Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46859 * 2 1 4 4 C 1.34774 * 119.99661 * 83.41059 * 3 2 1 5 5 O 1.21285 * 120.00138 * 185.61799 * 4 3 2 6 6 C 1.50696 * 120.00215 * 5.61273 * 4 3 2 7 7 H 1.08997 * 109.87485 * 307.45384 * 6 4 3 8 8 C 1.54103 * 109.87867 * 68.45859 * 6 4 3 9 9 C 1.54815 * 104.18876 * 121.45245 * 8 6 4 10 10 C 1.54995 * 102.09127 * 20.88404 * 9 8 6 11 11 O 1.43749 * 109.87976 * 186.44161 * 6 4 3 12 12 C 1.46500 * 120.00019 * 263.40359 * 3 2 1 13 13 H 1.09002 * 110.88383 * 169.60404 * 12 3 2 14 14 C 1.55150 * 111.00791 * 293.48538 * 12 3 2 15 15 C 1.54325 * 102.94079 * 82.61146 * 14 12 3 16 16 N 1.47015 * 107.27203 * 22.19352 * 15 14 12 17 17 C 1.36942 * 125.64906 * 180.79287 * 16 15 14 18 18 H 1.08004 * 119.99839 * 180.02562 * 17 16 15 19 19 C 1.38809 * 120.00034 * 0.02855 * 17 16 15 20 20 N 1.31623 * 119.99783 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00174 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46852 * 89.99548 * 21 19 17 23 23 H 1.48498 * 109.47294 * 209.99515 * 21 19 17 24 24 H 1.48495 * 109.47107 * 330.00045 * 21 19 17 25 25 C 1.47427 * 108.70413 * 1.06091 * 16 15 14 26 26 H 1.08997 * 109.46940 * 302.19320 * 1 2 3 27 27 H 1.08996 * 109.47315 * 62.19568 * 1 2 3 28 28 H 1.08996 * 109.47025 * 182.19487 * 1 2 3 29 29 H 1.09001 * 109.47110 * 240.00216 * 2 1 3 30 30 H 1.08992 * 109.47159 * 120.00488 * 2 1 3 31 31 H 1.08995 * 110.49175 * 240.12825 * 8 6 4 32 32 H 1.09003 * 110.48277 * 2.77751 * 8 6 4 33 33 H 1.08999 * 110.90567 * 139.08030 * 9 8 6 34 34 H 1.09006 * 110.90612 * 262.65273 * 9 8 6 35 35 H 1.08995 * 110.61827 * 81.47844 * 10 9 8 36 36 H 1.09005 * 110.61373 * 204.48079 * 10 9 8 37 37 H 1.09008 * 110.72189 * 324.25377 * 14 12 3 38 38 H 1.08996 * 110.87774 * 201.04837 * 14 12 3 39 39 H 1.09005 * 109.88152 * 262.77653 * 15 14 12 40 40 H 1.08996 * 110.01053 * 141.68725 * 15 14 12 41 41 H 0.97007 * 119.99859 * 179.97438 * 20 19 17 42 42 H 1.08999 * 110.36882 * 94.70834 * 25 16 15 43 43 H 1.09001 * 110.36504 * 217.03152 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1166 2.0612 1.1595 5 8 2.4228 3.2347 1.1503 6 6 1.8460 1.3634 2.4675 7 1 0.8765 0.8667 2.4288 8 6 2.9535 0.3295 2.7488 9 6 3.5509 0.7732 4.1063 10 6 2.4076 1.6369 4.6974 11 8 1.8641 2.3169 3.5431 12 6 2.3999 2.0233 -1.2603 13 1 2.5638 3.0915 -1.1182 14 6 3.6535 1.3449 -1.8729 15 6 3.0614 0.1241 -2.6082 16 7 1.6450 0.4177 -2.8710 17 6 0.7584 -0.4201 -3.4935 18 1 -0.2657 -0.1100 -3.6401 19 6 1.1760 -1.6677 -3.9359 20 7 2.4243 -2.0453 -3.7576 21 14 -0.0334 -2.8108 -4.7844 22 1 -0.0093 -2.5590 -6.2477 23 1 0.3482 -4.2211 -4.5184 24 1 -1.4007 -2.5610 -4.2617 25 6 1.3387 1.7659 -2.3591 26 1 -0.3633 0.5475 0.8697 27 1 -0.3634 0.4793 -0.9090 28 1 -0.3633 -1.0269 0.0394 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.5299 -0.6717 2.8275 32 1 3.7137 0.3629 1.9683 33 1 3.7556 -0.0886 4.7415 34 1 4.4522 1.3683 3.9588 35 1 1.6496 1.0052 5.1606 36 1 2.8017 2.3553 5.4162 37 1 4.3415 1.0268 -1.0895 38 1 4.1528 2.0129 -2.5747 39 1 3.1459 -0.7633 -1.9809 40 1 3.5876 -0.0358 -3.5492 41 1 2.7160 -2.9174 -4.0665 42 1 1.4307 2.5041 -3.1558 43 1 0.3363 1.7907 -1.9317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033736097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -56.336960 kcal Electronic energy + Delta-G solvation = -24222.314073 eV Core-core repulsion = 20882.203910 eV Total energy + Delta-G solvation = -3340.110164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.75601 -40.04488 -38.65486 -36.22233 -34.31845 -33.04441 -31.91068 -30.79750 -30.41768 -28.88403 -26.38227 -25.09347 -23.79781 -22.59153 -22.03064 -21.89464 -20.02940 -18.84694 -18.50167 -17.65876 -17.36185 -16.67288 -16.39573 -16.15842 -15.75656 -15.31032 -15.27194 -14.63747 -14.44519 -14.34835 -14.06177 -13.73611 -13.69132 -13.41375 -12.94854 -12.81243 -12.75657 -12.67142 -12.64512 -12.36761 -12.16289 -12.00911 -11.96921 -11.95647 -11.78879 -11.50995 -11.34167 -11.00706 -10.65185 -10.41148 -9.65022 -8.80641 -7.78034 -5.11808 1.50643 1.50921 1.52725 1.59731 1.83440 2.54154 2.97663 3.36937 3.42866 3.57099 3.69844 3.82972 3.90005 3.98824 4.05949 4.18099 4.25759 4.30736 4.40024 4.50623 4.58867 4.66023 4.69461 4.75566 4.79980 4.85215 4.89663 4.96293 4.98630 5.00293 5.05823 5.13091 5.24244 5.49164 5.53621 5.63991 5.68869 5.82948 5.84951 6.23631 6.49027 7.13749 7.16830 7.81678 8.47081 9.31999 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025865 B = 0.005084 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.280537 B = 5505.958622 C = 5818.588297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.087 3.913 3 N -0.581 5.581 4 C 0.509 3.491 5 O -0.578 6.578 6 C 0.063 3.937 7 H 0.108 0.892 8 C -0.144 4.144 9 C -0.147 4.147 10 C 0.037 3.963 11 O -0.385 6.385 12 C 0.131 3.869 13 H 0.098 0.902 14 C -0.142 4.142 15 C 0.189 3.811 16 N -0.609 5.609 17 C -0.224 4.224 18 H 0.078 0.922 19 C -0.054 4.054 20 N -0.947 5.947 21 Si 0.966 3.034 22 H -0.295 1.295 23 H -0.296 1.296 24 H -0.270 1.270 25 C 0.125 3.875 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.007 0.993 41 H 0.246 0.754 42 H 0.033 0.967 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 1.792 15.412 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.035 4.035 3 N -0.313 5.313 4 C 0.298 3.702 5 O -0.458 6.458 6 C 0.002 3.998 7 H 0.126 0.874 8 C -0.182 4.182 9 C -0.184 4.184 10 C -0.039 4.039 11 O -0.304 6.304 12 C 0.027 3.973 13 H 0.116 0.884 14 C -0.181 4.181 15 C 0.064 3.936 16 N -0.336 5.336 17 C -0.353 4.353 18 H 0.096 0.904 19 C -0.247 4.247 20 N -0.596 5.596 21 Si 0.796 3.204 22 H -0.223 1.223 23 H -0.223 1.223 24 H -0.195 1.195 25 C -0.001 4.001 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.049 0.951 40 H 0.025 0.975 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.591 2.418 15.311 15.512 hybrid contribution -0.418 -0.805 -1.119 1.440 sum 0.173 1.613 14.192 14.284 Atomic orbital electron populations 1.22095 0.95472 1.02393 1.01285 1.22083 0.95192 0.81191 1.05017 1.47814 1.63405 1.14803 1.05250 1.21092 0.76444 0.86564 0.86148 1.90630 1.49813 1.17585 1.87733 1.22742 1.01887 0.89653 0.85471 0.87434 1.22995 0.96892 0.99253 0.99095 1.23149 0.98542 1.01305 0.95420 1.23947 0.95245 0.96493 0.88194 1.89003 1.85007 1.36112 1.20308 1.22065 0.94981 0.97177 0.83103 0.88407 1.23143 0.96706 0.98541 0.99703 1.20933 0.83702 0.93144 0.95809 1.44654 1.07215 1.13414 1.68319 1.19237 0.91669 0.95155 1.29272 0.90441 1.25376 0.97770 0.99111 1.02445 1.70138 1.16033 1.20593 1.52843 0.85265 0.78919 0.78214 0.78039 1.22300 1.22256 1.19535 1.21991 0.96976 0.87566 0.93530 0.92513 0.93450 0.91099 0.88261 0.89340 0.86852 0.91189 0.86733 0.91197 0.89672 0.87621 0.90840 0.90152 0.95120 0.97496 0.94501 0.94930 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 9.90 71.98 0.71 -4.00 16 2 C 0.09 2.79 4.95 86.38 0.43 3.21 16 3 N -0.58 -19.59 2.53 -790.14 -2.00 -21.59 16 4 C 0.51 17.49 6.75 87.66 0.59 18.08 16 5 O -0.58 -24.39 15.94 15.60 0.25 -24.14 16 6 C 0.06 1.67 2.98 30.22 0.09 1.76 16 7 H 0.11 2.49 6.38 -2.39 -0.02 2.47 16 8 C -0.14 -2.88 4.96 31.59 0.16 -2.72 16 9 C -0.15 -2.34 7.16 31.90 0.23 -2.11 16 10 C 0.04 0.65 7.72 72.66 0.56 1.21 16 11 O -0.39 -11.07 10.76 -130.33 -1.40 -12.47 16 12 C 0.13 4.79 3.64 46.38 0.17 4.96 16 13 H 0.10 3.62 7.06 -2.39 -0.02 3.60 16 14 C -0.14 -5.19 6.56 31.78 0.21 -4.99 16 15 C 0.19 8.60 4.31 86.73 0.37 8.98 16 16 N -0.61 -28.41 2.16 -691.99 -1.50 -29.91 16 17 C -0.22 -11.49 10.28 84.03 0.86 -10.62 16 18 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 19 C -0.05 -2.82 5.49 84.86 0.47 -2.36 16 20 N -0.95 -52.75 10.31 21.65 0.22 -52.52 16 21 Si 0.97 43.31 29.55 68.60 2.03 45.34 16 22 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 23 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 25 C 0.13 5.00 6.10 86.85 0.53 5.53 16 26 H 0.06 1.49 6.83 -2.39 -0.02 1.47 16 27 H 0.05 1.69 5.82 -2.39 -0.01 1.67 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.10 4.00 3.69 -2.39 -0.01 3.99 16 30 H 0.09 2.29 5.16 -2.39 -0.01 2.28 16 31 H 0.11 1.67 7.66 -2.39 -0.02 1.66 16 32 H 0.07 1.62 7.69 -2.39 -0.02 1.60 16 33 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.24 8.14 -2.38 -0.02 1.23 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.03 1.52 5.87 -2.38 -0.01 1.51 16 40 H 0.01 0.36 7.48 -2.39 -0.02 0.34 16 41 H 0.25 13.51 8.31 -92.70 -0.77 12.74 16 42 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.05 1.99 6.11 -2.39 -0.01 1.97 16 Total: -1.00 -65.87 324.39 3.99 -61.89 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 1.01 Total: 16.46 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 5.38 Total: 16.94 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -3.27 Total: -104.01 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -1.15 Total: -36.61 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -65.87 3.99 -61.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033736097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.549 kcal (2) G-P(sol) polarization free energy of solvation -65.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds