Wall clock time and date at job start Tue Mar 31 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00252 * 2 1 4 4 H 1.08995 * 109.47145 * 29.99811 * 3 2 1 5 5 C 1.53002 * 109.46648 * 269.99650 * 3 2 1 6 6 C 1.50702 * 109.47086 * 150.00081 * 3 2 1 7 7 O 1.21273 * 120.00317 * 4.99206 * 6 3 2 8 8 N 1.34782 * 119.99510 * 185.00088 * 6 3 2 9 9 C 1.46528 * 121.39675 * 0.72571 * 8 6 3 10 10 C 1.52716 * 111.16670 * 127.51431 * 9 8 6 11 11 C 1.53870 * 111.52168 * 48.10071 * 10 9 8 12 12 C 1.51076 * 107.34398 * 303.07047 * 11 10 9 13 13 H 1.08994 * 108.73884 * 308.53541 * 12 11 10 14 14 C 1.45725 * 122.22356 * 179.97438 * 8 6 3 15 15 H 1.09002 * 111.07022 * 119.45366 * 14 8 6 16 16 C 1.53436 * 117.00429 * 350.38160 * 14 8 6 17 17 C 1.55471 * 101.67013 * 207.01960 * 16 14 8 18 18 N 1.45029 * 119.18990 * 183.88795 * 12 11 10 19 19 C 1.36932 * 126.55758 * 28.79065 * 18 12 11 20 20 H 1.08006 * 120.00335 * 359.97438 * 19 18 12 21 21 C 1.38812 * 120.00014 * 179.97438 * 19 18 12 22 22 N 1.31626 * 120.00006 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00486 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46608 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47055 * 119.99989 * 23 21 19 26 26 H 1.48491 * 109.47500 * 240.00165 * 23 21 19 27 27 H 1.08998 * 109.47065 * 300.00536 * 1 2 3 28 28 H 1.09007 * 109.46826 * 59.99834 * 1 2 3 29 29 H 1.08993 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46908 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47080 * 299.99745 * 5 3 2 32 32 H 1.08997 * 109.47096 * 59.99970 * 5 3 2 33 33 H 1.09004 * 109.44750 * 6.85254 * 9 8 6 34 34 H 1.08997 * 108.71516 * 247.70630 * 9 8 6 35 35 H 1.08999 * 109.07039 * 287.57468 * 10 9 8 36 36 H 1.08996 * 109.01146 * 168.59071 * 10 9 8 37 37 H 1.09001 * 109.87815 * 183.60970 * 11 10 9 38 38 H 1.08998 * 109.87963 * 62.53262 * 11 10 9 39 39 H 1.08992 * 110.98882 * 325.11339 * 16 14 8 40 40 H 1.09001 * 110.98701 * 88.92749 * 16 14 8 41 41 H 1.09000 * 109.96060 * 263.22201 * 17 16 14 42 42 H 1.08999 * 109.96213 * 141.98144 * 17 16 14 43 43 H 0.96995 * 120.00429 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2178 1.7712 -1.4426 6 6 3.3387 1.2638 0.7104 7 8 3.7896 0.2045 1.0915 8 7 4.0255 2.4040 0.9224 9 6 3.5020 3.7022 0.4891 10 6 3.4964 4.7063 1.6397 11 6 4.8440 4.7214 2.3823 12 6 5.1106 3.3132 2.8602 13 1 4.2348 2.9553 3.4013 14 6 5.3133 2.4201 1.6041 15 1 6.0948 2.8169 0.9562 16 6 5.7615 1.1162 2.2773 17 6 6.6844 1.6480 3.4098 18 7 6.2841 3.0519 3.6714 19 6 6.9031 3.9324 4.5179 20 1 6.5188 4.9357 4.6289 21 6 8.0244 3.5356 5.2334 22 7 8.4925 2.3128 5.0986 23 14 8.8694 4.7370 6.3876 24 1 8.1525 6.0372 6.3601 25 1 8.8520 4.1919 7.7689 26 1 10.2748 4.9368 5.9520 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.6616 2.7668 -1.4426 31 1 2.8830 1.0772 -1.9563 32 1 1.2570 1.8012 -1.9564 33 1 2.4847 3.5777 0.1179 34 1 4.1321 4.0827 -0.3148 35 1 2.7061 4.4396 2.3414 36 1 3.2980 5.7014 1.2416 37 1 4.7897 5.3982 3.2350 38 1 5.6368 5.0395 1.7053 39 1 4.9090 0.5766 2.6896 40 1 6.3191 0.4892 1.5815 41 1 7.7255 1.6124 3.0889 42 1 6.5516 1.0487 4.3104 43 1 9.2763 2.0356 5.5983 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049358885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:00 Heat of formation + Delta-G solvation = -36.872388 kcal Electronic energy + Delta-G solvation = -23922.822475 eV Core-core repulsion = 20583.556359 eV Total energy + Delta-G solvation = -3339.266116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.56018 -38.51007 -37.05213 -35.58091 -32.70243 -32.51436 -31.27359 -28.83570 -28.19383 -26.96997 -25.24252 -24.45396 -23.17953 -21.54334 -20.88674 -19.64359 -18.95958 -17.17235 -16.67245 -16.40640 -15.66783 -15.19784 -14.92234 -14.84187 -14.60166 -14.21098 -13.93127 -13.50469 -13.30200 -13.13838 -12.77900 -12.44200 -12.39085 -12.28045 -11.94803 -11.74466 -11.53674 -11.31310 -11.06900 -10.84932 -10.68424 -10.51318 -10.38914 -10.06655 -9.98858 -9.92985 -9.81916 -9.59975 -8.88174 -8.55933 -8.20751 -6.80506 -5.67947 -3.02342 2.81463 2.88691 3.41276 3.46066 3.49081 3.81643 4.45103 4.51083 4.66370 4.81230 4.86403 5.04759 5.08169 5.17939 5.20927 5.32197 5.38400 5.44277 5.47333 5.49399 5.59017 5.63075 5.76557 5.88094 5.90510 6.00213 6.09760 6.26737 6.29524 6.39650 6.57414 6.72865 6.75950 6.91875 6.95821 7.21056 7.60837 7.66847 7.72603 7.86891 8.27282 8.46023 9.21473 9.85337 10.53753 11.44091 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031197 B = 0.004616 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.313249 B = 6064.601982 C = 6587.925556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.069 3.931 4 H 0.083 0.917 5 C -0.176 4.176 6 C 0.514 3.486 7 O -0.510 6.510 8 N -0.596 5.596 9 C 0.104 3.896 10 C -0.131 4.131 11 C -0.115 4.115 12 C 0.158 3.842 13 H 0.017 0.983 14 C 0.119 3.881 15 H 0.080 0.920 16 C -0.129 4.129 17 C 0.172 3.828 18 N -0.593 5.593 19 C -0.226 4.226 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.039 0.961 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.309 2.695 -13.116 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C 0.007 3.993 4 H 0.100 0.900 5 C -0.233 4.233 6 C 0.300 3.700 7 O -0.384 6.384 8 N -0.331 5.331 9 C -0.019 4.019 10 C -0.170 4.170 11 C -0.154 4.154 12 C 0.048 3.952 13 H 0.034 0.966 14 C 0.015 3.985 15 H 0.098 0.902 16 C -0.168 4.168 17 C 0.048 3.952 18 N -0.318 5.318 19 C -0.354 4.354 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.766 1.917 -12.749 19.602 hybrid contribution 0.217 0.960 0.616 1.161 sum -14.549 2.877 -12.134 19.162 Atomic orbital electron populations 1.22862 0.80948 1.03111 0.99852 1.88059 1.19364 1.25312 1.94912 1.21965 0.94122 0.86513 0.96661 0.89976 1.22378 1.03211 1.02593 0.95166 1.20233 0.85877 0.83927 0.79943 1.90718 1.68732 1.29543 1.49447 1.47628 1.21043 1.05747 1.58641 1.21664 0.99235 0.83732 0.97245 1.21933 0.99152 0.98411 0.97479 1.21421 0.95432 0.98770 0.99760 1.20765 0.91588 0.92737 0.90088 0.96559 1.22381 0.82922 0.99859 0.93368 0.90201 1.22949 1.00648 0.94829 0.98362 1.21735 0.95995 0.83830 0.93667 1.44080 1.29894 1.10162 1.47625 1.19032 1.07080 0.93204 1.16120 0.90314 1.24809 0.98489 0.96725 1.00352 1.69962 1.25388 1.16539 1.44740 0.86077 0.79345 0.79965 0.80555 1.20557 1.21798 1.21786 0.93899 0.94030 0.89248 0.90351 0.91030 0.91481 0.90162 0.91471 0.91857 0.90883 0.91435 0.91717 0.90098 0.92022 0.92515 0.94233 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.36 -4.94 9.89 -55.09 -0.54 -5.49 16 3 C 0.07 0.84 2.31 -27.88 -0.06 0.78 16 4 H 0.08 0.81 7.08 -51.93 -0.37 0.44 16 5 C -0.18 -1.63 9.13 37.16 0.34 -1.29 16 6 C 0.51 8.52 7.10 -10.98 -0.08 8.44 16 7 O -0.51 -10.68 13.41 -14.30 -0.19 -10.87 16 8 N -0.60 -9.30 2.89 -165.08 -0.48 -9.78 16 9 C 0.10 1.17 4.90 -4.17 -0.02 1.15 16 10 C -0.13 -1.58 5.93 -26.42 -0.16 -1.74 16 11 C -0.12 -1.93 5.45 -27.25 -0.15 -2.08 16 12 C 0.16 3.29 2.57 -68.38 -0.18 3.12 16 13 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 14 C 0.12 2.28 3.32 -66.82 -0.22 2.06 16 15 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 16 C -0.13 -2.83 5.05 -25.19 -0.13 -2.95 16 17 C 0.17 4.42 5.47 -1.73 -0.01 4.41 16 18 N -0.59 -15.29 3.35 -163.37 -0.55 -15.84 16 19 C -0.23 -6.25 9.94 -15.06 -0.15 -6.40 16 20 H 0.08 2.08 7.31 -52.48 -0.38 1.70 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -27.40 10.46 55.49 0.58 -26.82 16 23 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 28 H 0.04 0.28 7.87 -51.93 -0.41 -0.12 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.61 5.50 -51.93 -0.29 0.32 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 33 H 0.08 0.67 4.81 -51.93 -0.25 0.42 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.19 7.70 -51.93 -0.40 0.79 16 38 H 0.06 1.09 8.12 -51.93 -0.42 0.66 16 39 H 0.08 1.87 6.26 -51.93 -0.33 1.55 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.58 7.19 -51.93 -0.37 1.20 16 42 H 0.04 1.11 7.81 -51.93 -0.41 0.71 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 327.28 15.07 4.93 4.93 Total: -1.00 -33.72 327.28 -8.05 -41.77 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.96 Total: -1.57 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 0.18 Total: 6.54 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.44 Total: -52.44 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.74 Total: -16.35 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.72 -8.05 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049358885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.899 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds