Wall clock time and date at job start Tue Mar 31 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46492 * 109.47362 * 2 1 4 4 C 1.34782 * 119.99810 * 82.47423 * 3 2 1 5 5 O 1.21279 * 119.99954 * 185.27655 * 4 3 2 6 6 C 1.50701 * 119.99939 * 5.27851 * 4 3 2 7 7 H 1.08992 * 110.27283 * 312.06569 * 6 4 3 8 8 C 1.54947 * 110.30761 * 74.15725 * 6 4 3 9 9 C 1.55407 * 100.89401 * 155.28535 * 8 6 4 10 10 C 1.54379 * 102.30950 * 325.98771 * 9 8 6 11 11 O 1.43236 * 107.59028 * 21.28694 * 10 9 8 12 12 C 1.46499 * 120.00524 * 262.47931 * 3 2 1 13 13 H 1.08999 * 110.89100 * 185.89673 * 12 3 2 14 14 C 1.55150 * 111.00397 * 62.00821 * 12 3 2 15 15 C 1.54324 * 102.94486 * 206.38832 * 14 12 3 16 16 N 1.47026 * 107.26992 * 22.20005 * 15 14 12 17 17 C 1.36933 * 125.64950 * 181.02247 * 16 15 14 18 18 H 1.08001 * 120.00186 * 174.86193 * 17 16 15 19 19 C 1.38811 * 119.99959 * 354.86946 * 17 16 15 20 20 N 1.31625 * 120.00143 * 158.31935 * 19 17 16 21 21 Si 1.86802 * 120.00056 * 338.31326 * 19 17 16 22 22 H 1.48490 * 109.47359 * 185.64986 * 21 19 17 23 23 H 1.48504 * 109.47320 * 305.65307 * 21 19 17 24 24 H 1.48499 * 109.46950 * 65.64951 * 21 19 17 25 25 C 1.47422 * 108.70043 * 1.28065 * 16 15 14 26 26 H 1.08999 * 109.47238 * 67.63756 * 1 2 3 27 27 H 1.09001 * 109.46864 * 187.63423 * 1 2 3 28 28 H 1.08996 * 109.47081 * 307.63282 * 1 2 3 29 29 H 1.09004 * 109.47012 * 239.99817 * 2 1 3 30 30 H 1.09002 * 109.47230 * 120.00154 * 2 1 3 31 31 H 1.09000 * 111.12490 * 273.27783 * 8 6 4 32 32 H 1.08998 * 111.12632 * 37.43685 * 8 6 4 33 33 H 1.08999 * 110.88371 * 207.74985 * 9 8 6 34 34 H 1.09008 * 110.93404 * 84.24915 * 9 8 6 35 35 H 1.08999 * 109.83455 * 261.77079 * 10 9 8 36 36 H 1.09003 * 109.82877 * 140.79746 * 10 9 8 37 37 H 1.09004 * 110.71558 * 88.02874 * 14 12 3 38 38 H 1.08998 * 110.87900 * 324.82821 * 14 12 3 39 39 H 1.08996 * 109.88800 * 262.77711 * 15 14 12 40 40 H 1.09002 * 110.01182 * 141.68136 * 15 14 12 41 41 H 0.96998 * 119.99487 * 354.97028 * 20 19 17 42 42 H 1.09005 * 110.36357 * 94.48708 * 25 16 15 43 43 H 1.08994 * 110.36966 * 216.80684 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.0988 2.0674 1.1572 5 8 2.4113 3.2392 1.1468 6 6 1.8006 1.3787 2.4640 7 1 0.8695 0.8169 2.3910 8 6 2.9677 0.4371 2.8542 9 6 2.7902 0.3730 4.3968 10 6 2.2755 1.7903 4.7280 11 8 1.7205 2.3408 3.5277 12 6 2.4191 2.0165 -1.2577 13 1 2.8532 2.9996 -1.0755 14 6 1.2215 2.1105 -2.2396 15 6 1.9080 2.1275 -3.6216 16 7 3.2389 1.5253 -3.4553 17 6 4.1742 1.3708 -4.4435 18 1 5.1562 0.9910 -4.2030 19 6 3.8601 1.7025 -5.7543 20 7 4.8206 1.9686 -6.6140 21 14 2.0744 1.7710 -6.2982 22 1 2.0117 2.0109 -7.7623 23 1 1.4098 0.4819 -5.9789 24 1 1.3820 2.8747 -5.5857 25 6 3.3974 1.1096 -2.0498 26 1 -0.3633 0.3910 -0.9504 27 1 -0.3633 -1.0186 0.1365 28 1 -0.3633 0.6275 0.8138 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.8463 -0.5473 2.4021 32 1 3.9304 0.8735 2.5881 33 1 3.7432 0.1814 4.8899 34 1 2.0537 -0.3816 4.6731 35 1 3.1014 2.4125 5.0728 36 1 1.5068 1.7338 5.4988 37 1 0.6604 3.0307 -2.0764 38 1 0.5708 1.2415 -2.1429 39 1 2.0071 3.1542 -3.9738 40 1 1.3245 1.5457 -4.3352 41 1 5.7427 2.0046 -6.3151 42 1 3.1259 0.0606 -1.9315 43 1 4.4220 1.2769 -1.7179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033736100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:39 Heat of formation + Delta-G solvation = -34.403800 kcal Electronic energy + Delta-G solvation = -23558.883748 eV Core-core repulsion = 20219.724678 eV Total energy + Delta-G solvation = -3339.159070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68981 -39.00637 -37.44183 -35.57245 -32.68397 -32.31491 -30.75328 -30.21367 -29.29493 -27.85011 -24.37957 -24.08673 -22.85191 -22.03398 -21.03402 -20.35260 -18.96644 -17.96163 -17.52429 -16.74153 -16.38503 -15.65057 -15.17275 -15.08298 -14.84692 -14.07585 -13.98750 -13.66192 -13.48596 -13.44945 -13.03030 -12.89685 -12.46115 -12.29573 -12.23267 -12.00248 -11.97133 -11.71603 -11.52102 -11.29232 -11.05992 -10.95900 -10.91324 -10.49670 -10.13108 -9.95495 -9.47603 -9.41314 -9.03748 -8.67580 -8.45674 -7.08464 -6.33400 -3.20449 2.53034 2.75611 3.43715 3.50446 3.66630 3.72758 4.03635 4.30713 4.45288 4.63778 4.72737 4.76221 4.76543 4.90922 4.97413 5.05311 5.16579 5.21697 5.30365 5.31833 5.35896 5.42992 5.43629 5.47934 5.49960 5.63017 5.65561 5.72417 5.82914 5.95227 6.05333 6.23874 6.34620 6.43056 6.54243 6.58853 6.77294 6.81281 7.44024 7.63286 8.20900 8.32187 9.02487 9.55280 10.20446 11.16827 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033150 B = 0.004219 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.442131 B = 6634.456690 C = 6827.888043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.090 3.910 3 N -0.596 5.596 4 C 0.514 3.486 5 O -0.521 6.521 6 C 0.065 3.935 7 H 0.096 0.904 8 C -0.146 4.146 9 C -0.153 4.153 10 C 0.048 3.952 11 O -0.356 6.356 12 C 0.126 3.874 13 H 0.110 0.890 14 C -0.142 4.142 15 C 0.117 3.883 16 N -0.609 5.609 17 C -0.327 4.327 18 H 0.080 0.920 19 C -0.018 4.018 20 N -0.921 5.921 21 Si 1.058 2.942 22 H -0.301 1.301 23 H -0.298 1.298 24 H -0.282 1.282 25 C 0.131 3.869 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.029 0.971 41 H 0.263 0.737 42 H 0.028 0.972 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 -7.035 21.761 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.032 4.032 3 N -0.330 5.330 4 C 0.301 3.699 5 O -0.396 6.396 6 C 0.004 3.996 7 H 0.113 0.887 8 C -0.184 4.184 9 C -0.191 4.191 10 C -0.028 4.028 11 O -0.274 6.274 12 C 0.023 3.977 13 H 0.127 0.873 14 C -0.181 4.181 15 C -0.008 4.008 16 N -0.337 5.337 17 C -0.454 4.454 18 H 0.097 0.903 19 C -0.218 4.218 20 N -0.562 5.562 21 Si 0.891 3.109 22 H -0.229 1.229 23 H -0.227 1.227 24 H -0.209 1.209 25 C 0.004 3.996 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.539 -5.954 20.362 23.260 hybrid contribution 0.982 -0.672 1.362 1.808 sum -8.557 -6.626 21.724 24.270 Atomic orbital electron populations 1.22396 0.95765 1.02248 1.03104 1.21789 0.94584 0.82851 1.04026 1.47829 1.64556 1.13987 1.06615 1.20387 0.77689 0.87028 0.84824 1.90715 1.46416 1.15673 1.86752 1.22915 0.99643 0.89724 0.87343 0.88692 1.23303 0.98940 1.00235 0.95891 1.23144 1.02806 0.97608 0.95541 1.23203 0.98229 0.93677 0.87730 1.88531 1.82032 1.38706 1.18135 1.22443 0.95633 0.98315 0.81356 0.87250 1.23050 0.97457 1.02117 0.95437 1.21953 0.86931 0.97596 0.94364 1.44745 1.13818 1.70216 1.04878 1.20122 0.93100 1.44275 0.87912 0.90269 1.25752 1.06156 0.98103 0.91766 1.70905 1.01108 1.47132 1.37047 0.84058 0.75866 0.76366 0.74584 1.22864 1.22672 1.20907 1.21839 0.96956 0.95213 0.85596 0.91358 0.91370 0.92505 0.88645 0.90625 0.88738 0.89522 0.89526 0.90117 0.91002 0.91025 0.91046 0.90810 0.93333 0.95377 0.92757 0.95461 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.75 37.16 0.36 -1.24 16 2 C 0.09 0.94 5.11 -4.05 -0.02 0.92 16 3 N -0.60 -8.41 2.53 -163.55 -0.41 -8.82 16 4 C 0.51 7.86 6.89 -10.98 -0.08 7.79 16 5 O -0.52 -10.38 15.99 -13.57 -0.22 -10.60 16 6 C 0.06 0.74 2.92 -26.85 -0.08 0.66 16 7 H 0.10 0.88 6.16 -51.93 -0.32 0.56 16 8 C -0.15 -1.24 6.08 -24.43 -0.15 -1.39 16 9 C -0.15 -1.01 7.02 -24.73 -0.17 -1.18 16 10 C 0.05 0.43 7.80 37.88 0.30 0.72 16 11 O -0.36 -4.75 10.63 -54.36 -0.58 -5.32 16 12 C 0.13 2.21 3.45 -65.66 -0.23 1.99 16 13 H 0.11 2.18 7.06 -51.93 -0.37 1.81 16 14 C -0.14 -2.45 6.50 -24.90 -0.16 -2.61 16 15 C 0.12 2.56 4.58 -3.06 -0.01 2.55 16 16 N -0.61 -14.94 3.34 -169.93 -0.57 -15.51 16 17 C -0.33 -9.41 10.51 -15.06 -0.16 -9.57 16 18 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 19 C -0.02 -0.53 5.48 -17.43 -0.10 -0.62 16 20 N -0.92 -29.09 13.70 55.49 0.76 -28.33 16 21 Si 1.06 26.63 24.62 -169.99 -4.19 22.45 16 22 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 23 H -0.30 -7.20 7.02 56.52 0.40 -6.81 16 24 H -0.28 -6.51 5.23 56.52 0.30 -6.21 16 25 C 0.13 2.60 6.75 -2.41 -0.02 2.58 16 26 H 0.07 0.71 5.90 -51.93 -0.31 0.40 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.51 6.84 -51.93 -0.35 0.16 16 29 H 0.10 1.08 5.85 -51.93 -0.30 0.77 16 30 H 0.08 0.59 4.95 -51.93 -0.26 0.33 16 31 H 0.09 0.60 6.43 -51.93 -0.33 0.27 16 32 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.12 5.16 -51.93 -0.27 0.85 16 39 H 0.05 1.14 6.70 -51.93 -0.35 0.79 16 40 H 0.03 0.64 4.22 -51.93 -0.22 0.43 16 41 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 42 H 0.03 0.51 5.87 -51.93 -0.30 0.20 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -35.30 319.99 -7.34 -42.63 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.45 Total: -1.91 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.51 Total: 0.60 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.22 Total: -52.66 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.79 Total: -15.92 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -4.19 Total: 22.45 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.30 -7.34 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033736100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.229 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds