Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.47073 * 2 1 4 4 C 1.34773 * 119.99964 * 82.87109 * 3 2 1 5 5 O 1.21288 * 119.99968 * 180.02562 * 4 3 2 6 6 C 1.50694 * 120.00205 * 0.02562 * 4 3 2 7 7 H 1.09005 * 110.43652 * 300.69834 * 6 4 3 8 8 C 1.54814 * 110.49268 * 178.15511 * 6 4 3 9 9 C 1.55225 * 101.98999 * 220.51870 * 8 6 4 10 10 O 1.44378 * 103.56394 * 36.87887 * 9 8 6 11 11 C 1.43745 * 106.97864 * 320.01086 * 10 9 8 12 12 C 1.46495 * 119.99875 * 262.87105 * 3 2 1 13 13 H 1.09003 * 110.64234 * 181.27311 * 12 3 2 14 14 C 1.55150 * 110.72343 * 304.41859 * 12 3 2 15 15 C 1.55129 * 101.48624 * 153.73131 * 14 12 3 16 16 N 1.47421 * 104.94168 * 323.22585 * 15 14 12 17 17 C 1.36939 * 125.64181 * 203.96491 * 16 15 14 18 18 H 1.08006 * 119.99731 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.00554 * 0.04243 * 17 16 15 20 20 N 1.31623 * 119.99719 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00438 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47169 * 59.99760 * 21 19 17 23 23 H 1.48491 * 109.47371 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46793 * 300.00294 * 21 19 17 25 25 C 1.47017 * 108.70799 * 24.00459 * 16 15 14 26 26 H 1.08995 * 109.46669 * 187.75484 * 1 2 3 27 27 H 1.09000 * 109.47143 * 67.75319 * 1 2 3 28 28 H 1.09007 * 109.46998 * 307.75576 * 1 2 3 29 29 H 1.08999 * 109.47056 * 119.99736 * 2 1 3 30 30 H 1.09002 * 109.47320 * 240.00028 * 2 1 3 31 31 H 1.09001 * 110.90250 * 338.64320 * 8 6 4 32 32 H 1.09000 * 110.90833 * 102.24173 * 8 6 4 33 33 H 1.08995 * 110.51780 * 278.38200 * 9 8 6 34 34 H 1.08994 * 110.64184 * 155.43099 * 9 8 6 35 35 H 1.08991 * 109.87709 * 267.09118 * 11 10 9 36 36 H 1.08999 * 109.87762 * 145.93936 * 11 10 9 37 37 H 1.08996 * 111.00485 * 271.94049 * 14 12 3 38 38 H 1.09005 * 111.00262 * 35.79165 * 14 12 3 39 39 H 1.09001 * 110.41864 * 204.29054 * 15 14 12 40 40 H 1.09005 * 110.19926 * 82.04527 * 15 14 12 41 41 H 0.97005 * 119.99692 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.87993 * 239.52530 * 25 16 15 43 43 H 1.08995 * 109.88597 * 118.35514 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1064 2.0649 1.1581 5 8 2.5103 3.2085 1.1581 6 6 1.7031 1.4083 2.4532 7 1 0.6595 1.0961 2.4128 8 6 1.9351 2.3703 3.6438 9 6 2.5042 1.4134 4.7254 10 8 3.3249 0.4974 3.9691 11 6 2.6154 0.2033 2.7541 12 6 2.4110 2.0193 -1.2589 13 1 2.7699 3.0330 -1.0804 14 6 3.4892 1.1759 -1.9890 15 6 3.2525 1.5843 -3.4668 16 7 1.7916 1.7398 -3.5888 17 6 1.0724 1.6368 -4.7496 18 1 0.0005 1.7685 -4.7341 19 6 1.7207 1.3627 -5.9459 20 7 3.0270 1.2024 -5.9648 21 14 0.7397 1.2229 -7.5294 22 1 0.0337 2.5032 -7.7890 23 1 1.6593 0.9266 -8.6569 24 1 -0.2542 0.1270 -7.4007 25 6 1.2350 2.0248 -2.2583 26 1 -0.3632 -1.0182 0.1387 27 1 -0.3633 0.3891 -0.9512 28 1 -0.3633 0.6293 0.8126 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.6615 3.1409 3.3854 32 1 0.9964 2.8169 3.9717 33 1 1.6966 0.8805 5.2272 34 1 3.1082 1.9642 5.4463 35 1 2.0120 -0.6948 2.8854 36 1 3.3227 0.0608 1.9371 37 1 4.4907 1.4525 -1.6599 38 1 3.3135 0.1095 -1.8468 39 1 3.6084 0.8034 -4.1388 40 1 3.7538 2.5281 -3.6813 41 1 3.4802 1.0113 -6.8009 42 1 0.5133 1.2547 -1.9857 43 1 0.7539 3.0029 -2.2594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033766044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = -63.111337 kcal Electronic energy + Delta-G solvation = -23571.486327 eV Core-core repulsion = 20231.082404 eV Total energy + Delta-G solvation = -3340.403923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82599 -39.90425 -38.74811 -36.76242 -34.39643 -33.15070 -31.79415 -30.78014 -30.36573 -28.81781 -26.51482 -25.13115 -23.83691 -23.28919 -22.08767 -21.40647 -20.07597 -18.90996 -18.43334 -17.72944 -17.50375 -16.86373 -16.55833 -15.97865 -15.83750 -15.74514 -15.21964 -14.82352 -14.62857 -14.29722 -13.91392 -13.85975 -13.60225 -13.50986 -13.10528 -12.99218 -12.91047 -12.66813 -12.44039 -12.37557 -12.34910 -12.11781 -12.07442 -11.89865 -11.77675 -11.67643 -11.36207 -11.02849 -10.74443 -10.52861 -9.72180 -8.91373 -7.78591 -5.24362 1.46859 1.49811 1.50493 1.56801 1.85124 2.49782 2.93854 3.26972 3.31675 3.50825 3.70322 3.82847 3.88728 3.95940 4.00903 4.14053 4.18004 4.23806 4.34004 4.40100 4.47881 4.57378 4.60021 4.66732 4.71139 4.77887 4.84899 4.89320 4.92060 4.97222 5.02331 5.13509 5.18249 5.42649 5.44994 5.54348 5.58637 5.75612 5.87166 6.26975 6.39697 7.07350 7.08580 7.74110 8.38152 9.23044 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038021 B = 0.003915 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.257573 B = 7150.384273 C = 7285.526583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.088 3.912 3 N -0.592 5.592 4 C 0.517 3.483 5 O -0.585 6.585 6 C -0.139 4.139 7 H 0.141 0.859 8 C -0.143 4.143 9 C 0.048 3.952 10 O -0.400 6.400 11 C 0.056 3.944 12 C 0.140 3.860 13 H 0.079 0.921 14 C -0.134 4.134 15 C 0.157 3.843 16 N -0.621 5.621 17 C -0.242 4.242 18 H 0.081 0.919 19 C -0.063 4.063 20 N -0.948 5.948 21 Si 0.982 3.018 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.273 1.273 25 C 0.124 3.876 26 H 0.094 0.906 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.083 0.917 40 H -0.018 1.018 41 H 0.248 0.752 42 H 0.058 0.942 43 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 -5.769 20.703 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.033 4.033 3 N -0.323 5.323 4 C 0.306 3.694 5 O -0.465 6.465 6 C -0.160 4.160 7 H 0.159 0.841 8 C -0.181 4.181 9 C -0.028 4.028 10 O -0.320 6.320 11 C -0.020 4.020 12 C 0.035 3.965 13 H 0.097 0.903 14 C -0.173 4.173 15 C 0.032 3.968 16 N -0.347 5.347 17 C -0.371 4.371 18 H 0.099 0.901 19 C -0.256 4.256 20 N -0.598 5.598 21 Si 0.810 3.190 22 H -0.208 1.208 23 H -0.219 1.219 24 H -0.198 1.198 25 C -0.002 4.002 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.000 1.000 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -4.390 -5.309 20.549 21.673 hybrid contribution -0.359 0.654 -1.580 1.747 sum -4.749 -4.655 18.970 20.101 Atomic orbital electron populations 1.22381 0.94556 1.03995 1.02123 1.22030 0.95688 0.80828 1.04778 1.47996 1.63846 1.15032 1.05454 1.21048 0.76582 0.85748 0.85978 1.90660 1.48506 1.20087 1.87252 1.22869 1.03943 0.97547 0.91601 0.84135 1.23180 1.03501 0.98126 0.93319 1.23806 0.95246 0.89777 0.93962 1.88881 1.45029 1.65975 1.32108 1.23358 0.94898 0.96230 0.87546 1.21774 0.94702 0.97056 0.82957 0.90325 1.23233 0.97951 1.00215 0.95902 1.21740 0.83834 0.98167 0.93087 1.44674 1.03690 1.83397 1.02947 1.19396 0.91394 1.40965 0.85302 0.90123 1.25632 0.96874 1.02218 1.00851 1.70022 1.08069 1.56073 1.25596 0.85100 0.77277 0.78090 0.78528 1.20806 1.21900 1.19831 1.21831 0.95343 0.97751 0.85288 0.88699 0.93680 0.91461 0.87198 0.90154 0.91616 0.87745 0.89193 0.87949 0.87663 0.90436 0.90721 0.89885 0.89944 1.00011 0.94194 0.92428 0.97504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 9.81 71.98 0.71 -2.47 16 2 C 0.09 1.85 4.96 86.38 0.43 2.28 16 3 N -0.59 -17.00 2.48 -791.24 -1.96 -18.96 16 4 C 0.52 14.94 6.77 87.66 0.59 15.53 16 5 O -0.58 -22.26 14.82 -3.06 -0.05 -22.31 16 6 C -0.14 -2.58 2.62 -10.55 -0.03 -2.60 16 7 H 0.14 1.78 6.46 -2.38 -0.02 1.76 16 8 C -0.14 -2.59 6.53 31.98 0.21 -2.38 16 9 C 0.05 0.70 7.72 72.75 0.56 1.26 16 10 O -0.40 -8.31 11.52 -148.98 -1.72 -10.02 16 11 C 0.06 0.95 5.46 72.36 0.39 1.35 16 12 C 0.14 5.24 3.34 46.18 0.15 5.40 16 13 H 0.08 3.33 6.99 -2.39 -0.02 3.32 16 14 C -0.13 -5.12 6.61 32.06 0.21 -4.91 16 15 C 0.16 7.90 5.89 86.93 0.51 8.41 16 16 N -0.62 -32.33 3.40 -691.55 -2.35 -34.68 16 17 C -0.24 -13.57 10.27 84.03 0.86 -12.70 16 18 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 19 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 20 N -0.95 -56.26 10.09 21.65 0.22 -56.04 16 21 Si 0.98 45.28 29.55 68.60 2.03 47.31 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C 0.12 5.29 6.88 86.73 0.60 5.88 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.04 1.11 5.63 -2.39 -0.01 1.10 16 28 H 0.07 1.06 6.47 -2.38 -0.02 1.04 16 29 H 0.11 1.58 4.40 -2.39 -0.01 1.57 16 30 H 0.08 1.95 6.20 -2.39 -0.01 1.93 16 31 H 0.07 1.64 6.90 -2.39 -0.02 1.62 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 1.06 7.81 -2.39 -0.02 1.04 16 36 H 0.08 1.51 6.81 -2.39 -0.02 1.49 16 37 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.08 2.89 6.20 -2.38 -0.01 2.87 16 39 H 0.08 4.62 5.87 -2.39 -0.01 4.60 16 40 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 41 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 42 H 0.06 2.26 4.48 -2.39 -0.01 2.25 16 43 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -72.61 322.88 2.85 -69.75 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.01 Total: 13.00 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 5.67 Total: 11.95 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -4.09 Total: -109.68 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.76 Total: -32.33 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -72.61 2.85 -69.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033766044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.643 kcal (2) G-P(sol) polarization free energy of solvation -72.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds