Wall clock time and date at job start Tue Mar 31 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00252 * 2 1 4 4 H 1.08995 * 109.47145 * 29.99811 * 3 2 1 5 5 C 1.53002 * 109.46648 * 269.99650 * 3 2 1 6 6 C 1.50702 * 109.47086 * 150.00081 * 3 2 1 7 7 O 1.21273 * 120.00317 * 4.99206 * 6 3 2 8 8 N 1.34782 * 119.99510 * 185.00088 * 6 3 2 9 9 C 1.46528 * 121.39675 * 0.72571 * 8 6 3 10 10 C 1.52716 * 111.16670 * 127.51431 * 9 8 6 11 11 C 1.53870 * 111.52168 * 48.10071 * 10 9 8 12 12 C 1.51076 * 107.34398 * 303.07047 * 11 10 9 13 13 H 1.08994 * 108.73884 * 308.53541 * 12 11 10 14 14 C 1.45725 * 122.22356 * 179.97438 * 8 6 3 15 15 H 1.09002 * 111.07022 * 119.45366 * 14 8 6 16 16 C 1.53436 * 117.00429 * 350.38160 * 14 8 6 17 17 C 1.55471 * 101.67013 * 207.01960 * 16 14 8 18 18 N 1.45029 * 119.18990 * 183.88795 * 12 11 10 19 19 C 1.36932 * 126.55758 * 28.79065 * 18 12 11 20 20 H 1.08006 * 120.00335 * 359.97438 * 19 18 12 21 21 C 1.38812 * 120.00014 * 179.97438 * 19 18 12 22 22 N 1.31626 * 120.00006 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00486 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46608 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47055 * 119.99989 * 23 21 19 26 26 H 1.48491 * 109.47500 * 240.00165 * 23 21 19 27 27 H 1.08998 * 109.47065 * 300.00536 * 1 2 3 28 28 H 1.09007 * 109.46826 * 59.99834 * 1 2 3 29 29 H 1.08993 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46908 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47080 * 299.99745 * 5 3 2 32 32 H 1.08997 * 109.47096 * 59.99970 * 5 3 2 33 33 H 1.09004 * 109.44750 * 6.85254 * 9 8 6 34 34 H 1.08997 * 108.71516 * 247.70630 * 9 8 6 35 35 H 1.08999 * 109.07039 * 287.57468 * 10 9 8 36 36 H 1.08996 * 109.01146 * 168.59071 * 10 9 8 37 37 H 1.09001 * 109.87815 * 183.60970 * 11 10 9 38 38 H 1.08998 * 109.87963 * 62.53262 * 11 10 9 39 39 H 1.08992 * 110.98882 * 325.11339 * 16 14 8 40 40 H 1.09001 * 110.98701 * 88.92749 * 16 14 8 41 41 H 1.09000 * 109.96060 * 263.22201 * 17 16 14 42 42 H 1.08999 * 109.96213 * 141.98144 * 17 16 14 43 43 H 0.96995 * 120.00429 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2178 1.7712 -1.4426 6 6 3.3387 1.2638 0.7104 7 8 3.7896 0.2045 1.0915 8 7 4.0255 2.4040 0.9224 9 6 3.5020 3.7022 0.4891 10 6 3.4964 4.7063 1.6397 11 6 4.8440 4.7214 2.3823 12 6 5.1106 3.3132 2.8602 13 1 4.2348 2.9553 3.4013 14 6 5.3133 2.4201 1.6041 15 1 6.0948 2.8169 0.9562 16 6 5.7615 1.1162 2.2773 17 6 6.6844 1.6480 3.4098 18 7 6.2841 3.0519 3.6714 19 6 6.9031 3.9324 4.5179 20 1 6.5188 4.9357 4.6289 21 6 8.0244 3.5356 5.2334 22 7 8.4925 2.3128 5.0986 23 14 8.8694 4.7370 6.3876 24 1 8.1525 6.0372 6.3601 25 1 8.8520 4.1919 7.7689 26 1 10.2748 4.9368 5.9520 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.6616 2.7668 -1.4426 31 1 2.8830 1.0772 -1.9563 32 1 1.2570 1.8012 -1.9564 33 1 2.4847 3.5777 0.1179 34 1 4.1321 4.0827 -0.3148 35 1 2.7061 4.4396 2.3414 36 1 3.2980 5.7014 1.2416 37 1 4.7897 5.3982 3.2350 38 1 5.6368 5.0395 1.7053 39 1 4.9090 0.5766 2.6896 40 1 6.3191 0.4892 1.5815 41 1 7.7255 1.6124 3.0889 42 1 6.5516 1.0487 4.3104 43 1 9.2763 2.0356 5.5983 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049358885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:00 Heat of formation + Delta-G solvation = -59.873995 kcal Electronic energy + Delta-G solvation = -23923.819900 eV Core-core repulsion = 20583.556359 eV Total energy + Delta-G solvation = -3340.263541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.88008 -39.77590 -38.27538 -37.08015 -34.38376 -33.98955 -32.49534 -30.63605 -29.66008 -27.68236 -26.62599 -26.26845 -24.31882 -22.85813 -22.50286 -21.39528 -20.23150 -18.65049 -17.97108 -17.61479 -17.12732 -16.60903 -16.31940 -16.09077 -15.94993 -15.57286 -15.37762 -14.97576 -14.49421 -14.31574 -14.13810 -13.86713 -13.65633 -13.48143 -13.14368 -13.11646 -12.83683 -12.76233 -12.69113 -12.28476 -12.04296 -11.99707 -11.88910 -11.77281 -11.71477 -11.56950 -11.41812 -10.84964 -10.75009 -10.19349 -9.56243 -8.92344 -7.84640 -5.22078 1.45727 1.47471 1.57553 1.59134 1.75770 2.49885 2.91531 3.33665 3.34335 3.54216 3.86509 3.88842 3.99551 4.00854 4.06314 4.11302 4.24151 4.33956 4.48395 4.54628 4.57164 4.57697 4.64170 4.72834 4.75095 4.84442 4.87970 4.92023 5.02489 5.09257 5.16299 5.23595 5.30289 5.43547 5.48255 5.57133 5.60534 5.70625 6.12180 6.17110 6.51629 7.04245 7.21151 7.74562 8.44920 9.27553 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031197 B = 0.004616 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.313249 B = 6064.601982 C = 6587.925556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.399 6.399 3 C 0.075 3.925 4 H 0.114 0.886 5 C -0.169 4.169 6 C 0.502 3.498 7 O -0.568 6.568 8 N -0.594 5.594 9 C 0.095 3.905 10 C -0.122 4.122 11 C -0.112 4.112 12 C 0.152 3.848 13 H -0.003 1.003 14 C 0.133 3.867 15 H 0.083 0.917 16 C -0.113 4.113 17 C 0.183 3.817 18 N -0.612 5.612 19 C -0.232 4.232 20 H 0.091 0.909 21 C -0.071 4.071 22 N -0.956 5.956 23 Si 0.980 3.020 24 H -0.260 1.260 25 H -0.297 1.297 26 H -0.292 1.292 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.027 0.973 42 H -0.002 1.002 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.980 5.670 -15.291 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C 0.014 3.986 4 H 0.131 0.869 5 C -0.227 4.227 6 C 0.291 3.709 7 O -0.446 6.446 8 N -0.327 5.327 9 C -0.026 4.026 10 C -0.160 4.160 11 C -0.150 4.150 12 C 0.044 3.956 13 H 0.014 0.986 14 C 0.028 3.972 15 H 0.101 0.899 16 C -0.152 4.152 17 C 0.058 3.942 18 N -0.337 5.337 19 C -0.361 4.361 20 H 0.109 0.891 21 C -0.263 4.263 22 N -0.606 5.606 23 Si 0.809 3.191 24 H -0.184 1.184 25 H -0.224 1.224 26 H -0.219 1.219 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.016 0.984 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.502 4.952 -14.964 23.553 hybrid contribution 0.980 -0.016 1.306 1.633 sum -16.522 4.935 -13.658 21.997 Atomic orbital electron populations 1.23091 0.78607 1.04107 1.01534 1.88016 1.21995 1.26553 1.95202 1.22053 0.91548 0.86854 0.98149 0.86850 1.22385 1.04614 1.02875 0.92788 1.21276 0.87328 0.83101 0.79213 1.90689 1.70385 1.31693 1.51869 1.47711 1.19488 1.07746 1.57772 1.22113 1.01939 0.81044 0.97455 1.21925 0.95682 1.01062 0.97335 1.21415 0.98611 0.95034 0.99945 1.20961 0.88658 0.96216 0.89784 0.98578 1.21963 0.85247 0.96931 0.93070 0.89915 1.22653 0.99135 0.96173 0.97228 1.21414 0.95356 0.84250 0.93198 1.44343 1.31097 1.09813 1.48434 1.19478 1.06864 0.93834 1.15901 0.89085 1.25726 0.99633 0.98472 1.02478 1.70197 1.25754 1.18635 1.45966 0.84975 0.77974 0.78492 0.77688 1.18358 1.22402 1.21903 0.93111 0.91278 0.88854 0.88289 0.92989 0.88559 0.86033 0.89089 0.91866 0.86659 0.92482 0.91541 0.91621 0.91987 0.95467 0.98392 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.56 16 2 O -0.40 -10.27 9.89 -129.99 -1.28 -11.55 16 3 C 0.07 1.59 2.31 29.85 0.07 1.66 16 4 H 0.11 1.67 7.08 -2.39 -0.02 1.65 16 5 C -0.17 -2.38 9.13 71.98 0.66 -1.72 16 6 C 0.50 16.05 7.10 87.66 0.62 16.68 16 7 O -0.57 -24.43 13.41 15.98 0.21 -24.21 16 8 N -0.59 -17.34 2.89 -794.59 -2.29 -19.63 16 9 C 0.10 1.68 4.90 86.28 0.42 2.10 16 10 C -0.12 -2.38 5.93 30.79 0.18 -2.20 16 11 C -0.11 -3.51 5.45 30.26 0.16 -3.34 16 12 C 0.15 6.38 2.57 45.48 0.12 6.49 16 13 H 0.00 -0.15 8.05 -2.39 -0.02 -0.17 16 14 C 0.13 5.12 3.32 46.13 0.15 5.27 16 15 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 16 C -0.11 -5.24 5.05 31.59 0.16 -5.08 16 17 C 0.18 10.08 5.47 86.88 0.47 10.56 16 18 N -0.61 -32.74 3.35 -670.79 -2.25 -34.99 16 19 C -0.23 -13.10 9.94 84.03 0.84 -12.26 16 20 H 0.09 4.79 7.31 -2.91 -0.02 4.77 16 21 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 22 N -0.96 -59.95 10.46 21.65 0.23 -59.72 16 23 Si 0.98 46.39 29.55 68.60 2.03 48.41 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 27 H 0.05 0.67 8.08 -2.39 -0.02 0.65 16 28 H 0.07 0.65 7.87 -2.38 -0.02 0.63 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.10 0.96 5.50 -2.38 -0.01 0.95 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.83 7.87 -2.39 -0.02 0.82 16 33 H 0.12 1.21 4.81 -2.38 -0.01 1.20 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.90 7.70 -2.39 -0.02 1.88 16 38 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 39 H 0.07 3.25 6.26 -2.39 -0.01 3.23 16 40 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.03 1.63 7.19 -2.39 -0.02 1.61 16 42 H 0.00 -0.14 7.81 -2.39 -0.02 -0.15 16 43 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -80.58 327.28 3.18 -77.40 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.99 Total: 8.23 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 5.55 Total: 16.07 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -4.31 Total: -114.35 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.07 Total: -35.77 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -80.58 3.18 -77.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049358885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.522 kcal (2) G-P(sol) polarization free energy of solvation -80.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds