Wall clock time and date at job start Tue Mar 31 2020 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47133 * 2 1 4 4 C 1.50697 * 109.47410 * 120.00043 * 2 1 3 5 5 O 1.21282 * 120.00173 * 110.05689 * 4 2 1 6 6 N 1.34774 * 119.99874 * 290.06102 * 4 2 1 7 7 C 1.46508 * 120.00014 * 184.11573 * 6 4 2 8 8 C 1.46500 * 120.00192 * 4.11875 * 6 4 2 9 9 H 1.09005 * 110.88373 * 4.56792 * 8 6 4 10 10 C 1.55131 * 110.94029 * 128.64623 * 8 6 4 11 11 N 1.47429 * 104.72041 * 155.28936 * 10 8 6 12 12 C 1.36941 * 125.64666 * 155.81717 * 11 10 8 13 13 H 1.07994 * 119.99638 * 6.66419 * 12 11 10 14 14 C 1.38810 * 119.99551 * 186.66965 * 12 11 10 15 15 N 1.31615 * 120.00673 * 9.88919 * 14 12 11 16 16 Si 1.86800 * 119.99571 * 189.88802 * 14 12 11 17 17 H 1.48504 * 109.47387 * 265.03362 * 16 14 12 18 18 H 1.48498 * 109.47088 * 145.03570 * 16 14 12 19 19 H 1.48503 * 109.47186 * 25.03451 * 16 14 12 20 20 C 1.47024 * 108.70609 * 335.55623 * 11 10 8 21 21 C 1.54329 * 107.26852 * 1.28205 * 20 11 10 22 22 H 1.08995 * 110.72337 * 263.65735 * 21 20 11 23 23 O 1.42897 * 110.71618 * 140.55712 * 21 20 11 24 24 C 1.53005 * 109.47456 * 240.00009 * 2 1 3 25 25 C 1.52999 * 117.49793 * 128.62004 * 24 2 1 26 26 C 1.52998 * 117.49334 * 59.99745 * 24 2 1 27 27 H 1.09004 * 109.47273 * 51.92613 * 1 2 3 28 28 H 1.09004 * 109.47107 * 171.92059 * 1 2 3 29 29 H 1.09002 * 109.47431 * 291.92502 * 1 2 3 30 30 H 1.09000 * 109.47023 * 273.66012 * 7 6 4 31 31 H 1.08996 * 109.47172 * 33.66481 * 7 6 4 32 32 H 1.09008 * 109.46867 * 153.66448 * 7 6 4 33 33 H 1.08993 * 110.49625 * 36.45154 * 10 8 6 34 34 H 1.09000 * 110.34229 * 274.05300 * 10 8 6 35 35 H 0.96998 * 120.00561 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.88477 * 120.70279 * 20 11 10 37 37 H 1.09000 * 109.88021 * 241.71783 * 20 11 10 38 38 H 0.96705 * 114.00020 * 61.46410 * 23 21 20 39 39 H 1.09000 * 115.55101 * 274.33282 * 24 2 1 40 40 H 1.09000 * 117.50289 * 0.02562 * 25 24 2 41 41 H 1.08999 * 117.49836 * 145.02269 * 25 24 2 42 42 H 1.09007 * 117.49686 * 214.97418 * 26 24 2 43 43 H 1.08997 * 117.50393 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.5741 -1.7907 1.1282 6 7 1.8795 -0.1453 2.4444 7 6 2.4471 -0.7920 3.6301 8 6 1.1458 1.1156 2.5783 9 1 0.7215 1.4218 1.6220 10 6 0.0483 1.0053 3.6692 11 7 -0.1702 2.3912 4.1222 12 6 -1.3133 2.8693 4.7052 13 1 -2.1116 2.1901 4.9653 14 6 -1.4459 4.2271 4.9617 15 7 -0.5680 5.0778 4.4741 16 14 -2.8706 4.8468 5.9989 17 1 -3.9841 5.2662 5.1104 18 1 -2.4231 6.0058 6.8124 19 1 -3.3370 3.7612 6.8984 20 6 1.0447 3.1733 3.8502 21 6 2.0543 2.2281 3.1653 22 1 2.7518 1.8154 3.8941 23 8 2.7575 2.9084 2.1239 24 6 2.0400 -0.7213 -1.2493 25 6 3.0741 0.0052 -2.1116 26 6 1.6357 -0.1495 -2.6095 27 1 -0.3634 0.6338 -0.8090 28 1 -0.3633 -1.0175 -0.1444 29 1 -0.3634 0.3837 0.9533 30 1 1.7383 -1.5228 4.0197 31 1 3.3759 -1.2946 3.3604 32 1 2.6492 -0.0397 4.3926 33 1 0.3938 0.3858 4.4968 34 1 -0.8683 0.5960 3.2446 35 1 -0.6605 6.0266 4.6536 36 1 0.8087 4.0064 3.1880 37 1 1.4606 3.5492 4.7850 38 1 3.2801 3.6624 2.4297 39 1 2.1267 -1.8045 -1.1643 40 1 3.3914 0.9968 -1.7889 41 1 3.8416 -0.6000 -2.5941 42 1 1.4569 -0.8565 -3.4197 43 1 1.0067 0.7407 -2.6145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047336877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:59 Heat of formation + Delta-G solvation = -46.501039 kcal Electronic energy + Delta-G solvation = -23695.549736 eV Core-core repulsion = 20355.866090 eV Total energy + Delta-G solvation = -3339.683646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57366 -39.66252 -38.18965 -36.67864 -36.23039 -33.68578 -33.28559 -30.27385 -28.93964 -28.15843 -26.34289 -25.64445 -23.12745 -22.55052 -22.25960 -21.49527 -19.89524 -19.03067 -18.72414 -17.74437 -17.32605 -16.78108 -16.36431 -16.09455 -15.82349 -15.44539 -15.16064 -14.58976 -14.54678 -14.34679 -14.28390 -13.81077 -13.63833 -13.19218 -13.16242 -12.99597 -12.90330 -12.81621 -12.66275 -12.60161 -12.28745 -12.07224 -11.87275 -11.84632 -11.62190 -11.25757 -10.91839 -10.91148 -10.77648 -10.68099 -9.72424 -8.92452 -7.84363 -5.25172 1.49189 1.49873 1.54354 1.59217 1.88458 2.49702 2.90950 3.12865 3.32448 3.39834 3.58590 3.66687 3.81107 3.97235 4.00130 4.13291 4.16412 4.30287 4.35110 4.41436 4.45942 4.46945 4.56382 4.60186 4.76136 4.78992 4.84219 4.86442 4.93730 5.03239 5.05590 5.24749 5.29162 5.30249 5.37061 5.44741 5.52767 5.70527 6.16155 6.30915 6.83256 7.05180 7.09195 7.71475 8.33672 9.21986 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.004653 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.481595 B = 6016.793768 C = 6244.305213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 H 0.097 0.903 4 C 0.524 3.476 5 O -0.574 6.574 6 N -0.599 5.599 7 C 0.081 3.919 8 C 0.135 3.865 9 H 0.118 0.882 10 C 0.129 3.871 11 N -0.615 5.615 12 C -0.245 4.245 13 H 0.085 0.915 14 C -0.057 4.057 15 N -0.944 5.944 16 Si 0.974 3.026 17 H -0.286 1.286 18 H -0.295 1.295 19 H -0.270 1.270 20 C 0.152 3.848 21 C 0.082 3.918 22 H 0.072 0.928 23 O -0.566 6.566 24 C -0.151 4.151 25 C -0.181 4.181 26 C -0.159 4.159 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.248 0.752 36 H 0.048 0.952 37 H 0.004 0.996 38 H 0.393 0.607 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.679 -8.120 -8.594 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.115 0.885 4 C 0.314 3.686 5 O -0.453 6.453 6 N -0.330 5.330 7 C -0.060 4.060 8 C 0.030 3.970 9 H 0.135 0.865 10 C 0.003 3.997 11 N -0.343 5.343 12 C -0.374 4.374 13 H 0.103 0.897 14 C -0.251 4.251 15 N -0.592 5.592 16 Si 0.802 3.198 17 H -0.213 1.213 18 H -0.221 1.221 19 H -0.195 1.195 20 C 0.026 3.974 21 C 0.021 3.979 22 H 0.090 0.910 23 O -0.373 6.373 24 C -0.169 4.169 25 C -0.218 4.218 26 C -0.196 4.196 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.023 0.977 38 H 0.243 0.757 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.611 -8.970 -8.925 13.842 hybrid contribution -0.326 1.175 1.310 1.790 sum 5.284 -7.795 -7.615 12.111 Atomic orbital electron populations 1.21914 0.91663 1.03378 1.03265 1.20842 0.98101 0.99828 0.90987 0.88510 1.20925 0.77741 0.84978 0.84966 1.90611 1.45471 1.22507 1.86758 1.47776 1.54308 1.23255 1.07628 1.21711 0.99100 0.98115 0.87121 1.22522 0.91367 0.81945 1.01157 0.86464 1.21979 0.96237 0.87202 0.94298 1.44455 1.12541 1.05791 1.71506 1.19405 0.94491 0.91720 1.31743 0.89747 1.25574 1.01278 0.95967 1.02244 1.70107 1.38687 1.01599 1.48797 0.85139 0.78627 0.77613 0.78388 1.21338 1.22135 1.19453 1.21743 0.85427 0.93453 0.96821 1.23274 0.92837 0.92533 0.89280 0.90987 1.86378 1.66446 1.48993 1.35510 1.21953 1.05426 0.99085 0.90448 1.23090 0.93190 1.01831 1.03699 1.23044 0.97412 1.03386 0.95755 0.89663 0.91554 0.92380 0.91883 0.91018 0.90148 0.94101 0.92835 0.94223 0.93401 0.97746 0.75675 0.88132 0.88911 0.88115 0.87275 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.40 71.98 0.60 -2.94 16 2 C -0.08 -2.06 2.03 -11.54 -0.02 -2.08 16 3 H 0.10 2.71 7.31 -2.39 -0.02 2.69 16 4 C 0.52 16.67 6.97 87.66 0.61 17.29 16 5 O -0.57 -21.01 15.31 -3.04 -0.05 -21.06 16 6 N -0.60 -18.28 2.91 -814.36 -2.37 -20.65 16 7 C 0.08 2.19 8.92 127.77 1.14 3.33 16 8 C 0.14 4.49 2.11 46.46 0.10 4.59 16 9 H 0.12 3.97 4.32 -2.38 -0.01 3.96 16 10 C 0.13 4.87 6.74 86.93 0.59 5.46 16 11 N -0.62 -29.33 3.39 -691.53 -2.35 -31.68 16 12 C -0.24 -12.92 10.25 84.03 0.86 -12.06 16 13 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 14 C -0.06 -3.05 5.43 84.86 0.46 -2.59 16 15 N -0.94 -53.55 10.54 21.65 0.23 -53.32 16 16 Si 0.97 43.60 29.56 68.60 2.03 45.63 16 17 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 C 0.15 6.85 5.26 86.73 0.46 7.31 16 21 C 0.08 2.82 3.87 31.79 0.12 2.95 16 22 H 0.07 2.30 6.50 -2.39 -0.02 2.29 16 23 O -0.57 -17.93 13.39 -148.98 -2.00 -19.93 16 24 C -0.15 -3.66 4.84 -10.79 -0.05 -3.71 16 25 C -0.18 -3.82 10.18 30.60 0.31 -3.50 16 26 C -0.16 -2.97 9.82 30.59 0.30 -2.67 16 27 H 0.08 1.79 7.59 -2.39 -0.02 1.77 16 28 H 0.07 1.55 8.13 -2.38 -0.02 1.53 16 29 H 0.06 1.59 5.36 -2.39 -0.01 1.58 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.92 7.60 -2.39 -0.02 1.90 16 32 H 0.08 2.02 6.42 -2.38 -0.02 2.00 16 33 H 0.04 1.48 6.95 -2.39 -0.02 1.46 16 34 H 0.05 1.98 7.99 -2.39 -0.02 1.97 16 35 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 36 H 0.05 2.49 6.69 -2.39 -0.02 2.47 16 37 H 0.00 0.22 8.07 -2.39 -0.02 0.20 16 38 H 0.39 9.63 9.11 -74.05 -0.67 8.95 16 39 H 0.10 2.76 7.35 -2.39 -0.02 2.74 16 40 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 41 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.10 1.79 7.71 -2.39 -0.02 1.77 16 Total: -1.00 -64.73 336.97 1.32 -63.41 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.34 Total: 26.23 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 5.48 Total: 11.36 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -4.49 Total: -105.65 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -2.04 Total: -40.99 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -64.73 1.32 -63.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047336877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.909 kcal (2) G-P(sol) polarization free energy of solvation -64.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds