Wall clock time and date at job start Tue Mar 31 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47372 * 2 1 4 4 C 1.34771 * 120.00121 * 275.49074 * 3 2 1 5 5 O 1.21287 * 119.99899 * 184.72024 * 4 3 2 6 6 C 1.50706 * 120.00061 * 4.71845 * 4 3 2 7 7 H 1.08997 * 110.33131 * 47.80443 * 6 4 3 8 8 C 1.54476 * 110.37229 * 285.54758 * 6 4 3 9 9 C 1.54503 * 104.06282 * 217.19274 * 8 6 4 10 10 C 1.54475 * 104.06689 * 0.02562 * 9 8 6 11 11 O 1.44428 * 110.36902 * 170.16972 * 6 4 3 12 12 C 1.46500 * 119.99668 * 95.48086 * 3 2 1 13 13 H 1.09002 * 110.88297 * 180.89146 * 12 3 2 14 14 C 1.55150 * 111.00907 * 304.77701 * 12 3 2 15 15 C 1.54324 * 102.94227 * 82.57273 * 14 12 3 16 16 N 1.47012 * 107.27210 * 22.19281 * 15 14 12 17 17 C 1.36940 * 125.64997 * 181.02560 * 16 15 14 18 18 H 1.07998 * 120.00035 * 171.68791 * 17 16 15 19 19 C 1.38813 * 119.99998 * 351.68826 * 17 16 15 20 20 N 1.31610 * 120.00405 * 150.87510 * 19 17 16 21 21 Si 1.86799 * 119.99688 * 330.87173 * 19 17 16 22 22 H 1.48495 * 109.47404 * 87.47025 * 21 19 17 23 23 H 1.48505 * 109.47113 * 207.47172 * 21 19 17 24 24 H 1.48504 * 109.47196 * 327.47065 * 21 19 17 25 25 C 1.47420 * 108.70628 * 1.28786 * 16 15 14 26 26 H 1.08998 * 109.46832 * 185.00498 * 1 2 3 27 27 H 1.08995 * 109.46680 * 304.99719 * 1 2 3 28 28 H 1.08997 * 109.47349 * 65.00042 * 1 2 3 29 29 H 1.09009 * 109.47007 * 240.00447 * 2 1 3 30 30 H 1.09000 * 109.47846 * 120.00616 * 2 1 3 31 31 H 1.09006 * 110.51210 * 335.83567 * 8 6 4 32 32 H 1.08995 * 110.50988 * 98.40545 * 8 6 4 33 33 H 1.09001 * 110.51008 * 118.64853 * 9 8 6 34 34 H 1.09006 * 110.51059 * 241.35139 * 9 8 6 35 35 H 1.08993 * 110.37647 * 142.80878 * 10 9 8 36 36 H 1.09002 * 110.37284 * 265.04466 * 10 9 8 37 37 H 1.09001 * 110.72115 * 324.20701 * 14 12 3 38 38 H 1.09003 * 110.72213 * 200.93644 * 14 12 3 39 39 H 1.09008 * 109.88195 * 262.77433 * 15 14 12 40 40 H 1.08995 * 110.01322 * 141.68586 * 15 14 12 41 41 H 0.97004 * 119.99804 * 5.00768 * 20 19 17 42 42 H 1.09002 * 110.36518 * 94.48122 * 25 16 15 43 43 H 1.09001 * 110.37515 * 216.80851 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1378 2.0538 -1.1618 5 8 2.6221 3.1657 -1.1718 6 6 1.6696 1.4242 -2.4485 7 1 0.6712 1.0051 -2.3237 8 6 2.6597 0.3290 -2.9028 9 6 2.6868 0.4623 -4.4418 10 6 1.7103 1.6227 -4.7354 11 8 1.6793 2.3964 -3.5165 12 6 2.3769 2.0313 1.2630 13 1 2.7052 3.0567 1.0927 14 6 1.1951 1.9853 2.2673 15 6 1.3239 0.5783 2.8882 16 7 2.7156 0.1438 2.6998 17 6 3.2360 -1.0603 3.0932 18 1 4.2342 -1.3415 2.7919 19 6 2.4803 -1.9194 3.8792 20 7 2.6668 -3.2198 3.7994 21 14 1.1988 -1.2299 5.0503 22 1 -0.0907 -1.0660 4.3324 23 1 1.0157 -2.1644 6.1898 24 1 1.6527 0.0891 5.5599 25 6 3.4599 1.2214 2.0230 26 1 -0.3633 -1.0237 0.0897 27 1 -0.3632 0.5894 0.8418 28 1 -0.3634 0.4343 -0.9313 29 1 1.8934 -0.5138 -0.8901 30 1 1.8935 -0.5139 0.8899 31 1 3.6501 0.5127 -2.4860 32 1 2.2998 -0.6570 -2.6089 33 1 3.6905 0.7119 -4.7859 34 1 2.3391 -0.4581 -4.9111 35 1 2.0801 2.2300 -5.5615 36 1 0.7180 1.2347 -4.9650 37 1 0.2430 2.0918 1.7475 38 1 1.3074 2.7554 3.0305 39 1 0.6482 -0.1127 2.3839 40 1 1.0883 0.6170 3.9517 41 1 3.3806 -3.5744 3.2464 42 1 3.9643 1.8519 2.7553 43 1 4.1811 0.8018 1.3215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033736098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:36 Heat of formation + Delta-G solvation = -34.511089 kcal Electronic energy + Delta-G solvation = -24215.762559 eV Core-core repulsion = 20876.598836 eV Total energy + Delta-G solvation = -3339.163723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59497 -39.01462 -37.43498 -34.90409 -32.69911 -32.12796 -30.76501 -29.94239 -29.26222 -27.58971 -24.33926 -23.97973 -22.66746 -21.58856 -20.97921 -20.50212 -18.80455 -17.61706 -17.42255 -16.50209 -16.33145 -15.39874 -15.20711 -14.95311 -14.59710 -14.37463 -13.89729 -13.55728 -13.20433 -13.17479 -12.95511 -12.75265 -12.33046 -12.04941 -11.89650 -11.74095 -11.53673 -11.42424 -11.33832 -11.10833 -10.94163 -10.89581 -10.77388 -10.42891 -10.24885 -10.01892 -9.64782 -9.37243 -9.23405 -8.58573 -8.28034 -7.13909 -6.40482 -3.24365 2.69403 2.97075 3.37071 3.48473 3.64510 3.94330 4.32428 4.50986 4.53156 4.66348 4.83585 4.92372 4.95462 5.08505 5.13556 5.24468 5.29462 5.36779 5.42116 5.47872 5.54757 5.59570 5.60565 5.70570 5.76599 5.83007 5.86124 5.99537 6.02607 6.14714 6.25543 6.39724 6.42812 6.50816 6.55876 6.64553 6.75805 6.98288 7.61820 7.69657 8.27422 8.36985 8.96849 9.51927 10.18949 11.07426 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026363 B = 0.005310 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.843466 B = 5271.823690 C = 5612.490146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.071 3.929 3 N -0.583 5.583 4 C 0.519 3.481 5 O -0.533 6.533 6 C 0.058 3.942 7 H 0.095 0.905 8 C -0.145 4.145 9 C -0.153 4.153 10 C 0.042 3.958 11 O -0.348 6.348 12 C 0.126 3.874 13 H 0.105 0.895 14 C -0.141 4.141 15 C 0.108 3.892 16 N -0.605 5.605 17 C -0.336 4.336 18 H 0.078 0.922 19 C -0.015 4.015 20 N -0.913 5.913 21 Si 1.064 2.936 22 H -0.293 1.293 23 H -0.300 1.300 24 H -0.293 1.293 25 C 0.124 3.876 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.138 0.862 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.028 0.972 41 H 0.263 0.737 42 H 0.034 0.966 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.400 6.485 -13.561 15.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.051 4.051 3 N -0.316 5.316 4 C 0.306 3.694 5 O -0.410 6.410 6 C -0.003 4.003 7 H 0.113 0.887 8 C -0.183 4.183 9 C -0.190 4.190 10 C -0.035 4.035 11 O -0.266 6.266 12 C 0.022 3.978 13 H 0.123 0.877 14 C -0.180 4.180 15 C -0.017 4.017 16 N -0.333 5.333 17 C -0.462 4.462 18 H 0.096 0.904 19 C -0.216 4.216 20 N -0.553 5.553 21 Si 0.898 3.102 22 H -0.221 1.221 23 H -0.228 1.228 24 H -0.221 1.221 25 C -0.003 4.003 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.155 0.845 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.261 6.780 -12.440 15.113 hybrid contribution 1.152 0.159 -0.958 1.507 sum -4.109 6.939 -13.398 15.638 Atomic orbital electron populations 1.22396 0.96556 1.02671 1.01606 1.22307 0.94062 0.82098 1.06666 1.47721 1.64221 1.14411 1.05274 1.20168 0.78914 0.85736 0.84608 1.90673 1.44106 1.19775 1.86417 1.22975 1.00068 0.89324 0.87950 0.88745 1.22958 1.00579 0.98940 0.95841 1.22942 1.01125 0.99409 0.95560 1.23465 0.98646 0.92926 0.88488 1.89247 1.95256 1.28233 1.13820 1.22258 0.95790 0.97378 0.82406 0.87691 1.22999 0.98459 0.98344 0.98214 1.21824 0.88502 0.93404 0.97957 1.45004 1.04124 1.14930 1.69243 1.19995 1.03094 0.91499 1.31654 0.90445 1.25704 1.02387 0.94061 0.99473 1.70930 1.30102 1.10748 1.43546 0.83800 0.75564 0.73803 0.77081 1.22135 1.22810 1.22101 1.21988 0.93446 0.90448 0.94400 0.91297 0.91523 0.93539 0.91348 0.84472 0.90056 0.89148 0.90373 0.90110 0.88779 0.92078 0.90774 0.90403 0.93422 0.95431 0.92613 0.94805 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.13 37.16 0.34 -2.04 16 2 C 0.07 1.11 4.85 -4.04 -0.02 1.10 16 3 N -0.58 -9.61 2.53 -163.53 -0.41 -10.02 16 4 C 0.52 8.81 6.88 -10.99 -0.08 8.73 16 5 O -0.53 -10.91 15.97 -13.45 -0.21 -11.12 16 6 C 0.06 0.79 2.85 -27.11 -0.08 0.71 16 7 H 0.10 1.14 5.84 -51.93 -0.30 0.83 16 8 C -0.15 -1.66 5.58 -25.17 -0.14 -1.80 16 9 C -0.15 -1.38 7.09 -25.17 -0.18 -1.56 16 10 C 0.04 0.41 7.63 37.93 0.29 0.70 16 11 O -0.35 -5.13 10.93 -54.23 -0.59 -5.72 16 12 C 0.13 2.18 3.66 -65.66 -0.24 1.94 16 13 H 0.11 1.82 7.02 -51.93 -0.36 1.46 16 14 C -0.14 -2.35 5.99 -24.90 -0.15 -2.50 16 15 C 0.11 2.20 3.76 -3.07 -0.01 2.19 16 16 N -0.60 -13.77 1.83 -169.94 -0.31 -14.08 16 17 C -0.34 -8.98 10.08 -15.06 -0.15 -9.13 16 18 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 19 C -0.01 -0.41 5.42 -17.43 -0.09 -0.50 16 20 N -0.91 -27.09 13.70 55.49 0.76 -26.33 16 21 Si 1.06 25.80 24.70 -169.99 -4.20 21.60 16 22 H -0.29 -6.66 6.85 56.52 0.39 -6.28 16 23 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.29 -6.90 6.65 56.52 0.38 -6.52 16 25 C 0.12 2.45 6.60 -2.41 -0.02 2.43 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.96 4.87 -51.93 -0.25 0.70 16 28 H 0.05 0.54 6.16 -51.93 -0.32 0.22 16 29 H 0.07 0.94 4.80 -51.92 -0.25 0.70 16 30 H 0.14 2.70 4.28 -51.93 -0.22 2.48 16 31 H 0.08 1.04 7.87 -51.93 -0.41 0.64 16 32 H 0.09 0.90 6.65 -51.93 -0.35 0.56 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.12 6.50 -51.93 -0.34 0.78 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.99 5.07 -51.92 -0.26 0.73 16 40 H 0.03 0.61 3.84 -51.93 -0.20 0.41 16 41 H 0.26 7.74 8.73 -40.82 -0.36 7.38 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -31.89 314.60 -7.02 -38.91 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.26 Total: 1.74 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -0.53 Total: 0.27 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.04 Total: -50.43 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.81 Total: -16.84 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -4.20 Total: 21.60 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.89 -7.02 -38.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033736098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.398 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds