Wall clock time and date at job start Tue Mar 31 2020 05:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99650 * 2 1 4 4 H 1.09003 * 109.47202 * 30.00328 * 3 2 1 5 5 C 1.52999 * 109.47306 * 270.00054 * 3 2 1 6 6 C 1.50698 * 109.47042 * 149.99871 * 3 2 1 7 7 O 1.21284 * 120.00211 * 9.73695 * 6 3 2 8 8 N 1.34778 * 120.00082 * 190.01111 * 6 3 2 9 9 C 1.46879 * 120.46423 * 4.75650 * 8 6 3 10 10 C 1.52860 * 109.01990 * 235.48919 * 9 8 6 11 11 C 1.52672 * 109.17211 * 307.81824 * 10 9 8 12 12 C 1.53483 * 113.62393 * 188.98958 * 11 10 9 13 13 N 1.47664 * 85.99032 * 137.70894 * 12 11 10 14 14 C 1.36937 * 134.45683 * 155.69880 * 13 12 11 15 15 H 1.07995 * 120.00081 * 179.97438 * 14 13 12 16 16 C 1.38814 * 119.99783 * 359.97438 * 14 13 12 17 17 N 1.31612 * 120.00427 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99699 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47004 * 59.99980 * 18 16 14 20 20 H 1.48505 * 109.46979 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47181 * 299.99695 * 18 16 14 22 22 C 1.47661 * 91.08459 * 335.68318 * 13 12 11 23 23 C 1.52670 * 113.18570 * 57.46031 * 11 10 9 24 24 C 1.46883 * 120.46548 * 185.03234 * 8 6 3 25 25 H 1.09002 * 109.46994 * 299.99913 * 1 2 3 26 26 H 1.08996 * 109.46797 * 60.00435 * 1 2 3 27 27 H 1.09003 * 109.46677 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46729 * 305.08035 * 5 3 2 29 29 H 1.08997 * 109.47165 * 65.07227 * 5 3 2 30 30 H 1.08992 * 109.47400 * 185.07597 * 5 3 2 31 31 H 1.08998 * 109.59157 * 355.31355 * 9 8 6 32 32 H 1.09003 * 109.59290 * 115.74801 * 9 8 6 33 33 H 1.08997 * 109.61357 * 187.84588 * 10 9 8 34 34 H 1.08994 * 109.44914 * 67.69156 * 10 9 8 35 35 H 1.09005 * 113.79416 * 251.98321 * 12 11 10 36 36 H 1.08999 * 113.78821 * 23.43944 * 12 11 10 37 37 H 0.97002 * 120.00666 * 180.02562 * 17 16 14 38 38 H 1.09004 * 113.78995 * 270.04755 * 22 13 12 39 39 H 1.09002 * 113.79160 * 138.58550 * 22 13 12 40 40 H 1.09007 * 109.53160 * 182.52198 * 23 11 10 41 41 H 1.08994 * 109.59375 * 62.33644 * 23 11 10 42 42 H 1.09001 * 109.58485 * 244.25786 * 24 8 6 43 43 H 1.08999 * 109.59067 * 4.68725 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7715 -1.4425 6 6 3.3386 1.2640 0.7104 7 8 3.8304 0.1980 1.0150 8 7 3.9776 2.4117 1.0123 9 6 3.3423 3.7094 0.7480 10 6 4.2706 4.5488 -0.1297 11 6 5.6568 4.5961 0.5083 12 6 6.6121 5.5881 -0.1692 13 7 7.0241 5.9652 1.1978 14 6 8.1516 6.5212 1.7406 15 1 8.2060 6.7028 2.8038 16 6 9.2247 6.8513 0.9243 17 7 9.1587 6.6295 -0.3713 18 14 10.7626 7.6105 1.6648 19 1 11.3444 6.6768 2.6623 20 1 11.7547 7.8671 0.5900 21 1 10.4114 8.8905 2.3308 22 6 5.7327 5.5028 1.7447 23 6 6.2653 3.2131 0.7271 24 6 5.3213 2.3823 1.6046 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.8088 1.0314 -1.9819 29 1 1.2495 1.8881 -1.9294 30 1 2.7424 2.7268 -1.4438 31 1 2.3952 3.5542 0.2313 32 1 3.1663 4.2288 1.6900 33 1 3.8751 5.5607 -0.2173 34 1 4.3403 4.0978 -1.1195 35 1 7.4014 5.1113 -0.7506 36 1 6.1052 6.3861 -0.7116 37 1 9.9087 6.8599 -0.9417 38 1 4.9644 6.2756 1.7711 39 1 5.8230 4.9582 2.6846 40 1 7.2302 3.3140 1.2240 41 1 6.4004 2.7171 -0.2340 42 1 5.2876 2.8062 2.6082 43 1 5.6774 1.3533 1.6520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035664590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:53 Heat of formation + Delta-G solvation = -42.524579 kcal Electronic energy + Delta-G solvation = -23403.655451 eV Core-core repulsion = 20064.144237 eV Total energy + Delta-G solvation = -3339.511214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73747 -40.33471 -38.54583 -37.09006 -34.45778 -33.28608 -32.05856 -31.34598 -28.69071 -27.64228 -26.73372 -25.70312 -24.76179 -23.76057 -22.82203 -20.79172 -18.93594 -18.68034 -18.28060 -17.72995 -16.91458 -16.65972 -16.47512 -16.09386 -15.86490 -15.55315 -15.39335 -15.11601 -14.58211 -14.21056 -14.02588 -13.84692 -13.77304 -13.41425 -13.10016 -13.05800 -12.88230 -12.78718 -12.71626 -12.58792 -12.23107 -12.11534 -12.06681 -11.63615 -11.53914 -11.23342 -11.00792 -10.85885 -10.78650 -10.43892 -9.62181 -8.84873 -7.87405 -5.18864 1.44692 1.47419 1.53379 1.53823 1.79148 2.49117 2.94573 3.33243 3.44684 3.47577 3.63644 3.86174 3.97785 4.01096 4.05674 4.18807 4.29705 4.44168 4.50732 4.59969 4.62410 4.67412 4.70816 4.75880 4.77827 4.86224 4.90315 4.91750 4.95794 5.06379 5.16383 5.19531 5.26096 5.31679 5.40423 5.51885 5.62569 5.78836 5.99775 6.11395 6.44080 6.96324 7.14010 7.65488 8.62702 9.29051 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043513 B = 0.003688 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.330457 B = 7589.953562 C = 7761.954365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.399 6.399 3 C 0.074 3.926 4 H 0.120 0.880 5 C -0.171 4.171 6 C 0.507 3.493 7 O -0.580 6.580 8 N -0.600 5.600 9 C 0.105 3.895 10 C -0.114 4.114 11 C -0.082 4.082 12 C 0.168 3.832 13 N -0.640 5.640 14 C -0.231 4.231 15 H 0.080 0.920 16 C -0.068 4.068 17 N -0.953 5.953 18 Si 0.973 3.027 19 H -0.279 1.279 20 H -0.296 1.296 21 H -0.278 1.278 22 C 0.129 3.871 23 C -0.089 4.089 24 C 0.125 3.875 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.019 0.981 37 H 0.246 0.754 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.821 -7.020 -0.512 21.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.013 3.987 4 H 0.137 0.863 5 C -0.229 4.229 6 C 0.296 3.704 7 O -0.459 6.459 8 N -0.334 5.334 9 C -0.017 4.017 10 C -0.153 4.153 11 C -0.083 4.083 12 C 0.042 3.958 13 N -0.366 5.366 14 C -0.359 4.359 15 H 0.098 0.902 16 C -0.260 4.260 17 N -0.602 5.602 18 Si 0.802 3.198 19 H -0.205 1.205 20 H -0.222 1.222 21 H -0.204 1.204 22 C 0.005 3.995 23 C -0.127 4.127 24 C 0.002 3.998 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.136 0.864 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.154 -7.615 -0.328 21.548 hybrid contribution 1.479 0.822 0.156 1.699 sum -18.675 -6.793 -0.172 19.873 Atomic orbital electron populations 1.23106 0.78556 1.04153 1.01621 1.88019 1.22039 1.26473 1.95200 1.22056 0.91989 0.86947 0.97716 0.86293 1.22339 1.04665 1.02394 0.93462 1.21151 0.87655 0.83177 0.78423 1.90668 1.69012 1.31279 1.54980 1.48124 1.17252 1.06503 1.61477 1.22040 0.96508 0.81856 1.01266 1.21757 0.92967 1.01528 0.99025 1.22087 0.95510 0.93773 0.96920 1.22184 0.93003 0.92579 0.87990 1.46317 1.11904 1.73175 1.05245 1.19359 0.91604 1.32510 0.92477 0.90209 1.25542 1.01341 1.03170 0.95986 1.69993 1.31771 1.54551 1.03919 0.85236 0.79253 0.78532 0.76828 1.20486 1.22232 1.20388 1.22789 0.86882 0.93978 0.95875 1.21349 0.97893 0.93945 0.99532 1.21445 0.81499 1.00423 0.96430 0.92568 0.91740 0.88784 0.93070 0.88457 0.89308 0.86374 0.89334 0.88739 0.90922 0.94992 0.96311 0.94492 0.92916 0.93404 0.92803 0.92695 0.90471 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.40 -9.18 9.90 -130.13 -1.29 -10.47 16 3 C 0.07 1.40 2.28 29.85 0.07 1.47 16 4 H 0.12 1.37 6.78 -2.39 -0.02 1.36 16 5 C -0.17 -2.58 9.11 71.98 0.66 -1.92 16 6 C 0.51 14.05 7.03 87.66 0.62 14.66 16 7 O -0.58 -22.03 15.94 15.81 0.25 -21.77 16 8 N -0.60 -14.76 2.95 -819.49 -2.42 -17.17 16 9 C 0.10 1.81 5.35 86.26 0.46 2.27 16 10 C -0.11 -2.56 5.10 30.44 0.16 -2.40 16 11 C -0.08 -2.72 0.77 -52.04 -0.04 -2.76 16 12 C 0.17 7.68 6.64 86.31 0.57 8.26 16 13 N -0.64 -31.92 3.53 -722.68 -2.55 -34.47 16 14 C -0.23 -12.92 10.70 84.03 0.90 -12.02 16 15 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 16 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 17 N -0.95 -57.85 11.39 21.65 0.25 -57.61 16 18 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 C 0.13 4.75 7.72 86.32 0.67 5.41 16 23 C -0.09 -3.04 5.21 30.60 0.16 -2.88 16 24 C 0.12 3.66 6.29 86.42 0.54 4.20 16 25 H 0.06 0.55 8.09 -2.39 -0.02 0.53 16 26 H 0.06 0.53 7.99 -2.39 -0.02 0.51 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 0.92 7.99 -2.39 -0.02 0.90 16 30 H 0.09 1.18 5.26 -2.39 -0.01 1.17 16 31 H 0.12 1.21 4.69 -2.39 -0.01 1.20 16 32 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 33 H 0.09 1.88 8.12 -2.39 -0.02 1.86 16 34 H 0.07 1.58 7.30 -2.39 -0.02 1.56 16 35 H 0.03 1.70 7.12 -2.38 -0.02 1.68 16 36 H 0.02 0.88 8.09 -2.39 -0.02 0.86 16 37 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.05 1.76 8.07 -2.38 -0.02 1.74 16 39 H 0.05 1.69 7.41 -2.39 -0.02 1.67 16 40 H 0.05 2.20 8.01 -2.38 -0.02 2.18 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.08 2.13 7.49 -2.39 -0.02 2.12 16 43 H 0.07 2.40 7.00 -2.39 -0.02 2.38 16 Total: -1.00 -77.07 335.16 3.71 -73.36 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.99 Total: 7.54 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 6.45 Total: 12.38 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -4.72 Total: -109.25 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.04 Total: -32.25 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -77.07 3.71 -73.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035664590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.839 kcal (2) G-P(sol) polarization free energy of solvation -77.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds