.5506 -2.1040 -4.7878 42 1 4.0062 1.9467 -2.6186 43 1 3.9424 0.6312 -1.4147 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033736096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:31 Heat of formation + Delta-G solvation = -55.883004 kcal Electronic energy + Delta-G solvation = -24054.957889 eV Core-core repulsion = 20714.867411 eV Total energy + Delta-G solvation = -3340.090479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.83676 -40.07995 -38.63613 -36.39063 -34.30567 -33.06470 -31.87806 -31.29256 -30.38834 -28.64026 -26.51220 -24.68110 -24.25436 -22.66060 -22.09163 -21.79744 -19.80878 -18.95109 -18.87946 -17.65683 -17.28507 -16.81142 -16.69075 -15.94162 -15.90034 -15.65973 -14.96204 -14.67232 -14.31038 -14.21844 -14.08454 -13.78072 -13.50931 -13.36048 -13.16023 -12.94706 -12.81063 -12.72341 -12.60882 -12.28239 -12.13304 -12.04239 -11.88516 -11.84829 -11.79090 -11.60186 -11.51890 -11.19605 -10.61654 -10.25844 -9.68048 -8.77865 -7.84596 -5.21036 1.48415 1.49438 1.49801 1.57723 1.85296 2.50970 2.91844 3.33369 3.34762 3.52814 3.71590 3.81610 3.86314 4.00779 4.06801 4.12456 4.19767 4.28893 4.42288 4.45273 4.60642 4.65486 4.69193 4.75705 4.77540 4.85813 4.88269 4.93963 4.96787 5.00539 5.00723 5.20415 5.22038 5.43219 5.49412 5.61198 5.68039 5.84548 5.91513 6.25084 6.45012 7.11611 7.13531 7.77340 8.45213 9.25568 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031756 B = 0.004521 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.500223 B = 6191.818624 C = 6442.731434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.094 3.906 3 N -0.585 5.585 4 C 0.497 3.503 5 O -0.580 6.580 6 C 0.067 3.933 7 H 0.121 0.879 8 C -0.143 4.143 9 C -0.142 4.142 10 C 0.037 3.963 11 O -0.386 6.386 12 C 0.137 3.863 13 H 0.095 0.905 14 C -0.144 4.144 15 C 0.168 3.832 16 N -0.617 5.617 17 C -0.247 4.247 18 H 0.071 0.929 19 C -0.049 4.049 20 N -0.938 5.938 21 Si 0.972 3.028 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.277 1.277 25 C 0.128 3.872 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.032 0.968 41 H 0.249 0.751 42 H 0.029 0.971 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 2.086 16.829 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.028 4.028 3 N -0.318 5.318 4 C 0.286 3.714 5 O -0.460 6.460 6 C 0.006 3.994 7 H 0.138 0.862 8 C -0.181 4.181 9 C -0.179 4.179 10 C -0.039 4.039 11 O -0.305 6.305 12 C 0.032 3.968 13 H 0.113 0.887 14 C -0.183 4.183 15 C 0.044 3.956 16 N -0.344 5.344 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.243 4.243 20 N -0.586 5.586 21 Si 0.801 3.199 22 H -0.210 1.210 23 H -0.219 1.219 24 H -0.203 1.203 25 C 0.002 3.998 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.138 0.862 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.724 2.605 16.723 17.572 hybrid contribution 0.435 -0.508 -1.325 1.484 sum -4.289 2.098 15.398 16.121 Atomic orbital electron populations 1.22623 0.94302 1.03633 1.03116 1.21892 0.95926 0.81011 1.03972 1.47966 1.64297 1.14851 1.04648 1.21668 0.76006 0.87155 0.86528 1.90630 1.49566 1.17919 1.87865 1.22785 0.98376 0.93922 0.84282 0.86206 1.23397 0.91565 1.05139 0.97956 1.23309 1.00706 0.99575 0.94336 1.23704 0.88036 0.98176 0.94007 1.88477 1.34547 1.72313 1.35123 1.21827 0.95737 0.96163 0.83047 0.88704 1.23270 0.97328 0.99463 0.98243 1.21664 0.84506 0.91540 0.97891 1.44661 1.02474 1.48827 1.38439 1.19276 0.94036 1.09484 1.14847 0.91139 1.25536 0.96496 0.99851 1.02465 1.70083 1.05020 1.37466 1.46029 0.85205 0.77113 0.79087 0.78499 1.21029 1.21922 1.20273 1.21672 0.93979 0.93051 0.91096 0.90091 0.92888 0.90088 0.90700 0.88653 0.90585 0.86151 0.88131 0.87467 0.87438 0.93015 0.89792 0.91168 0.93547 0.94990 0.94145 0.95312 0.95889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.45 8.26 71.98 0.59 -3.85 16 2 C 0.09 2.75 4.73 86.38 0.41 3.15 16 3 N -0.59 -19.15 2.44 -791.26 -1.93 -21.09 16 4 C 0.50 16.45 6.85 87.65 0.60 17.05 16 5 O -0.58 -23.96 15.95 15.48 0.25 -23.71 16 6 C 0.07 1.65 3.08 30.31 0.09 1.75 16 7 H 0.12 2.54 6.89 -2.38 -0.02 2.53 16 8 C -0.14 -2.39 4.24 31.85 0.13 -2.26 16 9 C -0.14 -1.76 7.16 32.05 0.23 -1.53 16 10 C 0.04 0.68 7.78 72.65 0.56 1.24 16 11 O -0.39 -10.72 10.59 -130.48 -1.38 -12.10 16 12 C 0.14 5.12 3.58 46.18 0.17 5.29 16 13 H 0.09 3.66 7.01 -2.39 -0.02 3.65 16 14 C -0.14 -5.39 6.11 31.98 0.20 -5.19 16 15 C 0.17 7.72 4.20 86.86 0.36 8.09 16 16 N -0.62 -30.76 2.95 -692.00 -2.04 -32.80 16 17 C -0.25 -13.58 10.24 84.03 0.86 -12.72 16 18 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 19 C -0.05 -2.68 5.47 84.86 0.46 -2.21 16 20 N -0.94 -52.89 10.54 21.65 0.23 -52.66 16 21 Si 0.97 44.41 29.55 68.60 2.03 46.44 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 C 0.13 5.51 6.22 86.73 0.54 6.05 16 26 H 0.08 1.62 4.45 -2.39 -0.01 1.61 16 27 H 0.05 1.59 4.65 -2.39 -0.01 1.58 16 28 H 0.08 1.75 8.14 -2.38 -0.02 1.74 16 29 H 0.07 2.87 5.09 -2.39 -0.01 2.86 16 30 H 0.10 2.17 6.05 -2.39 -0.01 2.16 16 31 H 0.08 1.43 6.87 -2.39 -0.02 1.42 16 32 H 0.12 1.48 6.68 -2.38 -0.02 1.47 16 33 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 2.81 6.78 -2.39 -0.02 2.79 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.05 2.13 3.88 -2.38 -0.01 2.12 16 40 H 0.03 1.70 6.86 -2.39 -0.02 1.68 16 41 H 0.25 13.69 8.31 -92.70 -0.77 12.92 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.02 1.01 8.03 -2.39 -0.02 0.99 16 Total: -1.00 -69.33 317.63 3.38 -65.95 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.02 Total: 15.11 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 5.22 Total: 14.86 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -3.74 Total: -106.55 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -1.14 Total: -35.81 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -69.33 3.38 -65.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033736096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.068 kcal (2) G-P(sol) polarization free energy of solvation -69.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds