Wall clock time and date at job start Tue Mar 31 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.47363 * 2 1 4 4 C 1.34769 * 119.99926 * 270.42042 * 3 2 1 5 5 O 1.21276 * 120.00172 * 186.14009 * 4 3 2 6 6 C 1.50704 * 120.00267 * 6.14412 * 4 3 2 7 7 H 1.09002 * 110.74914 * 27.48287 * 6 4 3 8 8 C 1.55303 * 110.84994 * 150.95675 * 6 4 3 9 9 C 1.55211 * 100.82568 * 152.18009 * 8 6 4 10 10 O 1.43640 * 105.25800 * 323.81566 * 9 8 6 11 11 C 1.43237 * 109.97699 * 24.28636 * 10 9 8 12 12 C 1.46494 * 119.99815 * 90.42070 * 3 2 1 13 13 H 1.09003 * 110.91680 * 182.63342 * 12 3 2 14 14 C 1.55159 * 111.00529 * 58.72860 * 12 3 2 15 15 C 1.54323 * 102.94348 * 277.42564 * 14 12 3 16 16 N 1.47293 * 107.30503 * 337.81922 * 15 14 12 17 17 C 1.36935 * 125.79186 * 178.92713 * 16 15 14 18 18 H 1.08004 * 119.99861 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00044 * 359.97438 * 17 16 15 20 20 N 1.31620 * 120.00050 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00034 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47283 * 59.99987 * 21 19 17 23 23 H 1.48493 * 109.47211 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47042 * 300.00324 * 21 19 17 25 25 C 1.47425 * 108.55844 * 358.92123 * 16 15 14 26 26 H 1.09001 * 109.46898 * 300.00537 * 1 2 3 27 27 H 1.09000 * 109.46706 * 59.99990 * 1 2 3 28 28 H 1.08998 * 109.47322 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46928 * 239.99991 * 2 1 3 30 30 H 1.09004 * 109.47169 * 120.00068 * 2 1 3 31 31 H 1.08997 * 111.12721 * 270.23791 * 8 6 4 32 32 H 1.08994 * 111.12909 * 34.40593 * 8 6 4 33 33 H 1.08998 * 110.36737 * 204.80222 * 9 8 6 34 34 H 1.08997 * 110.21002 * 82.75037 * 9 8 6 35 35 H 1.08996 * 109.83523 * 238.77761 * 11 10 9 36 36 H 1.08997 * 109.90623 * 117.83774 * 11 10 9 37 37 H 1.08998 * 110.71756 * 35.79010 * 14 12 3 38 38 H 1.09004 * 110.71565 * 159.06323 * 14 12 3 39 39 H 1.09004 * 109.87879 * 97.22315 * 15 14 12 40 40 H 1.08996 * 109.88124 * 218.23642 * 15 14 12 41 41 H 0.96991 * 119.99788 * 180.02562 * 20 19 17 42 42 H 1.08998 * 110.36896 * 265.26465 * 25 16 15 43 43 H 1.09000 * 110.36094 * 143.04995 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2350 2.0194 -1.1671 5 8 2.7434 3.1204 -1.1710 6 6 1.8453 1.3649 -2.4675 7 1 1.0164 0.6729 -2.3183 8 6 1.4888 2.4318 -3.5382 9 6 1.8459 1.6677 -4.8412 10 8 3.0066 0.8867 -4.5154 11 6 3.0538 0.6455 -3.1043 12 6 2.2714 2.0687 1.2687 13 1 2.5846 3.0986 1.0975 14 6 3.3201 1.3021 2.1171 15 6 2.4748 0.2125 2.8097 16 7 1.0781 0.6803 2.8173 17 6 0.0065 -0.0057 3.3233 18 1 -0.9816 0.4281 3.2800 19 6 0.1902 -1.2587 3.8919 20 7 1.3945 -1.7871 3.9451 21 14 -1.2718 -2.1949 4.5814 22 1 -2.2617 -2.4331 3.5004 23 1 -0.8126 -3.4968 5.1284 24 1 -1.9034 -1.3987 5.6642 25 6 1.0262 2.0127 2.1885 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.4288 2.6833 -3.5046 32 1 2.1059 3.3231 -3.4254 33 1 2.0755 2.3704 -5.6422 34 1 1.0220 1.0170 -5.1340 35 1 3.9806 1.0439 -2.6918 36 1 2.9920 -0.4250 -2.9085 37 1 4.0796 0.8526 1.4774 38 1 3.7769 1.9625 2.8543 39 1 2.5489 -0.7228 2.2546 40 1 2.8244 0.0657 3.8315 41 1 1.5227 -2.6628 4.3420 42 1 1.0800 2.7929 2.9477 43 1 0.1148 2.1191 1.6001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033766047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:44 Heat of formation + Delta-G solvation = -39.826967 kcal Electronic energy + Delta-G solvation = -24133.261717 eV Core-core repulsion = 20793.867480 eV Total energy + Delta-G solvation = -3339.394237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.52528 -38.90176 -37.36914 -34.61465 -32.75575 -31.92562 -30.28109 -29.52202 -28.90685 -27.39176 -24.59981 -23.74438 -22.52361 -22.25367 -20.24727 -20.13843 -18.55529 -17.55465 -17.03467 -16.42227 -16.27895 -15.39865 -14.76189 -14.67654 -14.53493 -13.90145 -13.86715 -13.47628 -13.30143 -12.96719 -12.65924 -12.22949 -12.06555 -11.97661 -11.86569 -11.61946 -11.33865 -11.20900 -11.01142 -10.98242 -10.88325 -10.79520 -10.46494 -10.21818 -10.13940 -9.91717 -9.70478 -9.63873 -9.32200 -8.69922 -8.21875 -6.89378 -5.79400 -3.12436 2.72678 3.25423 3.34659 3.40308 3.41073 3.74679 4.33358 4.43120 4.62570 4.80609 5.01397 5.04675 5.11555 5.33541 5.39705 5.41558 5.49078 5.56994 5.59200 5.64125 5.68415 5.76212 5.83624 5.91191 5.96821 6.03076 6.16641 6.28487 6.35301 6.42829 6.48782 6.59045 6.66931 6.79978 7.02804 7.09404 7.46932 7.49253 7.72456 7.82711 8.15366 8.41194 9.13102 9.73348 10.39615 11.32266 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.004998 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.136046 B = 5600.399088 C = 6029.701377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.091 3.909 3 N -0.582 5.582 4 C 0.523 3.477 5 O -0.551 6.551 6 C -0.149 4.149 7 H 0.108 0.892 8 C -0.139 4.139 9 C 0.052 3.948 10 O -0.382 6.382 11 C 0.070 3.930 12 C 0.122 3.878 13 H 0.098 0.902 14 C -0.156 4.156 15 C 0.173 3.827 16 N -0.600 5.600 17 C -0.224 4.224 18 H 0.076 0.924 19 C -0.004 4.004 20 N -0.922 5.922 21 Si 0.908 3.092 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.124 3.876 26 H 0.089 0.911 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.253 0.747 42 H 0.029 0.971 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 4.346 -12.378 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.030 4.030 3 N -0.313 5.313 4 C 0.310 3.690 5 O -0.430 6.430 6 C -0.171 4.171 7 H 0.126 0.874 8 C -0.177 4.177 9 C -0.024 4.024 10 O -0.301 6.301 11 C -0.007 4.007 12 C 0.018 3.982 13 H 0.116 0.884 14 C -0.196 4.196 15 C 0.049 3.951 16 N -0.328 5.328 17 C -0.352 4.352 18 H 0.094 0.906 19 C -0.200 4.200 20 N -0.569 5.569 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.003 4.003 26 H 0.108 0.892 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.040 4.612 -12.384 13.256 hybrid contribution -1.061 -0.643 0.710 1.429 sum -0.020 3.969 -11.674 12.330 Atomic orbital electron populations 1.22262 0.95522 1.02303 1.02157 1.22028 0.95435 0.81432 1.04140 1.47880 1.63709 1.14666 1.05001 1.20107 0.78345 0.85563 0.84934 1.90641 1.44264 1.20878 1.87212 1.22983 1.00516 0.99275 0.94294 0.87352 1.23272 1.03178 0.98842 0.92423 1.23432 0.88222 0.93518 0.97232 1.88390 1.45423 1.73607 1.22683 1.22980 0.97241 0.99606 0.80887 1.22272 0.96995 0.96341 0.82585 0.88408 1.23264 0.97746 0.99860 0.98691 1.21305 0.82620 0.92687 0.98457 1.44546 1.04035 1.14801 1.69372 1.18897 0.86736 0.97862 1.31694 0.90635 1.24728 0.96608 0.97546 1.01143 1.69925 1.19424 1.17623 1.49933 0.86269 0.81700 0.79254 0.78943 1.21213 1.21664 1.21289 1.21946 0.95312 0.89601 0.93457 0.89197 0.94949 0.92175 0.92630 0.86091 0.89613 0.88678 0.89509 0.92047 0.90794 0.90567 0.91864 0.91312 0.92942 0.93807 0.93659 0.95356 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.60 37.16 0.36 -2.36 16 2 C 0.09 1.50 4.86 -4.04 -0.02 1.48 16 3 N -0.58 -9.69 2.53 -163.67 -0.41 -10.10 16 4 C 0.52 8.45 6.66 -10.99 -0.07 8.38 16 5 O -0.55 -10.40 15.30 5.56 0.09 -10.31 16 6 C -0.15 -1.92 2.38 -89.82 -0.21 -2.14 16 7 H 0.11 1.30 5.50 -51.93 -0.29 1.01 16 8 C -0.14 -1.59 6.54 -24.34 -0.16 -1.74 16 9 C 0.05 0.54 7.78 38.33 0.30 0.84 16 10 O -0.38 -5.01 11.36 -35.23 -0.40 -5.41 16 11 C 0.07 0.88 7.16 37.88 0.27 1.16 16 12 C 0.12 2.18 3.65 -65.78 -0.24 1.94 16 13 H 0.10 1.75 7.04 -51.93 -0.37 1.38 16 14 C -0.16 -2.83 6.43 -24.90 -0.16 -2.99 16 15 C 0.17 3.83 4.28 -2.92 -0.01 3.82 16 16 N -0.60 -13.64 2.09 -169.85 -0.35 -14.00 16 17 C -0.22 -5.62 9.00 -15.06 -0.14 -5.76 16 18 H 0.08 1.87 7.83 -52.48 -0.41 1.46 16 19 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 20 N -0.92 -25.01 10.34 55.49 0.57 -24.44 16 21 Si 0.91 20.89 29.55 -169.99 -5.02 15.86 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.12 2.42 5.94 -2.53 -0.02 2.40 16 26 H 0.09 1.73 3.87 -51.93 -0.20 1.53 16 27 H 0.03 0.46 6.91 -51.93 -0.36 0.10 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.78 6.33 -51.93 -0.33 0.45 16 30 H 0.12 2.38 3.83 -51.93 -0.20 2.18 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.23 7.23 -51.93 -0.38 0.86 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 1.00 7.81 -51.93 -0.41 0.60 16 36 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.25 5.31 -51.93 -0.28 0.98 16 40 H 0.04 1.10 7.52 -51.93 -0.39 0.71 16 41 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.90 6.54 -51.93 -0.34 0.56 16 LS Contribution 321.16 15.07 4.84 4.84 Total: -1.00 -28.38 321.16 -7.33 -35.71 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.44 Total: 3.02 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -0.20 Total: 4.83 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.20 Total: -48.54 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.32 Total: -15.72 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.38 -7.33 -35.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033766047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.113 kcal (2) G-P(sol) polarization free energy of solvation -28.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds