Wall clock time and date at job start Tue Mar 31 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00176 * 2 1 4 4 H 1.09004 * 109.46823 * 30.00190 * 3 2 1 5 5 C 1.52995 * 109.47388 * 270.00429 * 3 2 1 6 6 C 1.50703 * 109.47431 * 150.00108 * 3 2 1 7 7 O 1.21283 * 119.99599 * 13.93977 * 6 3 2 8 8 N 1.34772 * 120.00041 * 193.94293 * 6 3 2 9 9 C 1.46802 * 119.57172 * 174.89566 * 8 6 3 10 10 C 1.53469 * 107.59848 * 232.01845 * 9 8 6 11 11 C 1.52739 * 108.43716 * 301.92341 * 10 9 8 12 12 C 1.53016 * 110.79880 * 63.77969 * 11 10 9 13 13 H 1.08994 * 111.38480 * 69.70496 * 12 11 10 14 14 C 1.45925 * 118.89345 * 355.46033 * 8 6 3 15 15 H 1.08996 * 111.00229 * 12.45293 * 14 8 6 16 16 C 1.54416 * 110.92504 * 248.91009 * 14 8 6 17 17 C 1.54539 * 102.36620 * 204.05491 * 16 14 8 18 18 N 1.47129 * 107.26314 * 22.03033 * 17 16 14 19 19 C 1.36932 * 125.76273 * 182.47899 * 18 17 16 20 20 H 1.08001 * 119.99397 * 184.54910 * 19 18 17 21 21 C 1.38811 * 120.00631 * 4.55151 * 19 18 17 22 22 N 1.31617 * 119.99449 * 354.38237 * 21 19 18 23 23 Si 1.86794 * 120.00362 * 174.38490 * 21 19 18 24 24 H 1.48500 * 109.47269 * 275.00616 * 23 21 19 25 25 H 1.48505 * 109.47101 * 35.00083 * 23 21 19 26 26 H 1.48503 * 109.47400 * 155.00032 * 23 21 19 27 27 H 1.08997 * 109.46959 * 300.00013 * 1 2 3 28 28 H 1.09003 * 109.46855 * 59.99858 * 1 2 3 29 29 H 1.08996 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47529 * 64.53146 * 5 3 2 31 31 H 1.09003 * 109.47476 * 184.53518 * 5 3 2 32 32 H 1.09007 * 109.46911 * 304.53230 * 5 3 2 33 33 H 1.08998 * 109.82948 * 112.49586 * 9 8 6 34 34 H 1.08993 * 109.89029 * 351.57417 * 9 8 6 35 35 H 1.09002 * 109.63936 * 182.24512 * 10 9 8 36 36 H 1.08995 * 109.64410 * 61.61336 * 10 9 8 37 37 H 1.09004 * 109.21538 * 303.44054 * 11 10 9 38 38 H 1.08999 * 109.17474 * 184.09315 * 11 10 9 39 39 H 1.08997 * 110.81153 * 322.50776 * 16 14 8 40 40 H 1.09000 * 110.81126 * 86.02298 * 16 14 8 41 41 H 1.09000 * 109.99586 * 262.55361 * 17 16 14 42 42 H 1.09002 * 109.76704 * 141.37567 * 17 16 14 43 43 H 0.97006 * 119.99759 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 3.3387 1.2639 0.7104 7 8 3.8667 0.1979 0.9470 8 7 3.9399 2.4111 1.0828 9 6 5.1764 2.3580 1.8723 10 6 4.9784 3.2504 3.1051 11 6 4.6488 4.6641 2.6302 12 6 3.3216 4.6859 1.8688 13 1 2.4778 4.5102 2.5360 14 6 3.3339 3.6817 0.6985 15 1 2.3211 3.5339 0.3236 16 6 4.2026 4.4130 -0.3480 17 6 3.7859 5.8881 -0.1514 18 7 3.2225 6.0060 1.2026 19 6 2.6911 7.1420 1.7521 20 1 2.3690 7.1435 2.7830 21 6 2.5661 8.2917 0.9844 22 7 3.0583 8.3247 -0.2359 23 14 1.6995 9.7918 1.6829 24 1 0.2356 9.6617 1.4701 25 1 1.9810 9.8935 3.1375 26 1 2.1930 11.0129 0.9967 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.2499 1.8789 -1.9323 31 1 2.7340 2.7313 -1.4435 32 1 2.8169 1.0359 -1.9793 33 1 6.0111 2.7288 1.2775 34 1 5.3725 1.3326 2.1857 35 1 5.8940 3.2667 3.6964 36 1 4.1561 2.8652 3.7080 37 1 5.4445 5.0168 1.9740 38 1 4.5774 5.3245 3.4943 39 1 5.2627 4.2744 -0.1362 40 1 3.9606 4.0758 -1.3559 41 1 3.0344 6.1648 -0.8910 42 1 4.6589 6.5337 -0.2472 43 1 2.9713 9.1283 -0.7723 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049358887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:02 Heat of formation + Delta-G solvation = -62.912276 kcal Electronic energy + Delta-G solvation = -24099.377219 eV Core-core repulsion = 20758.981928 eV Total energy + Delta-G solvation = -3340.395291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.88102 -39.83123 -38.51237 -36.50971 -34.56998 -33.95148 -32.17514 -30.80209 -29.76230 -27.71995 -26.57420 -26.14343 -24.55365 -23.13684 -22.05493 -21.45606 -19.56655 -18.81622 -18.70649 -17.52856 -16.97372 -16.72721 -16.43467 -16.17777 -15.80132 -15.63200 -15.11154 -14.90763 -14.57662 -14.31972 -14.15803 -13.82482 -13.66909 -13.37828 -13.35373 -12.92108 -12.80941 -12.77380 -12.55518 -12.33154 -12.26618 -12.10569 -12.06328 -11.87628 -11.57975 -11.51765 -11.33781 -10.94889 -10.64338 -10.48426 -9.66049 -8.85468 -7.81819 -5.15858 1.45906 1.49801 1.50291 1.57837 1.71809 2.51157 2.82285 3.34489 3.36705 3.64720 3.73611 3.83985 3.90076 3.98146 4.05958 4.08049 4.17071 4.37743 4.47930 4.54152 4.54282 4.59188 4.60750 4.67946 4.75279 4.81088 4.85210 4.86575 5.00110 5.04481 5.11374 5.21102 5.33486 5.45454 5.53596 5.58123 5.67739 5.80330 6.03726 6.21075 6.33584 7.06964 7.13573 7.79242 8.43891 9.28103 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.005382 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.320712 B = 5201.736871 C = 5837.073976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.390 6.390 3 C 0.069 3.931 4 H 0.099 0.901 5 C -0.173 4.173 6 C 0.513 3.487 7 O -0.567 6.567 8 N -0.587 5.587 9 C 0.113 3.887 10 C -0.119 4.119 11 C -0.120 4.120 12 C 0.148 3.852 13 H 0.060 0.940 14 C 0.137 3.863 15 H 0.108 0.892 16 C -0.139 4.139 17 C 0.189 3.811 18 N -0.615 5.615 19 C -0.233 4.233 20 H 0.081 0.919 21 C -0.059 4.059 22 N -0.948 5.948 23 Si 0.970 3.030 24 H -0.285 1.285 25 H -0.273 1.273 26 H -0.299 1.299 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.025 0.975 42 H 0.003 0.997 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 -12.392 0.832 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.309 6.309 3 C 0.008 3.992 4 H 0.117 0.883 5 C -0.231 4.231 6 C 0.302 3.698 7 O -0.445 6.445 8 N -0.320 5.320 9 C -0.009 4.009 10 C -0.158 4.158 11 C -0.160 4.160 12 C 0.041 3.959 13 H 0.078 0.922 14 C 0.032 3.968 15 H 0.126 0.874 16 C -0.178 4.178 17 C 0.064 3.936 18 N -0.340 5.340 19 C -0.362 4.362 20 H 0.099 0.901 21 C -0.252 4.252 22 N -0.597 5.597 23 Si 0.799 3.201 24 H -0.212 1.212 25 H -0.198 1.198 26 H -0.226 1.226 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.043 0.957 42 H 0.021 0.979 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.480 -12.887 0.905 13.004 hybrid contribution -0.480 1.587 0.164 1.666 sum -1.960 -11.300 1.068 11.518 Atomic orbital electron populations 1.23112 0.78738 1.04356 1.01319 1.87981 1.21827 1.25851 1.95197 1.22032 0.92577 0.86727 0.97825 0.88335 1.22375 1.04598 1.02375 0.93720 1.20857 0.87128 0.83363 0.78482 1.90642 1.66648 1.30537 1.56716 1.47809 1.25834 1.04967 1.53371 1.21770 0.85492 1.01473 0.92124 1.21844 1.02932 0.94176 0.96826 1.21922 0.98094 0.96352 0.99636 1.21588 0.96370 0.84884 0.93095 0.92174 1.21953 0.97420 0.82007 0.95427 0.87425 1.23074 0.99946 0.95684 0.99136 1.20916 0.95364 0.90879 0.86472 1.44917 1.70808 1.05412 1.12851 1.19333 1.32541 0.88749 0.95591 0.90145 1.25510 1.02179 1.00739 0.96815 1.70145 1.50787 1.28245 1.10505 0.85227 0.78305 0.78965 0.77626 1.21224 1.19806 1.22550 0.93125 0.92210 0.87907 0.89203 0.90169 0.91620 0.90666 0.89146 0.88780 0.91596 0.93169 0.93205 0.90993 0.89505 0.95654 0.97861 0.94458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.82 113.37 1.23 1.60 16 2 O -0.39 -10.67 9.92 -130.32 -1.29 -11.96 16 3 C 0.07 1.80 2.27 29.85 0.07 1.86 16 4 H 0.10 2.27 6.59 -2.38 -0.02 2.25 16 5 C -0.17 -3.88 9.13 71.98 0.66 -3.22 16 6 C 0.51 15.98 6.99 87.66 0.61 16.59 16 7 O -0.57 -21.47 15.91 15.62 0.25 -21.22 16 8 N -0.59 -16.92 2.73 -792.57 -2.16 -19.09 16 9 C 0.11 2.98 6.16 86.48 0.53 3.51 16 10 C -0.12 -3.01 6.11 30.67 0.19 -2.82 16 11 C -0.12 -3.92 5.12 30.51 0.16 -3.76 16 12 C 0.15 5.35 3.53 45.08 0.16 5.51 16 13 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 14 C 0.14 4.20 2.20 45.99 0.10 4.30 16 15 H 0.11 3.13 4.92 -2.39 -0.01 3.11 16 16 C -0.14 -4.59 5.82 31.60 0.18 -4.41 16 17 C 0.19 8.50 5.23 86.78 0.45 8.95 16 18 N -0.61 -28.49 2.91 -667.10 -1.94 -30.43 16 19 C -0.23 -12.14 10.28 84.03 0.86 -11.28 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.06 -3.18 5.48 84.86 0.47 -2.72 16 22 N -0.95 -54.14 10.36 21.65 0.22 -53.92 16 23 Si 0.97 43.83 29.56 68.60 2.03 45.86 16 24 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 27 H 0.05 0.83 8.08 -2.39 -0.02 0.82 16 28 H 0.06 0.88 7.98 -2.39 -0.02 0.86 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.63 7.98 -2.39 -0.02 1.61 16 31 H 0.08 1.85 4.29 -2.39 -0.01 1.84 16 32 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.08 1.89 7.58 -2.39 -0.02 1.87 16 34 H 0.09 2.45 6.98 -2.39 -0.02 2.43 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.78 7.26 -2.38 -0.02 1.76 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 39 H 0.07 2.29 6.92 -2.39 -0.02 2.28 16 40 H 0.09 2.51 6.45 -2.39 -0.02 2.49 16 41 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 42 H 0.00 0.16 7.70 -2.39 -0.02 0.14 16 43 H 0.25 13.82 8.31 -92.70 -0.77 13.05 16 Total: -1.00 -66.26 326.78 3.77 -62.49 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.00 Total: 14.15 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 5.67 Total: 14.11 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -3.88 Total: -103.43 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.04 Total: -33.18 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -66.26 3.77 -62.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049358887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.424 kcal (2) G-P(sol) polarization free energy of solvation -66.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds