Wall clock time and date at job start Tue Mar 31 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46745 * 2 1 4 4 C 1.34780 * 119.99671 * 270.56403 * 3 2 1 5 5 O 1.21287 * 119.99758 * 185.03038 * 4 3 2 6 6 C 1.50694 * 120.00070 * 5.03324 * 4 3 2 7 7 H 1.09005 * 110.45627 * 36.25518 * 6 4 3 8 8 C 1.54511 * 110.51068 * 158.85796 * 6 4 3 9 9 C 1.54484 * 104.06055 * 118.64603 * 8 6 4 10 10 O 1.44416 * 104.80248 * 23.98070 * 9 8 6 11 11 C 1.44426 * 105.27993 * 319.48900 * 10 9 8 12 12 C 1.46496 * 120.00075 * 90.57104 * 3 2 1 13 13 H 1.09004 * 110.78070 * 188.84599 * 12 3 2 14 14 C 1.55400 * 110.85694 * 312.14745 * 12 3 2 15 15 C 1.54902 * 101.66885 * 153.70103 * 14 12 3 16 16 N 1.47419 * 104.83614 * 323.07581 * 15 14 12 17 17 C 1.36936 * 125.65441 * 204.16277 * 16 15 14 18 18 H 1.08000 * 120.00364 * 179.97438 * 17 16 15 19 19 C 1.38813 * 119.99757 * 359.96171 * 17 16 15 20 20 N 1.31623 * 119.99863 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99897 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47396 * 59.99787 * 21 19 17 23 23 H 1.48504 * 109.47066 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47120 * 299.99681 * 21 19 17 25 25 C 1.47020 * 108.69978 * 24.12832 * 16 15 14 26 26 H 1.09000 * 109.46825 * 65.86386 * 1 2 3 27 27 H 1.08998 * 109.47009 * 185.85693 * 1 2 3 28 28 H 1.08995 * 109.47781 * 305.86227 * 1 2 3 29 29 H 1.08991 * 109.47593 * 239.99486 * 2 1 3 30 30 H 1.09002 * 109.46339 * 119.99425 * 2 1 3 31 31 H 1.08999 * 110.51319 * 237.29079 * 8 6 4 32 32 H 1.08998 * 110.51145 * 359.86252 * 8 6 4 33 33 H 1.09001 * 110.36832 * 142.81386 * 9 8 6 34 34 H 1.08995 * 110.37289 * 265.14807 * 9 8 6 35 35 H 1.09008 * 110.37055 * 281.68667 * 11 10 9 36 36 H 1.08993 * 110.37803 * 159.34723 * 11 10 9 37 37 H 1.09000 * 110.88678 * 35.62585 * 14 12 3 38 38 H 1.09007 * 111.07007 * 271.85287 * 14 12 3 39 39 H 1.09005 * 110.36991 * 204.23561 * 15 14 12 40 40 H 1.09002 * 110.46210 * 81.96599 * 15 14 12 41 41 H 0.96997 * 119.99234 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.88678 * 118.35848 * 25 16 15 43 43 H 1.09000 * 109.88762 * 239.36603 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2320 2.0204 -1.1672 5 8 2.7219 3.1299 -1.1702 6 6 1.8623 1.3565 -2.4685 7 1 0.9497 0.7718 -2.3521 8 6 1.6910 2.4110 -3.5848 9 6 2.7655 2.0313 -4.6278 10 8 3.0167 0.6268 -4.4043 11 6 3.0198 0.4644 -2.9692 12 6 2.2743 2.0676 1.2686 13 1 2.4800 3.1250 1.1016 14 6 1.0793 1.8884 2.2457 15 6 1.7749 2.0359 3.6218 16 7 3.0865 1.3844 3.4536 17 6 3.8492 0.8539 4.4596 18 1 4.8003 0.3955 4.2320 19 6 3.4000 0.9055 5.7720 20 7 2.2413 1.4649 6.0495 21 14 4.4401 0.1813 7.1442 22 1 5.7538 0.8723 7.1872 23 1 3.7428 0.3635 8.4427 24 1 4.6506 -1.2672 6.8939 25 6 3.4399 1.3978 2.0265 26 1 -0.3633 0.4202 -0.9378 27 1 -0.3633 -1.0223 0.1049 28 1 -0.3634 0.6020 0.8328 29 1 1.8934 -0.5139 -0.8898 30 1 1.8932 -0.5138 0.8901 31 1 0.6947 2.3461 -4.0219 32 1 1.8714 3.4127 -3.1948 33 1 2.3881 2.1933 -5.6375 34 1 3.6745 2.6100 -4.4641 35 1 3.9678 0.8030 -2.5511 36 1 2.8379 -0.5772 -2.7047 37 1 0.6335 0.8997 2.1372 38 1 0.3329 2.6693 2.0994 39 1 1.1967 1.5304 4.3954 40 1 1.9037 3.0888 3.8728 41 1 1.9277 1.5012 6.9666 42 1 4.3562 1.9688 1.8767 43 1 3.5767 0.3773 1.6688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033766048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:45 Heat of formation + Delta-G solvation = -66.855475 kcal Electronic energy + Delta-G solvation = -23488.657144 eV Core-core repulsion = 20148.090863 eV Total energy + Delta-G solvation = -3340.566281 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78460 -39.96638 -38.73700 -36.74954 -34.34329 -33.15147 -31.60370 -31.14576 -30.28714 -28.72418 -26.56935 -24.94215 -23.96124 -23.39223 -22.13717 -21.34274 -19.83534 -18.98465 -18.86258 -17.67070 -17.22235 -16.72365 -16.49115 -16.10982 -16.01919 -15.69511 -15.09276 -14.96126 -14.75565 -14.19831 -13.97499 -13.77580 -13.63410 -13.46751 -13.18893 -12.99499 -12.92746 -12.66737 -12.50981 -12.45926 -12.22463 -12.18515 -12.07120 -11.86868 -11.74607 -11.64872 -11.34852 -10.87027 -10.84414 -10.75165 -9.72918 -8.93481 -7.79276 -5.25114 1.45083 1.47159 1.50090 1.56435 1.83844 2.49321 2.92607 3.30676 3.37178 3.55620 3.69358 3.78463 3.85237 3.93970 4.00791 4.09192 4.20243 4.24008 4.27780 4.40298 4.51264 4.55498 4.59163 4.69244 4.72002 4.81813 4.85416 4.87880 4.95181 4.99496 5.01805 5.03394 5.12447 5.40669 5.43923 5.56865 5.60281 5.70804 5.75734 6.27174 6.39279 7.06667 7.08124 7.73520 8.37186 9.22156 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032347 B = 0.003930 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.417839 B = 7123.571281 C = 7274.913115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 N -0.592 5.592 4 C 0.519 3.481 5 O -0.582 6.582 6 C -0.138 4.138 7 H 0.135 0.865 8 C -0.143 4.143 9 C 0.043 3.957 10 O -0.383 6.383 11 C 0.060 3.940 12 C 0.142 3.858 13 H 0.081 0.919 14 C -0.134 4.134 15 C 0.155 3.845 16 N -0.621 5.621 17 C -0.244 4.244 18 H 0.079 0.921 19 C -0.061 4.061 20 N -0.947 5.947 21 Si 0.982 3.018 22 H -0.282 1.282 23 H -0.292 1.292 24 H -0.273 1.273 25 C 0.131 3.869 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.082 0.918 40 H -0.017 1.017 41 H 0.249 0.751 42 H 0.007 0.993 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.646 -4.169 -19.542 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 N -0.322 5.322 4 C 0.308 3.692 5 O -0.462 6.462 6 C -0.159 4.159 7 H 0.152 0.848 8 C -0.181 4.181 9 C -0.033 4.033 10 O -0.302 6.302 11 C -0.017 4.017 12 C 0.038 3.962 13 H 0.099 0.901 14 C -0.173 4.173 15 C 0.030 3.970 16 N -0.347 5.347 17 C -0.373 4.373 18 H 0.097 0.903 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.810 3.190 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.199 1.199 25 C 0.004 3.996 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.001 0.999 41 H 0.059 0.941 42 H 0.025 0.975 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.352 -3.801 -19.492 20.568 hybrid contribution 0.776 0.380 1.495 1.727 sum -4.576 -3.420 -17.997 18.882 Atomic orbital electron populations 1.22409 0.94133 1.03861 1.02899 1.21856 0.95960 0.80610 1.04307 1.47998 1.64512 1.15236 1.04470 1.20971 0.76921 0.85359 0.85935 1.90663 1.45682 1.22264 1.87607 1.22833 1.02688 0.98892 0.91514 0.84755 1.22965 1.01642 0.99084 0.94388 1.23565 0.97414 0.81497 1.00814 1.89113 1.93239 1.26131 1.21710 1.23388 0.95800 1.01223 0.81264 1.21786 0.95301 0.96264 0.82894 0.90128 1.23385 0.96397 1.02962 0.94534 1.21737 0.86331 0.93856 0.95060 1.44681 1.20337 1.68083 1.01638 1.19389 1.00599 1.30497 0.86812 0.90333 1.25616 0.98806 1.01657 0.99323 1.70014 1.21107 1.50232 1.18237 0.85111 0.77510 0.78419 0.78008 1.20857 1.21746 1.19913 1.21599 0.95306 0.97835 0.84839 0.91108 0.89398 0.92607 0.87667 0.90712 0.87760 0.90523 0.86429 0.92877 0.93347 0.85656 0.89055 0.90347 0.89964 0.99902 0.94140 0.97466 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.97 9.73 71.98 0.70 -2.27 16 2 C 0.09 1.95 4.76 86.38 0.41 2.36 16 3 N -0.59 -16.58 2.49 -790.78 -1.97 -18.55 16 4 C 0.52 14.56 6.74 87.65 0.59 15.15 16 5 O -0.58 -21.37 14.96 -3.05 -0.05 -21.41 16 6 C -0.14 -2.62 2.53 -10.53 -0.03 -2.65 16 7 H 0.13 1.83 5.80 -2.38 -0.01 1.82 16 8 C -0.14 -2.57 6.62 31.61 0.21 -2.36 16 9 C 0.04 0.76 7.63 72.49 0.55 1.31 16 10 O -0.38 -7.84 11.65 -148.98 -1.74 -9.57 16 11 C 0.06 1.12 6.66 72.48 0.48 1.61 16 12 C 0.14 5.20 3.32 46.27 0.15 5.36 16 13 H 0.08 3.30 7.09 -2.38 -0.02 3.28 16 14 C -0.13 -4.90 5.80 32.07 0.19 -4.71 16 15 C 0.16 7.67 5.89 86.85 0.51 8.18 16 16 N -0.62 -32.34 3.39 -692.01 -2.35 -34.69 16 17 C -0.24 -13.76 10.27 84.03 0.86 -12.90 16 18 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 19 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 20 N -0.95 -55.75 10.09 21.65 0.22 -55.53 16 21 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 25 C 0.13 5.64 6.78 86.73 0.59 6.23 16 26 H 0.07 0.97 6.72 -2.39 -0.02 0.95 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.18 5.44 -2.39 -0.01 1.16 16 29 H 0.11 1.52 5.57 -2.39 -0.01 1.51 16 30 H 0.07 1.85 6.83 -2.39 -0.02 1.84 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.75 6.73 -2.39 -0.02 1.73 16 33 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 1.07 7.86 -2.38 -0.02 1.06 16 36 H 0.13 1.65 7.24 -2.39 -0.02 1.63 16 37 H 0.09 3.04 4.98 -2.39 -0.01 3.03 16 38 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 39 H 0.08 4.53 5.87 -2.38 -0.01 4.52 16 40 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 41 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.04 1.57 6.82 -2.39 -0.02 1.55 16 Total: -1.00 -70.46 325.75 2.84 -67.62 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.01 Total: 12.49 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.69 Total: 12.33 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -4.10 Total: -108.77 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -1.78 Total: -30.99 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -70.46 2.84 -67.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033766048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.763 kcal (2) G-P(sol) polarization free energy of solvation -70.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds