Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00127 * 2 1 4 4 H 1.09007 * 109.46860 * 29.99996 * 3 2 1 5 5 C 1.52996 * 109.47226 * 270.00417 * 3 2 1 6 6 C 1.50694 * 109.47159 * 149.99971 * 3 2 1 7 7 O 1.21286 * 120.00111 * 10.02961 * 6 3 2 8 8 N 1.34780 * 120.00195 * 190.03185 * 6 3 2 9 9 C 1.47852 * 122.22769 * 5.29524 * 8 6 3 10 10 C 1.52244 * 111.31925 * 232.42563 * 9 8 6 11 11 C 1.53876 * 111.59098 * 311.74134 * 10 9 8 12 12 C 1.51079 * 107.34103 * 56.76973 * 11 10 9 13 13 H 1.09003 * 108.30651 * 51.24562 * 12 11 10 14 14 C 1.45721 * 122.22872 * 185.58360 * 8 6 3 15 15 H 1.09007 * 111.06839 * 240.51640 * 14 8 6 16 16 C 1.53433 * 116.38062 * 9.88590 * 14 8 6 17 17 C 1.55474 * 101.67068 * 152.73768 * 16 14 8 18 18 N 1.45027 * 119.18732 * 176.12406 * 12 11 10 19 19 C 1.36936 * 126.55863 * 331.18789 * 18 12 11 20 20 H 1.07999 * 120.00177 * 359.97438 * 19 18 12 21 21 C 1.38815 * 119.99942 * 180.02562 * 19 18 12 22 22 N 1.31616 * 119.99895 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47315 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47309 * 119.99849 * 23 21 19 26 26 H 1.48501 * 109.47056 * 239.99715 * 23 21 19 27 27 H 1.09003 * 109.47278 * 59.99729 * 1 2 3 28 28 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47038 * 299.99734 * 1 2 3 30 30 H 1.08997 * 109.47340 * 55.00344 * 5 3 2 31 31 H 1.09001 * 109.47175 * 175.01162 * 5 3 2 32 32 H 1.09003 * 109.46592 * 295.00083 * 5 3 2 33 33 H 1.09000 * 109.15799 * 352.89126 * 9 8 6 34 34 H 1.09004 * 109.15960 * 112.07753 * 9 8 6 35 35 H 1.09006 * 109.16177 * 191.11678 * 10 9 8 36 36 H 1.08999 * 108.91417 * 72.20797 * 10 9 8 37 37 H 1.08994 * 109.87786 * 297.31162 * 11 10 9 38 38 H 1.08995 * 109.94201 * 176.26333 * 11 10 9 39 39 H 1.08999 * 110.98788 * 270.83319 * 16 14 8 40 40 H 1.08999 * 110.98376 * 34.63949 * 16 14 8 41 41 H 1.08996 * 109.95785 * 218.02059 * 17 16 14 42 42 H 1.08996 * 109.96063 * 96.78266 * 17 16 14 43 43 H 0.96999 * 119.99937 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.8329 0.1976 1.0102 8 7 3.9775 2.4115 1.0126 9 6 3.3701 3.7383 0.7745 10 6 4.3009 4.6372 -0.0276 11 6 5.7273 4.6343 0.5496 12 6 6.2010 3.1999 0.5720 13 1 6.0438 2.7719 -0.4180 14 6 5.3153 2.4274 1.5901 15 1 5.3152 2.9133 2.5659 16 6 6.0596 1.0861 1.6230 17 6 7.5434 1.5488 1.5851 18 7 7.5578 2.9098 0.9943 19 6 8.6444 3.7340 0.8708 20 1 8.5339 4.7093 0.4202 21 6 9.8880 3.3155 1.3238 22 7 10.0226 2.1268 1.8725 23 14 11.3700 4.4401 1.1561 24 1 10.9559 5.7119 0.5109 25 1 11.9291 4.7263 2.5017 26 1 12.4035 3.7759 0.3218 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.2718 1.7169 -1.9814 31 1 2.5779 2.8002 -1.4437 32 1 2.9512 1.1291 -1.9298 33 1 2.4370 3.6113 0.2256 34 1 3.1586 4.2122 1.7331 35 1 3.9135 5.6561 -0.0144 36 1 4.3329 4.2831 -1.0580 37 1 5.7181 5.0376 1.5621 38 1 6.3849 5.2321 -0.0814 39 1 5.8436 0.5422 2.5426 40 1 5.8162 0.4831 0.7482 41 1 8.1296 0.8687 0.9672 42 1 7.9501 1.5776 2.5960 43 1 10.8916 1.8345 2.1894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049358889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -61.819679 kcal Electronic energy + Delta-G solvation = -23968.715187 eV Core-core repulsion = 20628.367275 eV Total energy + Delta-G solvation = -3340.347912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82998 -39.76396 -38.27599 -37.01017 -34.35708 -33.93911 -32.50303 -30.67066 -29.67911 -27.67074 -26.62131 -26.22926 -24.35119 -22.85605 -22.45079 -21.46842 -20.01900 -18.71972 -17.96362 -17.68443 -17.06930 -16.63084 -16.44295 -15.97694 -15.74728 -15.62835 -15.37069 -15.02637 -14.57358 -14.40880 -14.11184 -13.83760 -13.49219 -13.42270 -13.21221 -13.09742 -12.87094 -12.76163 -12.71515 -12.24769 -12.07234 -11.99011 -11.91618 -11.75987 -11.70797 -11.56738 -11.42150 -10.85618 -10.76042 -10.21723 -9.56528 -8.92071 -7.84368 -5.21712 1.45964 1.47648 1.57425 1.58577 1.75741 2.50151 2.91693 3.34564 3.34797 3.53265 3.85494 3.88691 3.99753 4.03261 4.06116 4.10268 4.24319 4.35109 4.48845 4.54793 4.57077 4.58895 4.64263 4.68658 4.76900 4.81445 4.88754 4.91790 5.02543 5.08912 5.15902 5.23814 5.30438 5.44161 5.48600 5.56331 5.60984 5.70411 6.13056 6.17445 6.51468 7.04420 7.20750 7.74903 8.45332 9.27877 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031925 B = 0.004667 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.842052 B = 5997.958073 C = 6568.866900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.077 3.923 4 H 0.121 0.879 5 C -0.168 4.168 6 C 0.504 3.496 7 O -0.568 6.568 8 N -0.597 5.597 9 C 0.098 3.902 10 C -0.121 4.121 11 C -0.112 4.112 12 C 0.153 3.847 13 H -0.001 1.001 14 C 0.132 3.868 15 H 0.082 0.918 16 C -0.111 4.111 17 C 0.183 3.817 18 N -0.612 5.612 19 C -0.232 4.232 20 H 0.092 0.908 21 C -0.071 4.071 22 N -0.956 5.956 23 Si 0.980 3.020 24 H -0.259 1.259 25 H -0.292 1.292 26 H -0.297 1.297 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.061 0.939 41 H -0.002 1.002 42 H 0.027 0.973 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.998 6.370 -4.855 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.016 3.984 4 H 0.139 0.861 5 C -0.225 4.225 6 C 0.293 3.707 7 O -0.446 6.446 8 N -0.331 5.331 9 C -0.022 4.022 10 C -0.159 4.159 11 C -0.151 4.151 12 C 0.045 3.955 13 H 0.017 0.983 14 C 0.027 3.973 15 H 0.100 0.900 16 C -0.149 4.149 17 C 0.058 3.942 18 N -0.337 5.337 19 C -0.360 4.360 20 H 0.110 0.890 21 C -0.263 4.263 22 N -0.606 5.606 23 Si 0.809 3.191 24 H -0.183 1.183 25 H -0.220 1.220 26 H -0.224 1.224 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.137 0.863 34 H 0.107 0.893 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.016 0.984 42 H 0.045 0.955 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.454 5.639 -4.679 23.620 hybrid contribution 1.538 -0.089 0.178 1.551 sum -20.917 5.550 -4.501 22.104 Atomic orbital electron populations 1.23107 0.78509 1.04122 1.01659 1.88030 1.22097 1.26540 1.95185 1.22034 0.91740 0.86963 0.97619 0.86125 1.22299 1.04108 1.02570 0.93521 1.21202 0.87657 0.83062 0.78794 1.90699 1.68154 1.31311 1.54475 1.48065 1.16207 1.07032 1.61797 1.22134 0.97115 0.80701 1.02291 1.21832 0.92892 1.01722 0.99487 1.21426 0.97199 0.94835 1.01603 1.20951 0.84162 0.96307 0.94082 0.98343 1.22002 0.81593 0.96918 0.96813 0.90000 1.22605 0.94545 0.96139 1.01655 1.21424 0.91384 0.85186 0.96227 1.44354 1.04003 1.14750 1.70557 1.19481 0.86386 0.97345 1.32820 0.89037 1.25724 1.00682 0.98558 1.01372 1.70196 1.22974 1.20353 1.47036 0.84976 0.78971 0.78338 0.76856 1.18326 1.21955 1.22414 0.91583 0.88895 0.92536 0.88459 0.88730 0.93944 0.86260 0.89272 0.86592 0.91508 0.91699 0.92398 0.92020 0.91996 0.98382 0.95495 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.40 -10.21 9.90 -130.14 -1.29 -11.50 16 3 C 0.08 1.65 2.29 29.84 0.07 1.72 16 4 H 0.12 1.57 6.91 -2.38 -0.02 1.55 16 5 C -0.17 -2.82 9.22 71.98 0.66 -2.16 16 6 C 0.50 16.17 6.96 87.65 0.61 16.78 16 7 O -0.57 -24.45 13.53 15.79 0.21 -24.23 16 8 N -0.60 -17.47 2.92 -792.02 -2.31 -19.78 16 9 C 0.10 1.72 5.57 85.87 0.48 2.19 16 10 C -0.12 -2.30 5.89 30.64 0.18 -2.12 16 11 C -0.11 -3.49 5.45 30.26 0.16 -3.32 16 12 C 0.15 6.37 2.58 45.50 0.12 6.49 16 13 H 0.00 -0.04 8.03 -2.39 -0.02 -0.06 16 14 C 0.13 5.08 3.33 46.14 0.15 5.23 16 15 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 16 C -0.11 -5.13 4.93 31.59 0.16 -4.98 16 17 C 0.18 10.07 5.47 86.87 0.48 10.55 16 18 N -0.61 -32.63 3.35 -670.51 -2.25 -34.87 16 19 C -0.23 -13.03 9.94 84.03 0.84 -12.20 16 20 H 0.09 4.80 7.30 -2.91 -0.02 4.78 16 21 C -0.07 -4.12 5.49 84.86 0.47 -3.66 16 22 N -0.96 -59.94 10.46 21.65 0.23 -59.71 16 23 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 27 H 0.07 0.61 7.78 -2.39 -0.02 0.59 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 0.63 8.09 -2.39 -0.02 0.61 16 30 H 0.10 1.08 7.78 -2.39 -0.02 1.06 16 31 H 0.09 1.22 5.93 -2.39 -0.01 1.21 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 1.17 4.74 -2.39 -0.01 1.16 16 34 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.07 1.28 7.87 -2.39 -0.02 1.26 16 37 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 38 H 0.06 1.91 7.70 -2.39 -0.02 1.89 16 39 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.06 3.05 6.39 -2.39 -0.02 3.04 16 41 H 0.00 -0.13 7.81 -2.39 -0.02 -0.15 16 42 H 0.03 1.61 7.19 -2.39 -0.02 1.60 16 43 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -80.59 327.78 3.20 -77.38 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.99 Total: 8.27 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 5.60 Total: 16.07 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -4.33 Total: -114.36 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -1.07 Total: -35.74 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -80.59 3.20 -77.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049358889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.563 kcal (2) G-P(sol) polarization free energy of solvation -80.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds