Wall clock time and date at job start Tue Mar 31 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46492 * 109.47177 * 2 1 4 4 C 1.34774 * 120.00211 * 84.23753 * 3 2 1 5 5 O 1.21278 * 120.00426 * 184.05442 * 4 3 2 6 6 C 1.50708 * 119.99829 * 4.05608 * 4 3 2 7 7 H 1.09000 * 110.44986 * 325.83463 * 6 4 3 8 8 C 1.54511 * 110.50855 * 203.23667 * 6 4 3 9 9 C 1.54474 * 104.06228 * 241.35153 * 8 6 4 10 10 O 1.44431 * 104.80495 * 23.97997 * 9 8 6 11 11 C 1.44786 * 105.29139 * 319.45702 * 10 9 8 12 12 C 1.46506 * 120.00109 * 264.23257 * 3 2 1 13 13 H 1.09000 * 110.64207 * 170.51486 * 12 3 2 14 14 C 1.55154 * 110.86999 * 47.26844 * 12 3 2 15 15 C 1.55133 * 101.48726 * 205.89715 * 14 12 3 16 16 N 1.47422 * 104.71667 * 37.29494 * 15 14 12 17 17 C 1.36944 * 125.64327 * 155.82029 * 16 15 14 18 18 H 1.08002 * 119.99766 * 192.83090 * 17 16 15 19 19 C 1.38807 * 120.00083 * 12.83551 * 17 16 15 20 20 N 1.31619 * 119.99782 * 204.91473 * 19 17 16 21 21 Si 1.86803 * 120.00057 * 24.91313 * 19 17 16 22 22 H 1.48503 * 109.47158 * 270.00060 * 21 19 17 23 23 H 1.48506 * 109.47013 * 150.00225 * 21 19 17 24 24 H 1.48504 * 109.47177 * 30.00191 * 21 19 17 25 25 C 1.47023 * 108.70952 * 335.55088 * 16 15 14 26 26 H 1.09001 * 109.47376 * 305.65120 * 1 2 3 27 27 H 1.08997 * 109.47388 * 65.65499 * 1 2 3 28 28 H 1.09000 * 109.47768 * 185.65444 * 1 2 3 29 29 H 1.09003 * 109.46709 * 239.99940 * 2 1 3 30 30 H 1.09007 * 109.47003 * 120.00579 * 2 1 3 31 31 H 1.08997 * 110.51318 * 359.97438 * 8 6 4 32 32 H 1.09005 * 110.50911 * 122.57052 * 8 6 4 33 33 H 1.08994 * 110.37534 * 142.80929 * 9 8 6 34 34 H 1.08998 * 110.37131 * 265.15152 * 9 8 6 35 35 H 1.09006 * 110.42632 * 281.77268 * 11 10 9 36 36 H 1.09005 * 110.48947 * 159.32877 * 11 10 9 37 37 H 1.09005 * 111.00442 * 324.13809 * 14 12 3 38 38 H 1.08998 * 111.00720 * 87.98600 * 14 12 3 39 39 H 1.08998 * 110.49665 * 278.45369 * 15 14 12 40 40 H 1.08995 * 110.34255 * 156.05560 * 15 14 12 41 41 H 0.96997 * 120.00337 * 354.93621 * 20 19 17 42 42 H 1.09001 * 109.88235 * 120.70587 * 25 16 15 43 43 H 1.08993 * 109.88611 * 241.87438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1324 2.0556 1.1613 5 8 2.4661 3.2215 1.1551 6 6 1.8454 1.3608 2.4675 7 1 1.0470 0.6294 2.3424 8 6 1.4707 2.3901 3.5572 9 6 2.5659 2.2140 4.6323 10 8 3.6914 1.6506 3.9237 11 6 3.1217 0.6815 3.0112 12 6 2.3827 2.0293 -1.2623 13 1 2.5633 3.0933 -1.1098 14 6 1.2838 1.8073 -2.3350 15 6 2.1033 1.9294 -3.6466 16 7 3.3972 1.2928 -3.3404 17 6 4.2537 0.7445 -4.2575 18 1 5.0723 0.1221 -3.9273 19 6 4.0699 0.9888 -5.6115 20 7 4.5265 0.1342 -6.5023 21 14 3.1746 2.5304 -6.1694 22 1 1.7208 2.2470 -6.2769 23 1 3.6957 2.9535 -7.4941 24 1 3.3954 3.6163 -5.1807 25 6 3.6189 1.3498 -1.8881 26 1 -0.3634 0.5990 0.8351 27 1 -0.3634 0.4236 -0.9362 28 1 -0.3634 -1.0226 0.1012 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 1.4936 3.4015 3.1513 32 1 0.4872 2.1674 3.9709 33 1 2.8334 3.1788 5.0631 34 1 2.2270 1.5306 5.4108 35 1 2.8667 -0.2362 3.5412 36 1 3.8153 0.4703 2.1972 37 1 0.8387 0.8169 -2.2392 38 1 0.5209 2.5838 -2.2793 39 1 2.2488 2.9771 -3.9096 40 1 1.6024 1.3999 -4.4570 41 1 5.0547 -0.6278 -6.2172 42 1 3.7287 0.3410 -1.4900 43 1 4.5126 1.9351 -1.6721 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033766051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:48 Heat of formation + Delta-G solvation = -72.371037 kcal Electronic energy + Delta-G solvation = -23611.427373 eV Core-core repulsion = 20270.621919 eV Total energy + Delta-G solvation = -3340.805453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80143 -40.03422 -38.80955 -36.82864 -34.60125 -33.26497 -31.81022 -31.21707 -30.30755 -29.22053 -26.06320 -24.95363 -24.04934 -23.23151 -22.65959 -21.37935 -19.84643 -19.57273 -18.72876 -17.76011 -17.17150 -17.03053 -16.90249 -16.19109 -15.68427 -15.61412 -15.39661 -15.31023 -14.95679 -14.62861 -14.07705 -13.80797 -13.60149 -13.46063 -13.23991 -13.10389 -12.91832 -12.80694 -12.50857 -12.47141 -12.37445 -12.24949 -11.96318 -11.86639 -11.77591 -11.43509 -11.33683 -10.98164 -10.69010 -10.61989 -9.75745 -9.20355 -8.65756 -5.48504 1.38284 1.47019 1.52758 1.68317 1.82656 2.48712 2.99186 3.03115 3.28323 3.38323 3.53534 3.66459 3.77469 3.88695 4.00572 4.06697 4.16751 4.24832 4.29209 4.32998 4.39560 4.40824 4.52885 4.60128 4.65024 4.72233 4.79767 4.81749 4.84331 4.86954 4.89994 4.98415 5.02382 5.13043 5.16224 5.42518 5.49065 5.56801 5.80172 6.07916 6.37118 6.78946 7.08825 7.41841 8.08102 8.82038 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030111 B = 0.004312 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.672029 B = 6492.198246 C = 6592.662585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 N -0.595 5.595 4 C 0.517 3.483 5 O -0.582 6.582 6 C -0.139 4.139 7 H 0.144 0.856 8 C -0.142 4.142 9 C 0.043 3.957 10 O -0.406 6.406 11 C 0.057 3.943 12 C 0.140 3.860 13 H 0.087 0.913 14 C -0.121 4.121 15 C 0.096 3.904 16 N -0.624 5.624 17 C -0.321 4.321 18 H 0.042 0.958 19 C -0.070 4.070 20 N -0.952 5.952 21 Si 1.103 2.897 22 H -0.263 1.263 23 H -0.304 1.304 24 H -0.276 1.276 25 C 0.128 3.872 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.032 0.968 40 H 0.055 0.945 41 H 0.249 0.751 42 H 0.037 0.963 43 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.878 -0.743 22.870 26.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.307 3.693 5 O -0.461 6.461 6 C -0.160 4.160 7 H 0.162 0.838 8 C -0.180 4.180 9 C -0.033 4.033 10 O -0.326 6.326 11 C -0.020 4.020 12 C 0.035 3.965 13 H 0.105 0.895 14 C -0.159 4.159 15 C -0.028 4.028 16 N -0.352 5.352 17 C -0.450 4.450 18 H 0.060 0.940 19 C -0.264 4.264 20 N -0.596 5.596 21 Si 0.929 3.071 22 H -0.188 1.188 23 H -0.232 1.232 24 H -0.202 1.202 25 C 0.002 3.998 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -13.978 0.645 21.542 25.688 hybrid contribution 1.433 -0.892 0.627 1.800 sum -12.545 -0.246 22.169 25.474 Atomic orbital electron populations 1.22333 0.93594 1.03982 1.02866 1.21864 0.96136 0.80606 1.04323 1.48005 1.64260 1.15264 1.05087 1.21093 0.75780 0.86315 0.86131 1.90659 1.49100 1.18791 1.87563 1.22886 1.01677 0.99936 0.91537 0.83820 1.23002 1.01206 0.99257 0.94495 1.23619 0.85247 0.99816 0.94637 1.89205 1.31348 1.56984 1.55042 1.23541 0.92667 0.92804 0.92962 1.21766 0.94068 0.97174 0.83513 0.89456 1.23156 0.96580 1.04155 0.92051 1.22208 0.86296 0.96194 0.98130 1.44820 1.18711 1.69518 1.02150 1.19920 1.10971 1.25329 0.88768 0.94028 1.27066 1.03033 1.04766 0.91574 1.71020 1.38279 1.13862 1.36390 0.83344 0.76134 0.73363 0.74272 1.18848 1.23193 1.20155 1.21659 0.95859 0.97816 0.84480 0.91366 0.92581 0.89022 0.90825 0.87858 0.91651 0.86560 0.89115 0.89111 0.87111 0.90503 0.88549 0.88395 0.95033 0.92693 0.94152 0.94532 0.97429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 9.65 71.98 0.69 -1.59 16 2 C 0.09 1.71 4.64 86.38 0.40 2.11 16 3 N -0.60 -15.58 2.48 -791.26 -1.97 -17.55 16 4 C 0.52 14.08 6.68 87.66 0.59 14.66 16 5 O -0.58 -21.39 14.98 -3.02 -0.05 -21.44 16 6 C -0.14 -2.38 2.54 -10.52 -0.03 -2.41 16 7 H 0.14 1.38 5.67 -2.39 -0.01 1.36 16 8 C -0.14 -2.26 6.61 31.61 0.21 -2.05 16 9 C 0.04 0.69 7.63 72.48 0.55 1.24 16 10 O -0.41 -9.73 11.66 -148.98 -1.74 -11.46 16 11 C 0.06 1.02 6.80 72.48 0.49 1.51 16 12 C 0.14 4.72 3.30 46.18 0.15 4.88 16 13 H 0.09 3.30 7.03 -2.39 -0.02 3.29 16 14 C -0.12 -3.75 6.07 32.06 0.19 -3.55 16 15 C 0.10 4.03 4.71 86.93 0.41 4.44 16 16 N -0.62 -30.95 3.26 -691.56 -2.26 -33.21 16 17 C -0.32 -19.02 10.44 84.03 0.88 -18.14 16 18 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 19 C -0.07 -4.20 5.42 84.86 0.46 -3.74 16 20 N -0.95 -61.25 13.70 21.65 0.30 -60.95 16 21 Si 1.10 54.10 24.69 68.60 1.69 55.79 16 22 H -0.26 -11.54 6.62 99.48 0.66 -10.88 16 23 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 24 H -0.28 -12.87 6.25 99.48 0.62 -12.25 16 25 C 0.13 5.41 6.78 86.73 0.59 5.99 16 26 H 0.07 0.77 7.16 -2.39 -0.02 0.75 16 27 H 0.06 0.91 6.07 -2.39 -0.01 0.90 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 1.69 6.70 -2.39 -0.02 1.67 16 30 H 0.10 1.31 6.45 -2.38 -0.02 1.29 16 31 H 0.06 1.47 6.77 -2.39 -0.02 1.46 16 32 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.08 1.62 7.86 -2.38 -0.02 1.60 16 37 H 0.10 2.67 5.08 -2.38 -0.01 2.65 16 38 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.03 1.35 5.60 -2.39 -0.01 1.34 16 40 H 0.05 2.39 6.26 -2.39 -0.01 2.38 16 41 H 0.25 16.10 8.73 -92.71 -0.81 15.29 16 42 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 43 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -79.23 323.42 2.41 -76.82 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.83 Total: 8.66 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 5.59 Total: 3.35 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -3.93 Total: -111.71 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -1.78 Total: -32.90 kcal Atomic # 14 Polarization: 54.10 SS G_CDS: 1.69 Total: 55.79 kcal Total: -79.23 2.41 -76.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033766051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.447 kcal (2) G-P(sol) polarization free energy of solvation -79.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds