Wall clock time and date at job start Tue Mar 31 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46492 * 109.47177 * 2 1 4 4 C 1.34774 * 120.00211 * 84.23753 * 3 2 1 5 5 O 1.21278 * 120.00426 * 184.05442 * 4 3 2 6 6 C 1.50708 * 119.99829 * 4.05608 * 4 3 2 7 7 H 1.09000 * 110.44986 * 325.83463 * 6 4 3 8 8 C 1.54511 * 110.50855 * 203.23667 * 6 4 3 9 9 C 1.54474 * 104.06228 * 241.35153 * 8 6 4 10 10 O 1.44431 * 104.80495 * 23.97997 * 9 8 6 11 11 C 1.44786 * 105.29139 * 319.45702 * 10 9 8 12 12 C 1.46506 * 120.00109 * 264.23257 * 3 2 1 13 13 H 1.09000 * 110.64207 * 170.51486 * 12 3 2 14 14 C 1.55154 * 110.86999 * 47.26844 * 12 3 2 15 15 C 1.55133 * 101.48726 * 205.89715 * 14 12 3 16 16 N 1.47422 * 104.71667 * 37.29494 * 15 14 12 17 17 C 1.36944 * 125.64327 * 155.82029 * 16 15 14 18 18 H 1.08002 * 119.99766 * 192.83090 * 17 16 15 19 19 C 1.38807 * 120.00083 * 12.83551 * 17 16 15 20 20 N 1.31619 * 119.99782 * 204.91473 * 19 17 16 21 21 Si 1.86803 * 120.00057 * 24.91313 * 19 17 16 22 22 H 1.48503 * 109.47158 * 270.00060 * 21 19 17 23 23 H 1.48506 * 109.47013 * 150.00225 * 21 19 17 24 24 H 1.48504 * 109.47177 * 30.00191 * 21 19 17 25 25 C 1.47023 * 108.70952 * 335.55088 * 16 15 14 26 26 H 1.09001 * 109.47376 * 305.65120 * 1 2 3 27 27 H 1.08997 * 109.47388 * 65.65499 * 1 2 3 28 28 H 1.09000 * 109.47768 * 185.65444 * 1 2 3 29 29 H 1.09003 * 109.46709 * 239.99940 * 2 1 3 30 30 H 1.09007 * 109.47003 * 120.00579 * 2 1 3 31 31 H 1.08997 * 110.51318 * 359.97438 * 8 6 4 32 32 H 1.09005 * 110.50911 * 122.57052 * 8 6 4 33 33 H 1.08994 * 110.37534 * 142.80929 * 9 8 6 34 34 H 1.08998 * 110.37131 * 265.15152 * 9 8 6 35 35 H 1.09006 * 110.42632 * 281.77268 * 11 10 9 36 36 H 1.09005 * 110.48947 * 159.32877 * 11 10 9 37 37 H 1.09005 * 111.00442 * 324.13809 * 14 12 3 38 38 H 1.08998 * 111.00720 * 87.98600 * 14 12 3 39 39 H 1.08998 * 110.49665 * 278.45369 * 15 14 12 40 40 H 1.08995 * 110.34255 * 156.05560 * 15 14 12 41 41 H 0.96997 * 120.00337 * 354.93621 * 20 19 17 42 42 H 1.09001 * 109.88235 * 120.70587 * 25 16 15 43 43 H 1.08993 * 109.88611 * 241.87438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1324 2.0556 1.1613 5 8 2.4661 3.2215 1.1551 6 6 1.8454 1.3608 2.4675 7 1 1.0470 0.6294 2.3424 8 6 1.4707 2.3901 3.5572 9 6 2.5659 2.2140 4.6323 10 8 3.6914 1.6506 3.9237 11 6 3.1217 0.6815 3.0112 12 6 2.3827 2.0293 -1.2623 13 1 2.5633 3.0933 -1.1098 14 6 1.2838 1.8073 -2.3350 15 6 2.1033 1.9294 -3.6466 16 7 3.3972 1.2928 -3.3404 17 6 4.2537 0.7445 -4.2575 18 1 5.0723 0.1221 -3.9273 19 6 4.0699 0.9888 -5.6115 20 7 4.5265 0.1342 -6.5023 21 14 3.1746 2.5304 -6.1694 22 1 1.7208 2.2470 -6.2769 23 1 3.6957 2.9535 -7.4941 24 1 3.3954 3.6163 -5.1807 25 6 3.6189 1.3498 -1.8881 26 1 -0.3634 0.5990 0.8351 27 1 -0.3634 0.4236 -0.9362 28 1 -0.3634 -1.0226 0.1012 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 1.4936 3.4015 3.1513 32 1 0.4872 2.1674 3.9709 33 1 2.8334 3.1788 5.0631 34 1 2.2270 1.5306 5.4108 35 1 2.8667 -0.2362 3.5412 36 1 3.8153 0.4703 2.1972 37 1 0.8387 0.8169 -2.2392 38 1 0.5209 2.5838 -2.2793 39 1 2.2488 2.9771 -3.9096 40 1 1.6024 1.3999 -4.4570 41 1 5.0547 -0.6278 -6.2172 42 1 3.7287 0.3410 -1.4900 43 1 4.5126 1.9351 -1.6721 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033766051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:48 Heat of formation + Delta-G solvation = -47.179479 kcal Electronic energy + Delta-G solvation = -23610.334985 eV Core-core repulsion = 20270.621919 eV Total energy + Delta-G solvation = -3339.713065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.75133 -38.92619 -37.43809 -35.51400 -32.78647 -32.11770 -30.68989 -29.84972 -29.20504 -27.72372 -24.36262 -23.93233 -23.14753 -22.24708 -20.89376 -20.04085 -18.72548 -17.68965 -17.45805 -16.71395 -16.30715 -15.94962 -15.31004 -15.18014 -14.52008 -14.16078 -14.01785 -13.79459 -13.46302 -13.25939 -12.92124 -12.69214 -12.44590 -12.21320 -12.16894 -11.74377 -11.70427 -11.56236 -11.40932 -11.25761 -11.13441 -11.02501 -10.95151 -10.62707 -10.12470 -9.97953 -9.67526 -9.53116 -9.25692 -8.60209 -8.45850 -7.09246 -6.32863 -3.21496 2.55553 2.93519 3.41101 3.54124 3.68051 3.71786 4.19672 4.33967 4.58952 4.61893 4.77737 4.86000 4.89036 4.98627 5.03646 5.07276 5.15186 5.26368 5.28545 5.37189 5.38186 5.43479 5.47640 5.54915 5.57762 5.63025 5.69701 5.85424 5.89367 5.91204 6.10639 6.21606 6.38220 6.50380 6.50855 6.57083 6.73967 6.80132 7.45983 7.70142 8.19752 8.33522 9.02801 9.57566 10.24564 11.15013 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030111 B = 0.004312 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.672029 B = 6492.198246 C = 6592.662585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 N -0.597 5.597 4 C 0.523 3.477 5 O -0.534 6.534 6 C -0.148 4.148 7 H 0.107 0.893 8 C -0.144 4.144 9 C 0.047 3.953 10 O -0.368 6.368 11 C 0.061 3.939 12 C 0.127 3.873 13 H 0.105 0.895 14 C -0.140 4.140 15 C 0.106 3.894 16 N -0.606 5.606 17 C -0.327 4.327 18 H 0.075 0.925 19 C -0.019 4.019 20 N -0.920 5.920 21 Si 1.063 2.937 22 H -0.293 1.293 23 H -0.298 1.298 24 H -0.286 1.286 25 C 0.128 3.872 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.262 0.738 42 H 0.032 0.968 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 -0.347 20.500 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.024 4.024 3 N -0.329 5.329 4 C 0.310 3.690 5 O -0.410 6.410 6 C -0.169 4.169 7 H 0.125 0.875 8 C -0.182 4.182 9 C -0.029 4.029 10 O -0.286 6.286 11 C -0.017 4.017 12 C 0.023 3.977 13 H 0.123 0.877 14 C -0.179 4.179 15 C -0.019 4.019 16 N -0.334 5.334 17 C -0.455 4.455 18 H 0.093 0.907 19 C -0.219 4.219 20 N -0.561 5.561 21 Si 0.895 3.105 22 H -0.221 1.221 23 H -0.226 1.226 24 H -0.213 1.213 25 C 0.001 3.999 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.773 1.072 19.123 21.975 hybrid contribution 0.342 -0.964 1.264 1.626 sum -10.432 0.108 20.387 22.901 Atomic orbital electron populations 1.22375 0.95744 1.02250 1.02969 1.21584 0.94438 0.82682 1.03720 1.47950 1.64539 1.14070 1.06372 1.20255 0.77054 0.86732 0.84914 1.90676 1.47054 1.16442 1.86840 1.22801 1.00545 0.99386 0.94203 0.87518 1.22981 0.99291 1.01125 0.94786 1.23408 0.86194 0.99097 0.94247 1.89243 1.29222 1.56001 1.54183 1.23366 0.93301 0.91821 0.93201 1.22200 0.95478 0.98305 0.81700 0.87705 1.23232 0.97064 1.02003 0.95630 1.22047 0.87205 0.96974 0.95678 1.44770 1.17877 1.69500 1.01236 1.20036 1.11428 1.26370 0.87633 0.90711 1.25868 1.01874 1.02980 0.91193 1.70914 1.36346 1.13154 1.35712 0.83865 0.75252 0.76535 0.74845 1.22116 1.22600 1.21325 1.21599 0.94650 0.97546 0.86087 0.92665 0.91341 0.91427 0.88918 0.90849 0.88665 0.90132 0.88865 0.92260 0.90976 0.88662 0.90340 0.91301 0.94958 0.91872 0.92726 0.95040 0.95181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.65 37.15 0.36 -1.21 16 2 C 0.10 1.07 4.64 -4.05 -0.02 1.05 16 3 N -0.60 -8.39 2.48 -164.03 -0.41 -8.80 16 4 C 0.52 7.53 6.68 -10.98 -0.07 7.46 16 5 O -0.53 -9.80 14.98 5.56 0.08 -9.72 16 6 C -0.15 -1.51 2.54 -90.20 -0.23 -1.74 16 7 H 0.11 0.82 5.67 -51.93 -0.29 0.52 16 8 C -0.14 -1.36 6.61 -25.16 -0.17 -1.53 16 9 C 0.05 0.44 7.63 37.93 0.29 0.73 16 10 O -0.37 -4.69 11.66 -35.23 -0.41 -5.10 16 11 C 0.06 0.62 6.80 37.93 0.26 0.88 16 12 C 0.13 2.19 3.30 -66.09 -0.22 1.98 16 13 H 0.10 1.99 7.03 -51.93 -0.37 1.62 16 14 C -0.14 -2.34 6.07 -24.46 -0.15 -2.49 16 15 C 0.11 2.30 4.71 -2.41 -0.01 2.29 16 16 N -0.61 -14.88 3.26 -169.94 -0.55 -15.44 16 17 C -0.33 -9.39 10.44 -15.06 -0.16 -9.55 16 18 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 19 C -0.02 -0.55 5.42 -17.43 -0.09 -0.64 16 20 N -0.92 -28.75 13.70 55.49 0.76 -27.99 16 21 Si 1.06 26.76 24.69 -169.99 -4.20 22.56 16 22 H -0.29 -6.90 6.62 56.52 0.37 -6.53 16 23 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 24 H -0.29 -6.94 6.25 56.52 0.35 -6.59 16 25 C 0.13 2.66 6.78 -3.06 -0.02 2.63 16 26 H 0.05 0.46 7.16 -51.93 -0.37 0.09 16 27 H 0.07 0.70 6.07 -51.93 -0.31 0.39 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 1.17 6.70 -51.93 -0.35 0.82 16 30 H 0.07 0.62 6.45 -51.93 -0.33 0.29 16 31 H 0.09 1.13 6.77 -51.93 -0.35 0.77 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.10 1.07 7.86 -51.93 -0.41 0.66 16 37 H 0.08 1.20 5.08 -51.93 -0.26 0.94 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.03 0.72 5.60 -51.93 -0.29 0.43 16 40 H 0.06 1.43 6.26 -51.93 -0.33 1.10 16 41 H 0.26 8.10 8.73 -40.82 -0.36 7.75 16 42 H 0.03 0.64 6.95 -51.93 -0.36 0.28 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 323.42 15.07 4.87 4.87 Total: -1.00 -34.34 323.42 -6.73 -41.06 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.64 Total: -1.31 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.23 Total: -0.14 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.20 Total: -52.23 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.33 Total: -14.82 kcal Atomic # 14 Polarization: 26.76 SS G_CDS: -4.20 Total: 22.56 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.34 -6.73 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033766051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.115 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds