Wall clock time and date at job start Tue Mar 31 2020 05:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99650 * 2 1 4 4 H 1.09003 * 109.47202 * 30.00328 * 3 2 1 5 5 C 1.52999 * 109.47306 * 270.00054 * 3 2 1 6 6 C 1.50698 * 109.47042 * 149.99871 * 3 2 1 7 7 O 1.21284 * 120.00211 * 9.73695 * 6 3 2 8 8 N 1.34778 * 120.00082 * 190.01111 * 6 3 2 9 9 C 1.46879 * 120.46423 * 4.75650 * 8 6 3 10 10 C 1.52860 * 109.01990 * 235.48919 * 9 8 6 11 11 C 1.52672 * 109.17211 * 307.81824 * 10 9 8 12 12 C 1.53483 * 113.62393 * 188.98958 * 11 10 9 13 13 N 1.47664 * 85.99032 * 137.70894 * 12 11 10 14 14 C 1.36937 * 134.45683 * 155.69880 * 13 12 11 15 15 H 1.07995 * 120.00081 * 179.97438 * 14 13 12 16 16 C 1.38814 * 119.99783 * 359.97438 * 14 13 12 17 17 N 1.31612 * 120.00427 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99699 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47004 * 59.99980 * 18 16 14 20 20 H 1.48505 * 109.46979 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47181 * 299.99695 * 18 16 14 22 22 C 1.47661 * 91.08459 * 335.68318 * 13 12 11 23 23 C 1.52670 * 113.18570 * 57.46031 * 11 10 9 24 24 C 1.46883 * 120.46548 * 185.03234 * 8 6 3 25 25 H 1.09002 * 109.46994 * 299.99913 * 1 2 3 26 26 H 1.08996 * 109.46797 * 60.00435 * 1 2 3 27 27 H 1.09003 * 109.46677 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46729 * 305.08035 * 5 3 2 29 29 H 1.08997 * 109.47165 * 65.07227 * 5 3 2 30 30 H 1.08992 * 109.47400 * 185.07597 * 5 3 2 31 31 H 1.08998 * 109.59157 * 355.31355 * 9 8 6 32 32 H 1.09003 * 109.59290 * 115.74801 * 9 8 6 33 33 H 1.08997 * 109.61357 * 187.84588 * 10 9 8 34 34 H 1.08994 * 109.44914 * 67.69156 * 10 9 8 35 35 H 1.09005 * 113.79416 * 251.98321 * 12 11 10 36 36 H 1.08999 * 113.78821 * 23.43944 * 12 11 10 37 37 H 0.97002 * 120.00666 * 180.02562 * 17 16 14 38 38 H 1.09004 * 113.78995 * 270.04755 * 22 13 12 39 39 H 1.09002 * 113.79160 * 138.58550 * 22 13 12 40 40 H 1.09007 * 109.53160 * 182.52198 * 23 11 10 41 41 H 1.08994 * 109.59375 * 62.33644 * 23 11 10 42 42 H 1.09001 * 109.58485 * 244.25786 * 24 8 6 43 43 H 1.08999 * 109.59067 * 4.68725 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7715 -1.4425 6 6 3.3386 1.2640 0.7104 7 8 3.8304 0.1980 1.0150 8 7 3.9776 2.4117 1.0123 9 6 3.3423 3.7094 0.7480 10 6 4.2706 4.5488 -0.1297 11 6 5.6568 4.5961 0.5083 12 6 6.6121 5.5881 -0.1692 13 7 7.0241 5.9652 1.1978 14 6 8.1516 6.5212 1.7406 15 1 8.2060 6.7028 2.8038 16 6 9.2247 6.8513 0.9243 17 7 9.1587 6.6295 -0.3713 18 14 10.7626 7.6105 1.6648 19 1 11.3444 6.6768 2.6623 20 1 11.7547 7.8671 0.5900 21 1 10.4114 8.8905 2.3308 22 6 5.7327 5.5028 1.7447 23 6 6.2653 3.2131 0.7271 24 6 5.3213 2.3823 1.6046 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.8088 1.0314 -1.9819 29 1 1.2495 1.8881 -1.9294 30 1 2.7424 2.7268 -1.4438 31 1 2.3952 3.5542 0.2313 32 1 3.1663 4.2288 1.6900 33 1 3.8751 5.5607 -0.2173 34 1 4.3403 4.0978 -1.1195 35 1 7.4014 5.1113 -0.7506 36 1 6.1052 6.3861 -0.7116 37 1 9.9087 6.8599 -0.9417 38 1 4.9644 6.2756 1.7711 39 1 5.8230 4.9582 2.6846 40 1 7.2302 3.3140 1.2240 41 1 6.4004 2.7171 -0.2340 42 1 5.2876 2.8062 2.6082 43 1 5.6774 1.3533 1.6520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035664590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:53 Heat of formation + Delta-G solvation = -20.404275 kcal Electronic energy + Delta-G solvation = -23402.696243 eV Core-core repulsion = 20064.144237 eV Total energy + Delta-G solvation = -3338.552005 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.55867 -39.00216 -37.59219 -35.75649 -32.70601 -32.12034 -30.73894 -30.11855 -27.08661 -26.87165 -25.09544 -24.51007 -23.50472 -22.58907 -21.25530 -19.60618 -17.81582 -17.13621 -16.80405 -16.69523 -15.73775 -15.49652 -14.97345 -14.77496 -14.71938 -14.39085 -13.91265 -13.77341 -13.41140 -13.15238 -12.84773 -12.67587 -12.38077 -12.20414 -12.05654 -11.96090 -11.70965 -11.36307 -11.11212 -11.03127 -10.85989 -10.82454 -10.38631 -10.21176 -10.10168 -9.70863 -9.65396 -9.41461 -9.33297 -8.77734 -8.43717 -6.85403 -5.75389 -3.07153 2.62377 2.77411 3.39881 3.44240 3.45260 3.72957 4.38182 4.46478 4.60845 4.79254 4.87080 5.01311 5.03419 5.10528 5.18020 5.29073 5.31495 5.35149 5.42785 5.44916 5.49673 5.52549 5.68703 5.81490 5.89914 5.94611 5.95941 6.17659 6.26069 6.30157 6.43235 6.60596 6.64080 6.78759 6.80513 6.91330 7.23876 7.37847 7.47009 7.59207 8.00178 8.22947 9.06353 9.72595 10.62631 11.41467 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043513 B = 0.003688 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.330457 B = 7589.953562 C = 7761.954365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.070 3.930 4 H 0.083 0.917 5 C -0.175 4.175 6 C 0.515 3.485 7 O -0.527 6.527 8 N -0.603 5.603 9 C 0.104 3.896 10 C -0.120 4.120 11 C -0.108 4.108 12 C 0.173 3.827 13 N -0.609 5.609 14 C -0.223 4.223 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.921 5.921 18 Si 0.910 3.090 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.126 3.874 23 C -0.096 4.096 24 C 0.115 3.885 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.253 0.747 38 H 0.031 0.969 39 H 0.040 0.960 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.789 -7.653 -0.983 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.009 3.991 4 H 0.101 0.899 5 C -0.233 4.233 6 C 0.301 3.699 7 O -0.403 6.403 8 N -0.338 5.338 9 C -0.019 4.019 10 C -0.159 4.159 11 C -0.110 4.110 12 C 0.048 3.952 13 N -0.335 5.335 14 C -0.350 4.350 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.568 5.568 18 Si 0.740 3.260 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.213 1.213 22 C 0.000 4.000 23 C -0.134 4.134 24 C -0.007 4.007 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.068 -8.268 -0.817 18.982 hybrid contribution 0.572 1.047 0.284 1.227 sum -16.495 -7.221 -0.533 18.014 Atomic orbital electron populations 1.22871 0.80848 1.03126 0.99963 1.88058 1.19450 1.25419 1.94963 1.21955 0.93747 0.86436 0.96958 0.89880 1.22337 1.03274 1.02926 0.94765 1.20308 0.86459 0.83935 0.79189 1.90694 1.67407 1.29333 1.52843 1.48057 1.18129 1.05417 1.62196 1.21803 0.95917 0.83729 1.00427 1.21780 0.95742 0.99717 0.98657 1.22384 0.94080 0.95555 0.98945 1.22232 0.92759 0.91427 0.88790 1.45936 1.10560 1.73311 1.03647 1.18962 0.90260 1.33703 0.92118 0.90477 1.24751 0.98333 1.01772 0.95500 1.69797 1.31357 1.52906 1.02778 0.86242 0.82853 0.79127 0.77779 1.21109 1.21602 1.21293 1.22591 0.89002 0.93444 0.94956 1.21495 0.98781 0.93391 0.99782 1.21708 0.80711 1.01780 0.96483 0.93921 0.93857 0.89250 0.90901 0.91370 0.90084 0.90309 0.90949 0.90546 0.91666 0.90983 0.95784 0.93655 0.95189 0.94147 0.89391 0.92092 0.91351 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.32 16 2 O -0.36 -4.56 9.90 -54.95 -0.54 -5.10 16 3 C 0.07 0.78 2.28 -27.88 -0.06 0.72 16 4 H 0.08 0.71 6.78 -51.93 -0.35 0.36 16 5 C -0.18 -1.64 9.11 37.16 0.34 -1.30 16 6 C 0.51 7.57 7.03 -10.99 -0.08 7.50 16 7 O -0.53 -9.98 15.94 -14.16 -0.23 -10.20 16 8 N -0.60 -8.13 2.95 -172.95 -0.51 -8.64 16 9 C 0.10 1.13 5.35 -3.91 -0.02 1.11 16 10 C -0.12 -1.55 5.10 -26.97 -0.14 -1.69 16 11 C -0.11 -1.86 0.77 -154.43 -0.12 -1.98 16 12 C 0.17 3.89 6.64 -3.16 -0.02 3.87 16 13 N -0.61 -15.05 3.53 -179.77 -0.64 -15.69 16 14 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 17 N -0.92 -27.02 11.39 55.49 0.63 -26.38 16 18 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.13 2.42 7.72 -3.15 -0.02 2.40 16 23 C -0.10 -1.63 5.21 -26.73 -0.14 -1.76 16 24 C 0.11 1.72 6.29 -3.66 -0.02 1.69 16 25 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 26 H 0.04 0.27 7.99 -51.93 -0.41 -0.15 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.49 7.99 -51.93 -0.41 0.07 16 30 H 0.08 0.72 5.26 -51.93 -0.27 0.44 16 31 H 0.08 0.65 4.69 -51.93 -0.24 0.40 16 32 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.08 0.94 8.12 -51.93 -0.42 0.51 16 34 H 0.06 0.82 7.30 -51.93 -0.38 0.44 16 35 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 36 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 39 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 40 H 0.09 1.71 8.01 -51.92 -0.42 1.30 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 43 H 0.09 1.40 7.00 -51.93 -0.36 1.04 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -33.54 335.16 -7.62 -41.16 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.91 Total: -2.51 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 0.55 Total: 5.28 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.51 Total: -50.71 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.77 Total: -15.31 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.54 -7.62 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035664590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.761 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds