Wall clock time and date at job start Tue Mar 31 2020 05:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47602 * 2 1 4 4 C 1.50703 * 109.47155 * 239.99671 * 2 1 3 5 5 O 1.21281 * 119.99764 * 240.00217 * 4 2 1 6 6 N 1.34775 * 119.99972 * 60.00291 * 4 2 1 7 7 C 1.46501 * 119.99652 * 359.97438 * 6 4 2 8 8 C 1.46492 * 119.99882 * 179.97438 * 6 4 2 9 9 H 1.09004 * 110.88734 * 3.88436 * 8 6 4 10 10 C 1.55138 * 110.93804 * 127.95862 * 8 6 4 11 11 N 1.47421 * 104.72210 * 155.28870 * 10 8 6 12 12 C 1.36942 * 125.64804 * 155.81545 * 11 10 8 13 13 H 1.07995 * 119.99503 * 5.55584 * 12 11 10 14 14 C 1.38809 * 119.99862 * 185.54877 * 12 11 10 15 15 N 1.31622 * 120.00314 * 7.33655 * 14 12 11 16 16 Si 1.86800 * 119.99722 * 187.32640 * 14 12 11 17 17 H 1.48504 * 109.47305 * 265.01627 * 16 14 12 18 18 H 1.48504 * 109.47133 * 145.01800 * 16 14 12 19 19 H 1.48494 * 109.47107 * 25.01864 * 16 14 12 20 20 C 1.47023 * 108.70689 * 335.55346 * 11 10 8 21 21 C 1.54327 * 107.26634 * 1.28873 * 20 11 10 22 22 H 1.09006 * 110.71830 * 263.64884 * 21 20 11 23 23 O 1.42905 * 110.71936 * 140.55788 * 21 20 11 24 24 C 1.53007 * 109.46934 * 119.99757 * 2 1 3 25 25 C 1.52997 * 117.50159 * 248.74730 * 24 2 1 26 26 C 1.52996 * 117.50028 * 180.08568 * 24 2 1 27 27 H 1.08995 * 109.47336 * 300.00240 * 1 2 3 28 28 H 1.09003 * 109.46736 * 60.00142 * 1 2 3 29 29 H 1.09001 * 109.47602 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47282 * 269.99537 * 7 6 4 31 31 H 1.08997 * 109.47342 * 30.00472 * 7 6 4 32 32 H 1.09001 * 109.46860 * 149.99898 * 7 6 4 33 33 H 1.08997 * 110.49600 * 36.44665 * 10 8 6 34 34 H 1.09001 * 110.34040 * 274.05458 * 10 8 6 35 35 H 0.96997 * 119.99790 * 180.02562 * 15 14 12 36 36 H 1.08995 * 109.88572 * 120.69928 * 20 11 10 37 37 H 1.08995 * 109.88758 * 241.71748 * 20 11 10 38 38 H 0.96700 * 114.00118 * 61.45125 * 23 21 20 39 39 H 1.09004 * 115.54524 * 34.42088 * 24 2 1 40 40 H 1.09005 * 117.49302 * 0.02562 * 25 24 2 41 41 H 1.08994 * 117.50086 * 145.01692 * 25 24 2 42 42 H 1.09002 * 117.50161 * 214.98170 * 26 24 2 43 43 H 1.09004 * 117.49744 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7068 -0.2501 -2.4546 7 6 0.8641 0.9408 -2.5889 8 6 2.1956 -0.9404 -3.6506 9 1 2.7480 -1.8406 -3.3812 10 6 1.0278 -1.2675 -4.6181 11 7 1.6592 -1.3705 -5.9462 12 6 1.1657 -2.0746 -7.0121 13 1 0.1944 -2.5420 -6.9473 14 6 1.9140 -2.1872 -8.1758 15 7 3.1529 -1.7437 -8.2072 16 14 1.1628 -2.9684 -9.6972 17 1 1.5259 -4.4076 -9.7454 18 1 1.6804 -2.2865 -10.9107 19 1 -0.3150 -2.8322 -9.6453 20 6 2.9033 -0.5871 -5.9389 21 6 3.0636 0.0048 -4.5227 22 1 2.6830 1.0256 -4.4860 23 8 4.4306 -0.0384 -4.1084 24 6 2.0400 -0.7212 1.2493 25 6 2.7392 0.1231 2.3166 26 6 3.5549 -0.8263 1.4355 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.1837 0.6425 -2.6226 31 1 1.0273 1.5995 -1.7360 32 1 1.1219 1.4664 -3.5084 33 1 0.2896 -0.4656 -4.6101 34 1 0.5631 -2.2148 -4.3444 35 1 3.6756 -1.8221 -9.0205 36 1 3.7501 -1.2339 -6.1683 37 1 2.8403 0.2155 -6.6736 38 1 5.0279 0.4751 -4.6692 39 1 1.4317 -1.5595 1.5894 40 1 2.8356 1.1925 2.1288 41 1 2.5914 -0.1598 3.3587 42 1 3.9434 -1.7335 1.8984 43 1 4.1883 -0.3820 0.6676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047336876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:57 Heat of formation + Delta-G solvation = -46.169990 kcal Electronic energy + Delta-G solvation = -23426.708316 eV Core-core repulsion = 20087.039026 eV Total energy + Delta-G solvation = -3339.669291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.49064 -39.70597 -37.87870 -36.74210 -36.37990 -34.12711 -32.94158 -30.25127 -28.96572 -27.95935 -26.44989 -25.28507 -23.24415 -22.89024 -22.31558 -21.16911 -19.96340 -19.01502 -18.55151 -17.77578 -17.42019 -16.71414 -16.30149 -16.11356 -15.76988 -15.63121 -15.15716 -14.61671 -14.51173 -14.38999 -14.15201 -13.76523 -13.55307 -13.21986 -13.19197 -12.91422 -12.75946 -12.74429 -12.66094 -12.50584 -12.31311 -12.08907 -11.91787 -11.83153 -11.62771 -11.31692 -10.97105 -10.92831 -10.81070 -10.48137 -9.62262 -8.96306 -7.87835 -5.28937 1.45804 1.47436 1.56992 1.68222 1.90407 2.47358 2.94992 3.12629 3.31810 3.56932 3.60253 3.74380 3.84068 3.95389 4.03099 4.07978 4.20065 4.21794 4.35100 4.39928 4.45692 4.48833 4.61498 4.67602 4.78569 4.83621 4.84222 4.96837 5.04150 5.08925 5.10784 5.25394 5.26776 5.29176 5.41784 5.45377 5.54600 5.64926 6.12995 6.47067 6.81935 7.01452 7.24595 7.67639 8.30650 9.19724 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032109 B = 0.004057 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.825338 B = 6899.467829 C = 7191.651517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.067 4.067 3 H 0.118 0.882 4 C 0.507 3.493 5 O -0.580 6.580 6 N -0.601 5.601 7 C 0.063 3.937 8 C 0.146 3.854 9 H 0.070 0.930 10 C 0.135 3.865 11 N -0.620 5.620 12 C -0.248 4.248 13 H 0.086 0.914 14 C -0.063 4.063 15 N -0.948 5.948 16 Si 0.982 3.018 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.265 1.265 20 C 0.156 3.844 21 C 0.085 3.915 22 H 0.087 0.913 23 O -0.573 6.573 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.183 4.183 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.038 0.962 35 H 0.248 0.752 36 H 0.033 0.967 37 H 0.013 0.987 38 H 0.391 0.609 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 10.826 18.037 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 H 0.135 0.865 4 C 0.297 3.703 5 O -0.459 6.459 6 N -0.333 5.333 7 C -0.078 4.078 8 C 0.040 3.960 9 H 0.088 0.912 10 C 0.009 3.991 11 N -0.348 5.348 12 C -0.377 4.377 13 H 0.104 0.896 14 C -0.256 4.256 15 N -0.597 5.597 16 Si 0.810 3.190 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.189 1.189 20 C 0.030 3.970 21 C 0.024 3.976 22 H 0.104 0.896 23 O -0.380 6.380 24 C -0.164 4.164 25 C -0.187 4.187 26 C -0.220 4.220 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.031 0.969 38 H 0.240 0.760 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.104 0.896 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.701 9.895 18.370 21.631 hybrid contribution 0.538 -0.592 -1.874 2.038 sum -5.163 9.304 16.496 19.630 Atomic orbital electron populations 1.22025 0.90524 1.02887 1.05128 1.20915 0.99076 0.99893 0.88941 0.86458 1.21556 0.79118 0.84338 0.85274 1.90675 1.39654 1.28720 1.86898 1.47792 1.51282 1.29794 1.04396 1.22314 0.94824 0.86172 1.04451 1.21888 0.94437 0.95044 0.84652 0.91172 1.21935 0.93835 0.99360 0.83961 1.44521 1.24268 1.57314 1.08654 1.19477 1.00642 1.26265 0.91272 0.89598 1.25711 0.96390 1.01993 1.01518 1.70159 1.09038 1.52975 1.27502 0.85021 0.78204 0.77334 0.78490 1.21652 1.21769 1.18911 1.21681 0.89787 0.93452 0.92112 1.23321 0.82315 0.98457 0.93500 0.89571 1.86481 1.18236 1.76292 1.56973 1.22021 0.95356 1.02279 0.96753 1.23175 1.01559 0.97697 0.96229 1.22722 0.94214 1.02083 1.03000 0.88851 0.89592 0.93468 0.90154 0.87676 0.90906 0.92597 0.94314 0.94229 0.94897 0.96871 0.75964 0.88038 0.87267 0.87124 0.89623 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.81 71.98 0.63 -1.51 16 2 C -0.07 -1.35 2.08 -11.54 -0.02 -1.37 16 3 H 0.12 1.81 7.16 -2.39 -0.02 1.79 16 4 C 0.51 15.81 6.95 87.66 0.61 16.42 16 5 O -0.58 -24.10 14.47 -3.03 -0.04 -24.14 16 6 N -0.60 -17.90 2.91 -814.41 -2.37 -20.27 16 7 C 0.06 1.20 7.41 127.77 0.95 2.15 16 8 C 0.15 5.75 3.19 46.46 0.15 5.90 16 9 H 0.07 3.42 7.02 -2.38 -0.02 3.40 16 10 C 0.14 5.63 6.79 86.94 0.59 6.22 16 11 N -0.62 -32.20 3.39 -691.55 -2.35 -34.54 16 12 C -0.25 -13.95 10.26 84.03 0.86 -13.08 16 13 H 0.09 4.59 7.84 -2.91 -0.02 4.57 16 14 C -0.06 -3.57 5.45 84.86 0.46 -3.11 16 15 N -0.95 -57.07 10.45 21.65 0.23 -56.84 16 16 Si 0.98 45.59 29.56 68.60 2.03 47.62 16 17 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 18 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 C 0.16 7.73 5.22 86.73 0.45 8.18 16 21 C 0.08 3.28 3.88 31.78 0.12 3.40 16 22 H 0.09 2.82 6.41 -2.38 -0.02 2.80 16 23 O -0.57 -22.04 13.39 -148.98 -2.00 -24.04 16 24 C -0.15 -3.07 4.72 -10.79 -0.05 -3.12 16 25 C -0.15 -2.36 10.18 30.62 0.31 -2.05 16 26 C -0.18 -4.40 8.98 30.62 0.27 -4.12 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 1.03 4.53 -2.39 -0.01 1.02 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 1.26 6.91 -2.39 -0.02 1.25 16 31 H 0.10 1.29 6.01 -2.39 -0.01 1.27 16 32 H 0.07 1.43 6.42 -2.39 -0.02 1.41 16 33 H 0.06 2.02 7.01 -2.39 -0.02 2.01 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.03 1.91 6.80 -2.39 -0.02 1.89 16 37 H 0.01 0.69 7.97 -2.39 -0.02 0.67 16 38 H 0.39 11.61 9.11 -74.06 -0.67 10.93 16 39 H 0.10 2.19 8.11 -2.39 -0.02 2.17 16 40 H 0.11 1.36 8.05 -2.38 -0.02 1.34 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 Total: -1.00 -76.77 335.87 1.18 -75.59 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.34 Total: 22.70 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 5.34 Total: 13.91 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.49 Total: -111.65 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -2.04 Total: -48.18 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -76.77 1.18 -75.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047336876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.424 kcal (2) G-P(sol) polarization free energy of solvation -76.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds