Wall clock time and date at job start Tue Mar 31 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00176 * 2 1 4 4 H 1.09004 * 109.46823 * 30.00190 * 3 2 1 5 5 C 1.52995 * 109.47388 * 270.00429 * 3 2 1 6 6 C 1.50703 * 109.47431 * 150.00108 * 3 2 1 7 7 O 1.21283 * 119.99599 * 13.93977 * 6 3 2 8 8 N 1.34772 * 120.00041 * 193.94293 * 6 3 2 9 9 C 1.46802 * 119.57172 * 174.89566 * 8 6 3 10 10 C 1.53469 * 107.59848 * 232.01845 * 9 8 6 11 11 C 1.52739 * 108.43716 * 301.92341 * 10 9 8 12 12 C 1.53016 * 110.79880 * 63.77969 * 11 10 9 13 13 H 1.08994 * 111.38480 * 69.70496 * 12 11 10 14 14 C 1.45925 * 118.89345 * 355.46033 * 8 6 3 15 15 H 1.08996 * 111.00229 * 12.45293 * 14 8 6 16 16 C 1.54416 * 110.92504 * 248.91009 * 14 8 6 17 17 C 1.54539 * 102.36620 * 204.05491 * 16 14 8 18 18 N 1.47129 * 107.26314 * 22.03033 * 17 16 14 19 19 C 1.36932 * 125.76273 * 182.47899 * 18 17 16 20 20 H 1.08001 * 119.99397 * 184.54910 * 19 18 17 21 21 C 1.38811 * 120.00631 * 4.55151 * 19 18 17 22 22 N 1.31617 * 119.99449 * 354.38237 * 21 19 18 23 23 Si 1.86794 * 120.00362 * 174.38490 * 21 19 18 24 24 H 1.48500 * 109.47269 * 275.00616 * 23 21 19 25 25 H 1.48505 * 109.47101 * 35.00083 * 23 21 19 26 26 H 1.48503 * 109.47400 * 155.00032 * 23 21 19 27 27 H 1.08997 * 109.46959 * 300.00013 * 1 2 3 28 28 H 1.09003 * 109.46855 * 59.99858 * 1 2 3 29 29 H 1.08996 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47529 * 64.53146 * 5 3 2 31 31 H 1.09003 * 109.47476 * 184.53518 * 5 3 2 32 32 H 1.09007 * 109.46911 * 304.53230 * 5 3 2 33 33 H 1.08998 * 109.82948 * 112.49586 * 9 8 6 34 34 H 1.08993 * 109.89029 * 351.57417 * 9 8 6 35 35 H 1.09002 * 109.63936 * 182.24512 * 10 9 8 36 36 H 1.08995 * 109.64410 * 61.61336 * 10 9 8 37 37 H 1.09004 * 109.21538 * 303.44054 * 11 10 9 38 38 H 1.08999 * 109.17474 * 184.09315 * 11 10 9 39 39 H 1.08997 * 110.81153 * 322.50776 * 16 14 8 40 40 H 1.09000 * 110.81126 * 86.02298 * 16 14 8 41 41 H 1.09000 * 109.99586 * 262.55361 * 17 16 14 42 42 H 1.09002 * 109.76704 * 141.37567 * 17 16 14 43 43 H 0.97006 * 119.99759 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 3.3387 1.2639 0.7104 7 8 3.8667 0.1979 0.9470 8 7 3.9399 2.4111 1.0828 9 6 5.1764 2.3580 1.8723 10 6 4.9784 3.2504 3.1051 11 6 4.6488 4.6641 2.6302 12 6 3.3216 4.6859 1.8688 13 1 2.4778 4.5102 2.5360 14 6 3.3339 3.6817 0.6985 15 1 2.3211 3.5339 0.3236 16 6 4.2026 4.4130 -0.3480 17 6 3.7859 5.8881 -0.1514 18 7 3.2225 6.0060 1.2026 19 6 2.6911 7.1420 1.7521 20 1 2.3690 7.1435 2.7830 21 6 2.5661 8.2917 0.9844 22 7 3.0583 8.3247 -0.2359 23 14 1.6995 9.7918 1.6829 24 1 0.2356 9.6617 1.4701 25 1 1.9810 9.8935 3.1375 26 1 2.1930 11.0129 0.9967 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.2499 1.8789 -1.9323 31 1 2.7340 2.7313 -1.4435 32 1 2.8169 1.0359 -1.9793 33 1 6.0111 2.7288 1.2775 34 1 5.3725 1.3326 2.1857 35 1 5.8940 3.2667 3.6964 36 1 4.1561 2.8652 3.7080 37 1 5.4445 5.0168 1.9740 38 1 4.5774 5.3245 3.4943 39 1 5.2627 4.2744 -0.1362 40 1 3.9606 4.0758 -1.3559 41 1 3.0344 6.1648 -0.8910 42 1 4.6589 6.5337 -0.2472 43 1 2.9713 9.1283 -0.7723 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049358887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:03 Heat of formation + Delta-G solvation = -44.811323 kcal Electronic energy + Delta-G solvation = -24098.592303 eV Core-core repulsion = 20758.981928 eV Total energy + Delta-G solvation = -3339.610374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.57065 -38.50210 -37.32675 -34.96028 -33.31233 -32.12613 -31.06044 -29.11658 -28.26082 -26.86151 -25.17336 -24.42804 -23.37535 -21.82862 -20.50491 -19.94885 -18.26509 -17.52857 -17.07640 -16.27175 -15.77741 -15.32578 -14.92357 -14.73583 -14.60202 -14.21202 -13.71839 -13.47823 -13.38267 -12.99423 -12.85176 -12.50486 -12.26562 -12.08550 -11.99017 -11.82886 -11.36396 -11.14572 -11.03916 -10.99898 -10.86463 -10.68000 -10.49735 -10.16053 -10.10572 -9.97138 -9.80165 -9.71127 -9.26844 -8.67645 -8.31865 -6.95161 -5.80516 -3.14232 2.72628 2.90463 3.34800 3.40388 3.41812 3.86778 4.39623 4.55714 4.83924 4.98957 5.07612 5.16589 5.23648 5.25300 5.28513 5.31265 5.46120 5.47348 5.49800 5.55151 5.62484 5.64397 5.69665 5.83078 6.02895 6.08889 6.09658 6.15847 6.22035 6.27977 6.43581 6.47349 6.68996 6.80982 6.96464 7.01914 7.45034 7.50560 7.58165 7.73240 8.14381 8.34099 9.11750 9.71400 10.36832 11.30865 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.005382 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.320712 B = 5201.736871 C = 5837.073976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.069 3.931 4 H 0.086 0.914 5 C -0.179 4.179 6 C 0.515 3.485 7 O -0.533 6.533 8 N -0.592 5.592 9 C 0.116 3.884 10 C -0.133 4.133 11 C -0.129 4.129 12 C 0.154 3.846 13 H 0.060 0.940 14 C 0.120 3.880 15 H 0.097 0.903 16 C -0.156 4.156 17 C 0.178 3.822 18 N -0.598 5.598 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.288 1.288 25 H -0.282 1.282 26 H -0.291 1.291 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.040 0.960 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 -11.278 0.288 11.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.281 6.281 3 C 0.008 3.992 4 H 0.104 0.896 5 C -0.236 4.236 6 C 0.302 3.698 7 O -0.410 6.410 8 N -0.326 5.326 9 C -0.006 4.006 10 C -0.172 4.172 11 C -0.169 4.169 12 C 0.046 3.954 13 H 0.078 0.922 14 C 0.015 3.985 15 H 0.115 0.885 16 C -0.195 4.195 17 C 0.053 3.947 18 N -0.323 5.323 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.215 1.215 25 H -0.208 1.208 26 H -0.217 1.217 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.855 -11.748 0.330 11.784 hybrid contribution -0.672 1.284 0.286 1.477 sum -1.528 -10.464 0.616 10.593 Atomic orbital electron populations 1.22868 0.80841 1.02928 1.00215 1.88014 1.19482 1.25577 1.95017 1.21987 0.93732 0.86322 0.97150 0.89589 1.22411 1.03519 1.03024 0.94667 1.20374 0.86463 0.83931 0.79017 1.90659 1.65571 1.29466 1.55265 1.47824 1.25631 1.05565 1.53551 1.21649 0.85675 1.01275 0.91951 1.21938 1.01607 0.96788 0.96824 1.22094 0.99690 0.94439 1.00643 1.21368 0.95490 0.86263 0.92313 0.92236 1.22203 0.96961 0.82273 0.97031 0.88501 1.23237 0.99464 0.99262 0.97507 1.21216 0.97852 0.88267 0.87335 1.44716 1.71019 1.04401 1.12174 1.19005 1.33626 0.87697 0.95393 0.90427 1.24798 1.00890 0.98094 0.96293 1.69948 1.49250 1.28092 1.09381 0.86172 0.79461 0.82313 0.78014 1.21521 1.20756 1.21702 0.93820 0.93778 0.89353 0.91265 0.89723 0.91156 0.91514 0.89283 0.91266 0.91909 0.91804 0.92089 0.91674 0.91722 0.92710 0.94135 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.36 -5.32 9.92 -54.74 -0.54 -5.87 16 3 C 0.07 0.97 2.27 -27.88 -0.06 0.91 16 4 H 0.09 1.11 6.59 -51.93 -0.34 0.76 16 5 C -0.18 -2.22 9.13 37.16 0.34 -1.88 16 6 C 0.52 8.50 6.99 -10.99 -0.08 8.42 16 7 O -0.53 -10.46 15.91 -13.96 -0.22 -10.68 16 8 N -0.59 -9.15 2.73 -164.44 -0.45 -9.60 16 9 C 0.12 1.67 6.16 -3.63 -0.02 1.65 16 10 C -0.13 -1.84 6.11 -26.62 -0.16 -2.00 16 11 C -0.13 -2.18 5.12 -26.86 -0.14 -2.32 16 12 C 0.15 2.87 3.53 -66.35 -0.23 2.64 16 13 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 14 C 0.12 1.94 2.20 -66.86 -0.15 1.80 16 15 H 0.10 1.52 4.92 -51.93 -0.26 1.26 16 16 C -0.16 -2.65 5.82 -25.18 -0.15 -2.80 16 17 C 0.18 3.94 5.23 -2.89 -0.02 3.93 16 18 N -0.60 -13.82 2.91 -162.21 -0.47 -14.29 16 19 C -0.23 -5.94 10.28 -15.06 -0.15 -6.10 16 20 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 21 C 0.00 -0.11 5.48 -17.43 -0.10 -0.21 16 22 N -0.92 -25.59 10.36 55.49 0.57 -25.02 16 23 Si 0.91 21.16 29.56 -169.99 -5.02 16.14 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.04 0.39 7.98 -51.93 -0.41 -0.02 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.73 7.98 -51.93 -0.41 0.32 16 31 H 0.08 1.08 4.29 -51.93 -0.22 0.86 16 32 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.07 0.92 7.58 -51.93 -0.39 0.52 16 34 H 0.09 1.30 6.98 -51.93 -0.36 0.94 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.16 7.26 -51.93 -0.38 0.78 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.09 6.92 -51.93 -0.36 0.73 16 40 H 0.06 0.99 6.45 -51.93 -0.34 0.66 16 41 H 0.05 1.35 7.20 -51.93 -0.37 0.97 16 42 H 0.04 1.01 7.70 -51.93 -0.40 0.61 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -30.43 326.78 -7.79 -38.22 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.75 Total: 0.74 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 0.18 Total: 5.43 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.35 Total: -48.91 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.77 Total: -16.55 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.43 -7.79 -38.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049358887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.593 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds