Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00127 * 2 1 4 4 H 1.09007 * 109.46860 * 29.99996 * 3 2 1 5 5 C 1.52996 * 109.47226 * 270.00417 * 3 2 1 6 6 C 1.50694 * 109.47159 * 149.99971 * 3 2 1 7 7 O 1.21286 * 120.00111 * 10.02961 * 6 3 2 8 8 N 1.34780 * 120.00195 * 190.03185 * 6 3 2 9 9 C 1.47852 * 122.22769 * 5.29524 * 8 6 3 10 10 C 1.52244 * 111.31925 * 232.42563 * 9 8 6 11 11 C 1.53876 * 111.59098 * 311.74134 * 10 9 8 12 12 C 1.51079 * 107.34103 * 56.76973 * 11 10 9 13 13 H 1.09003 * 108.30651 * 51.24562 * 12 11 10 14 14 C 1.45721 * 122.22872 * 185.58360 * 8 6 3 15 15 H 1.09007 * 111.06839 * 240.51640 * 14 8 6 16 16 C 1.53433 * 116.38062 * 9.88590 * 14 8 6 17 17 C 1.55474 * 101.67068 * 152.73768 * 16 14 8 18 18 N 1.45027 * 119.18732 * 176.12406 * 12 11 10 19 19 C 1.36936 * 126.55863 * 331.18789 * 18 12 11 20 20 H 1.07999 * 120.00177 * 359.97438 * 19 18 12 21 21 C 1.38815 * 119.99942 * 180.02562 * 19 18 12 22 22 N 1.31616 * 119.99895 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47315 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47309 * 119.99849 * 23 21 19 26 26 H 1.48501 * 109.47056 * 239.99715 * 23 21 19 27 27 H 1.09003 * 109.47278 * 59.99729 * 1 2 3 28 28 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47038 * 299.99734 * 1 2 3 30 30 H 1.08997 * 109.47340 * 55.00344 * 5 3 2 31 31 H 1.09001 * 109.47175 * 175.01162 * 5 3 2 32 32 H 1.09003 * 109.46592 * 295.00083 * 5 3 2 33 33 H 1.09000 * 109.15799 * 352.89126 * 9 8 6 34 34 H 1.09004 * 109.15960 * 112.07753 * 9 8 6 35 35 H 1.09006 * 109.16177 * 191.11678 * 10 9 8 36 36 H 1.08999 * 108.91417 * 72.20797 * 10 9 8 37 37 H 1.08994 * 109.87786 * 297.31162 * 11 10 9 38 38 H 1.08995 * 109.94201 * 176.26333 * 11 10 9 39 39 H 1.08999 * 110.98788 * 270.83319 * 16 14 8 40 40 H 1.08999 * 110.98376 * 34.63949 * 16 14 8 41 41 H 1.08996 * 109.95785 * 218.02059 * 17 16 14 42 42 H 1.08996 * 109.96063 * 96.78266 * 17 16 14 43 43 H 0.96999 * 119.99937 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.8329 0.1976 1.0102 8 7 3.9775 2.4115 1.0126 9 6 3.3701 3.7383 0.7745 10 6 4.3009 4.6372 -0.0276 11 6 5.7273 4.6343 0.5496 12 6 6.2010 3.1999 0.5720 13 1 6.0438 2.7719 -0.4180 14 6 5.3153 2.4274 1.5901 15 1 5.3152 2.9133 2.5659 16 6 6.0596 1.0861 1.6230 17 6 7.5434 1.5488 1.5851 18 7 7.5578 2.9098 0.9943 19 6 8.6444 3.7340 0.8708 20 1 8.5339 4.7093 0.4202 21 6 9.8880 3.3155 1.3238 22 7 10.0226 2.1268 1.8725 23 14 11.3700 4.4401 1.1561 24 1 10.9559 5.7119 0.5109 25 1 11.9291 4.7263 2.5017 26 1 12.4035 3.7759 0.3218 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.2718 1.7169 -1.9814 31 1 2.5779 2.8002 -1.4437 32 1 2.9512 1.1291 -1.9298 33 1 2.4370 3.6113 0.2256 34 1 3.1586 4.2122 1.7331 35 1 3.9135 5.6561 -0.0144 36 1 4.3329 4.2831 -1.0580 37 1 5.7181 5.0376 1.5621 38 1 6.3849 5.2321 -0.0814 39 1 5.8436 0.5422 2.5426 40 1 5.8162 0.4831 0.7482 41 1 8.1296 0.8687 0.9672 42 1 7.9501 1.5776 2.5960 43 1 10.8916 1.8345 2.1894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049358889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -38.862439 kcal Electronic energy + Delta-G solvation = -23967.719687 eV Core-core repulsion = 20628.367275 eV Total energy + Delta-G solvation = -3339.352411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50374 -38.50165 -37.05697 -35.50429 -32.63296 -32.49552 -31.29518 -28.85723 -28.21233 -26.96937 -25.17908 -24.45836 -23.20654 -21.51451 -20.87296 -19.70412 -18.75259 -17.25449 -16.73671 -16.34706 -15.60832 -15.37109 -14.89523 -14.70338 -14.55269 -14.22331 -13.93568 -13.57720 -13.38275 -13.07983 -12.59458 -12.48665 -12.40342 -12.16914 -11.96753 -11.75145 -11.54554 -11.29871 -11.10778 -10.84857 -10.69600 -10.50109 -10.35491 -10.06137 -9.98307 -9.97962 -9.81927 -9.60048 -8.90272 -8.57136 -8.20745 -6.80759 -5.68062 -3.02442 2.80760 2.88673 3.41276 3.46085 3.49090 3.80587 4.46250 4.51053 4.66272 4.82924 4.87151 5.05748 5.08438 5.16539 5.21803 5.35103 5.40671 5.44261 5.47051 5.50456 5.60264 5.63745 5.77074 5.87453 5.93972 6.02771 6.10384 6.26459 6.30080 6.39079 6.56747 6.72614 6.75391 6.91541 6.95786 7.20006 7.60675 7.66453 7.72824 7.86730 8.27041 8.45890 9.21278 9.85242 10.53634 11.43996 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031925 B = 0.004667 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.842052 B = 5997.958073 C = 6568.866900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.070 3.930 4 H 0.080 0.920 5 C -0.172 4.172 6 C 0.516 3.484 7 O -0.510 6.510 8 N -0.599 5.599 9 C 0.106 3.894 10 C -0.130 4.130 11 C -0.116 4.116 12 C 0.159 3.841 13 H 0.017 0.983 14 C 0.118 3.882 15 H 0.080 0.920 16 C -0.127 4.127 17 C 0.172 3.828 18 N -0.593 5.593 19 C -0.226 4.226 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.689 3.297 -3.877 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.009 3.991 4 H 0.098 0.902 5 C -0.230 4.230 6 C 0.302 3.698 7 O -0.385 6.385 8 N -0.334 5.334 9 C -0.016 4.016 10 C -0.169 4.169 11 C -0.154 4.154 12 C 0.049 3.951 13 H 0.034 0.966 14 C 0.014 3.986 15 H 0.098 0.902 16 C -0.166 4.166 17 C 0.048 3.952 18 N -0.317 5.317 19 C -0.355 4.355 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 H 0.060 0.940 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.074 2.503 -3.672 19.585 hybrid contribution 0.562 0.920 -0.099 1.082 sum -18.513 3.423 -3.771 19.201 Atomic orbital electron populations 1.22861 0.81020 1.03084 0.99812 1.88069 1.19284 1.25410 1.94927 1.21977 0.94014 0.86355 0.96802 0.90206 1.22288 1.03276 1.02436 0.94989 1.20173 0.86173 0.83877 0.79559 1.90728 1.66348 1.29169 1.52223 1.47967 1.17888 1.04963 1.62591 1.21703 0.96144 0.83369 1.00428 1.21837 0.96224 0.99022 0.99830 1.21432 0.94113 0.98651 1.01238 1.20759 0.86381 0.92930 0.95027 0.96565 1.22417 0.79462 0.99790 0.96920 0.90192 1.22905 0.96596 0.94616 1.02467 1.21750 0.89517 0.85098 0.98882 1.44091 1.01943 1.15051 1.70635 1.19031 0.85670 0.96881 1.33870 0.90306 1.24808 0.97593 0.97024 1.00945 1.69960 1.22861 1.18311 1.45474 0.86077 0.83034 0.79601 0.77229 1.20555 1.21792 1.21799 0.93994 0.89265 0.94001 0.91441 0.90549 0.90954 0.90416 0.91430 0.90819 0.91782 0.91752 0.91415 0.91901 0.90503 0.94240 0.92492 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.36 -4.94 9.90 -54.94 -0.54 -5.48 16 3 C 0.07 0.86 2.29 -27.89 -0.06 0.80 16 4 H 0.08 0.75 6.91 -51.92 -0.36 0.39 16 5 C -0.17 -1.77 9.22 37.16 0.34 -1.43 16 6 C 0.52 8.58 6.96 -10.99 -0.08 8.50 16 7 O -0.51 -10.69 13.53 -14.16 -0.19 -10.88 16 8 N -0.60 -9.36 2.92 -164.27 -0.48 -9.84 16 9 C 0.11 1.20 5.57 -3.69 -0.02 1.17 16 10 C -0.13 -1.55 5.89 -26.66 -0.16 -1.70 16 11 C -0.12 -1.93 5.45 -27.24 -0.15 -2.08 16 12 C 0.16 3.29 2.58 -68.36 -0.18 3.11 16 13 H 0.02 0.38 8.03 -51.93 -0.42 -0.04 16 14 C 0.12 2.27 3.33 -66.80 -0.22 2.05 16 15 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 16 C -0.13 -2.78 4.93 -25.19 -0.12 -2.91 16 17 C 0.17 4.41 5.47 -1.69 -0.01 4.40 16 18 N -0.59 -15.23 3.35 -163.29 -0.55 -15.78 16 19 C -0.23 -6.24 9.94 -15.06 -0.15 -6.39 16 20 H 0.08 2.08 7.30 -52.49 -0.38 1.70 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -27.37 10.46 55.49 0.58 -26.79 16 23 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H 0.04 0.29 7.78 -51.93 -0.40 -0.12 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.54 7.78 -51.93 -0.40 0.14 16 31 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.65 4.74 -51.93 -0.25 0.40 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.76 7.87 -51.93 -0.41 0.35 16 37 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 38 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.08 1.77 6.39 -51.93 -0.33 1.44 16 41 H 0.04 1.11 7.81 -51.93 -0.41 0.71 16 42 H 0.06 1.58 7.19 -51.93 -0.37 1.21 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 327.78 15.07 4.94 4.94 Total: -1.00 -33.66 327.78 -8.03 -41.69 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.95 Total: -1.51 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 0.19 Total: 6.56 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.45 Total: -52.41 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.74 Total: -16.36 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.66 -8.03 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049358889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.824 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds