Wall clock time and date at job start Tue Mar 31 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.47363 * 2 1 4 4 C 1.34769 * 119.99926 * 270.42042 * 3 2 1 5 5 O 1.21276 * 120.00172 * 186.14009 * 4 3 2 6 6 C 1.50704 * 120.00267 * 6.14412 * 4 3 2 7 7 H 1.09002 * 110.74914 * 27.48287 * 6 4 3 8 8 C 1.55303 * 110.84994 * 150.95675 * 6 4 3 9 9 C 1.55211 * 100.82568 * 152.18009 * 8 6 4 10 10 O 1.43640 * 105.25800 * 323.81566 * 9 8 6 11 11 C 1.43237 * 109.97699 * 24.28636 * 10 9 8 12 12 C 1.46494 * 119.99815 * 90.42070 * 3 2 1 13 13 H 1.09003 * 110.91680 * 182.63342 * 12 3 2 14 14 C 1.55159 * 111.00529 * 58.72860 * 12 3 2 15 15 C 1.54323 * 102.94348 * 277.42564 * 14 12 3 16 16 N 1.47293 * 107.30503 * 337.81922 * 15 14 12 17 17 C 1.36935 * 125.79186 * 178.92713 * 16 15 14 18 18 H 1.08004 * 119.99861 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00044 * 359.97438 * 17 16 15 20 20 N 1.31620 * 120.00050 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00034 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47283 * 59.99987 * 21 19 17 23 23 H 1.48493 * 109.47211 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47042 * 300.00324 * 21 19 17 25 25 C 1.47425 * 108.55844 * 358.92123 * 16 15 14 26 26 H 1.09001 * 109.46898 * 300.00537 * 1 2 3 27 27 H 1.09000 * 109.46706 * 59.99990 * 1 2 3 28 28 H 1.08998 * 109.47322 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46928 * 239.99991 * 2 1 3 30 30 H 1.09004 * 109.47169 * 120.00068 * 2 1 3 31 31 H 1.08997 * 111.12721 * 270.23791 * 8 6 4 32 32 H 1.08994 * 111.12909 * 34.40593 * 8 6 4 33 33 H 1.08998 * 110.36737 * 204.80222 * 9 8 6 34 34 H 1.08997 * 110.21002 * 82.75037 * 9 8 6 35 35 H 1.08996 * 109.83523 * 238.77761 * 11 10 9 36 36 H 1.08997 * 109.90623 * 117.83774 * 11 10 9 37 37 H 1.08998 * 110.71756 * 35.79010 * 14 12 3 38 38 H 1.09004 * 110.71565 * 159.06323 * 14 12 3 39 39 H 1.09004 * 109.87879 * 97.22315 * 15 14 12 40 40 H 1.08996 * 109.88124 * 218.23642 * 15 14 12 41 41 H 0.96991 * 119.99788 * 180.02562 * 20 19 17 42 42 H 1.08998 * 110.36896 * 265.26465 * 25 16 15 43 43 H 1.09000 * 110.36094 * 143.04995 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2350 2.0194 -1.1671 5 8 2.7434 3.1204 -1.1710 6 6 1.8453 1.3649 -2.4675 7 1 1.0164 0.6729 -2.3183 8 6 1.4888 2.4318 -3.5382 9 6 1.8459 1.6677 -4.8412 10 8 3.0066 0.8867 -4.5154 11 6 3.0538 0.6455 -3.1043 12 6 2.2714 2.0687 1.2687 13 1 2.5846 3.0986 1.0975 14 6 3.3201 1.3021 2.1171 15 6 2.4748 0.2125 2.8097 16 7 1.0781 0.6803 2.8173 17 6 0.0065 -0.0057 3.3233 18 1 -0.9816 0.4281 3.2800 19 6 0.1902 -1.2587 3.8919 20 7 1.3945 -1.7871 3.9451 21 14 -1.2718 -2.1949 4.5814 22 1 -2.2617 -2.4331 3.5004 23 1 -0.8126 -3.4968 5.1284 24 1 -1.9034 -1.3987 5.6642 25 6 1.0262 2.0127 2.1885 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.4288 2.6833 -3.5046 32 1 2.1059 3.3231 -3.4254 33 1 2.0755 2.3704 -5.6422 34 1 1.0220 1.0170 -5.1340 35 1 3.9806 1.0439 -2.6918 36 1 2.9920 -0.4250 -2.9085 37 1 4.0796 0.8526 1.4774 38 1 3.7769 1.9625 2.8543 39 1 2.5489 -0.7228 2.2546 40 1 2.8244 0.0657 3.8315 41 1 1.5227 -2.6628 4.3420 42 1 1.0800 2.7929 2.9477 43 1 0.1148 2.1191 1.6001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033766047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:43 Heat of formation + Delta-G solvation = -56.500727 kcal Electronic energy + Delta-G solvation = -24133.984745 eV Core-core repulsion = 20793.867480 eV Total energy + Delta-G solvation = -3340.117265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.76690 -40.09277 -38.78319 -36.12915 -34.36603 -33.12597 -31.83813 -30.61495 -30.37335 -28.96966 -26.41530 -24.94713 -23.65961 -23.34673 -21.92044 -21.56037 -19.85249 -18.87916 -18.76433 -17.59008 -17.38272 -16.65085 -16.52870 -15.89413 -15.79842 -15.57494 -15.27361 -14.63943 -14.53158 -14.21384 -14.07948 -13.77686 -13.66749 -13.37689 -13.13583 -12.89963 -12.76809 -12.58633 -12.50779 -12.37762 -12.23124 -12.05912 -11.97480 -11.87534 -11.79318 -11.50445 -11.43106 -10.79983 -10.56315 -10.50306 -9.66126 -8.77925 -7.77398 -5.10343 1.46630 1.50964 1.52304 1.57790 1.96295 2.54391 2.84000 3.32453 3.43206 3.54615 3.69352 3.84929 3.90982 4.01805 4.08341 4.13282 4.21339 4.30057 4.32864 4.54800 4.59435 4.63324 4.69185 4.70187 4.77443 4.84276 4.86846 4.89575 4.97111 5.05009 5.06077 5.14099 5.21214 5.53627 5.62541 5.66484 5.72083 5.86558 5.92278 6.24406 6.49176 7.11060 7.17021 7.82800 8.48538 9.32821 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.004998 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.136046 B = 5600.399088 C = 6029.701377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 N -0.583 5.583 4 C 0.524 3.476 5 O -0.579 6.579 6 C -0.145 4.145 7 H 0.124 0.876 8 C -0.137 4.137 9 C 0.051 3.949 10 O -0.400 6.400 11 C 0.072 3.928 12 C 0.131 3.869 13 H 0.103 0.897 14 C -0.143 4.143 15 C 0.186 3.814 16 N -0.609 5.609 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.053 4.053 20 N -0.947 5.947 21 Si 0.963 3.037 22 H -0.277 1.277 23 H -0.300 1.300 24 H -0.286 1.286 25 C 0.125 3.875 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.005 0.995 41 H 0.245 0.755 42 H 0.032 0.968 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 4.711 -14.245 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.313 5.313 4 C 0.313 3.687 5 O -0.460 6.460 6 C -0.166 4.166 7 H 0.142 0.858 8 C -0.174 4.174 9 C -0.024 4.024 10 O -0.319 6.319 11 C -0.005 4.005 12 C 0.027 3.973 13 H 0.121 0.879 14 C -0.182 4.182 15 C 0.062 3.938 16 N -0.336 5.336 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.247 4.247 20 N -0.596 5.596 21 Si 0.793 3.207 22 H -0.203 1.203 23 H -0.226 1.226 24 H -0.213 1.213 25 C -0.001 4.001 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.052 0.948 40 H 0.023 0.977 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.105 5.001 -14.272 15.123 hybrid contribution -0.781 -0.682 1.262 1.634 sum -0.676 4.319 -13.010 13.725 Atomic orbital electron populations 1.22158 0.95381 1.02065 1.01973 1.21910 0.95432 0.81146 1.03957 1.47903 1.63822 1.14729 1.04871 1.20630 0.77339 0.85137 0.85564 1.90632 1.45440 1.22246 1.87640 1.23012 1.01076 0.99894 0.92635 0.85828 1.23281 1.03989 0.97747 0.92428 1.23630 0.88017 0.93841 0.96949 1.88374 1.46839 1.74127 1.22593 1.22962 0.96385 1.00330 0.80865 1.22099 0.95665 0.96636 0.82932 0.87901 1.23130 0.97447 0.98767 0.98845 1.21041 0.82980 0.93515 0.96312 1.44657 1.03808 1.15834 1.69255 1.19139 0.87482 0.97828 1.30482 0.90456 1.25346 0.98490 0.98576 1.02273 1.70114 1.20918 1.17437 1.51149 0.85381 0.79389 0.77573 0.78336 1.20285 1.22639 1.21275 1.22015 0.96398 0.88001 0.93693 0.92055 0.92337 0.92426 0.89761 0.89286 0.87726 0.90573 0.87979 0.89937 0.92279 0.89040 0.90800 0.90111 0.94816 0.97674 0.94592 0.95053 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 9.60 71.98 0.69 -4.23 16 2 C 0.10 3.05 4.86 86.38 0.42 3.47 16 3 N -0.58 -18.46 2.53 -790.11 -2.00 -20.46 16 4 C 0.52 15.91 6.66 87.66 0.58 16.49 16 5 O -0.58 -21.03 15.30 -3.02 -0.05 -21.08 16 6 C -0.14 -3.33 2.38 -10.28 -0.02 -3.36 16 7 H 0.12 2.48 5.50 -2.39 -0.01 2.46 16 8 C -0.14 -2.73 6.54 32.14 0.21 -2.52 16 9 C 0.05 0.89 7.78 72.74 0.57 1.46 16 10 O -0.40 -9.48 11.36 -148.98 -1.69 -11.17 16 11 C 0.07 1.65 7.16 72.45 0.52 2.16 16 12 C 0.13 4.53 3.65 46.39 0.17 4.70 16 13 H 0.10 3.52 7.04 -2.39 -0.02 3.50 16 14 C -0.14 -5.09 6.43 31.78 0.20 -4.88 16 15 C 0.19 8.37 4.28 86.68 0.37 8.74 16 16 N -0.61 -27.81 2.09 -691.29 -1.44 -29.25 16 17 C -0.22 -11.11 9.00 84.03 0.76 -10.35 16 18 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 19 C -0.05 -2.80 5.49 84.86 0.47 -2.33 16 20 N -0.95 -52.67 10.34 21.65 0.22 -52.45 16 21 Si 0.96 43.18 29.55 68.60 2.03 45.21 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 25 C 0.12 4.80 5.94 86.86 0.52 5.31 16 26 H 0.06 2.29 3.87 -2.39 -0.01 2.28 16 27 H 0.06 1.49 6.91 -2.39 -0.02 1.47 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 2.15 6.33 -2.38 -0.02 2.13 16 30 H 0.09 3.48 3.83 -2.38 -0.01 3.47 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 1.84 7.23 -2.39 -0.02 1.82 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.52 7.81 -2.39 -0.02 1.50 16 36 H 0.09 1.80 7.85 -2.39 -0.02 1.79 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.03 1.66 5.31 -2.38 -0.01 1.65 16 40 H 0.01 0.26 7.52 -2.39 -0.02 0.25 16 41 H 0.24 13.54 8.31 -92.72 -0.77 12.77 16 42 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.05 1.86 6.54 -2.39 -0.02 1.85 16 Total: -1.00 -61.33 321.16 3.53 -57.81 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 1.01 Total: 16.74 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 5.45 Total: 14.66 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -3.22 Total: -102.16 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.74 Total: -32.25 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -61.33 3.53 -57.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033766047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.305 kcal (2) G-P(sol) polarization free energy of solvation -61.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds