Wall clock time and date at job start Tue Mar 31 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99968 * 2 1 4 4 H 1.08997 * 109.47340 * 30.00044 * 3 2 1 5 5 C 1.53004 * 109.47298 * 270.00253 * 3 2 1 6 6 C 1.50701 * 109.47317 * 150.00219 * 3 2 1 7 7 O 1.21276 * 119.99513 * 5.00162 * 6 3 2 8 8 N 1.34772 * 120.00119 * 185.00029 * 6 3 2 9 9 C 1.45737 * 117.75997 * 359.97438 * 8 6 3 10 10 C 1.53058 * 109.53993 * 141.11980 * 9 8 6 11 11 C 1.53939 * 107.78880 * 54.78131 * 10 9 8 12 12 C 1.52924 * 109.04551 * 292.67449 * 11 10 9 13 13 H 1.09001 * 111.26567 * 294.26982 * 12 11 10 14 14 C 1.44188 * 117.75956 * 179.97438 * 8 6 3 15 15 H 1.09000 * 109.22457 * 332.60184 * 14 8 6 16 16 C 1.54059 * 111.76883 * 93.50735 * 14 8 6 17 17 C 1.54057 * 103.74839 * 153.24819 * 16 14 8 18 18 N 1.46888 * 107.70827 * 342.87822 * 17 16 14 19 19 C 1.36929 * 125.58604 * 177.05465 * 18 17 16 20 20 H 1.08000 * 120.00740 * 179.97438 * 19 18 17 21 21 C 1.38818 * 119.99628 * 359.97438 * 19 18 17 22 22 N 1.31617 * 120.00223 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47598 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47250 * 119.99945 * 23 21 19 26 26 H 1.48503 * 109.47357 * 239.99724 * 23 21 19 27 27 H 1.09002 * 109.46983 * 299.99901 * 1 2 3 28 28 H 1.09003 * 109.47716 * 59.99633 * 1 2 3 29 29 H 1.08995 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47067 * 59.99515 * 5 3 2 31 31 H 1.08996 * 109.47839 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.46755 * 300.00150 * 5 3 2 33 33 H 1.09002 * 109.45940 * 261.14040 * 9 8 6 34 34 H 1.09000 * 109.45877 * 21.10488 * 9 8 6 35 35 H 1.09002 * 109.62754 * 173.50185 * 10 9 8 36 36 H 1.08997 * 109.63298 * 294.10555 * 10 9 8 37 37 H 1.09002 * 109.03874 * 173.25698 * 11 10 9 38 38 H 1.09006 * 110.48786 * 52.96544 * 11 10 9 39 39 H 1.09002 * 110.57499 * 271.81339 * 16 14 8 40 40 H 1.09001 * 110.57474 * 34.68609 * 16 14 8 41 41 H 1.09003 * 109.80646 * 102.42274 * 17 16 14 42 42 H 1.08993 * 109.81778 * 223.32408 * 17 16 14 43 43 H 0.96998 * 120.00113 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2045 1.0912 8 7 4.0254 2.4040 0.9223 9 6 3.4383 3.6491 0.4437 10 6 3.6951 4.7613 1.4634 11 6 5.2121 4.8257 1.7170 12 6 5.6532 3.5480 2.4321 13 1 5.2195 3.4836 3.4300 14 6 5.2907 2.3084 1.6071 15 1 5.2809 1.4348 2.2589 16 6 6.4672 2.1894 0.6196 17 6 7.6594 2.7779 1.3978 18 7 7.1197 3.5539 2.5222 19 6 7.8623 4.1865 3.4831 20 1 7.3698 4.7347 4.2725 21 6 9.2485 4.1232 3.4424 22 7 9.8489 3.4555 2.4801 23 14 10.2616 4.9868 4.7528 24 1 9.3544 5.6636 5.7141 25 1 11.0922 3.9890 5.4739 26 1 11.1440 5.9948 4.1120 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.2568 1.8014 -1.9563 31 1 2.6605 2.7673 -1.4426 32 1 2.8828 1.0775 -1.9563 33 1 3.8897 3.9201 -0.5107 34 1 2.3642 3.5173 0.3129 35 1 3.3593 5.7153 1.0569 36 1 3.1575 4.5434 2.3862 37 1 5.4309 5.6877 2.3473 38 1 5.7527 4.9190 0.7751 39 1 6.6521 1.1450 0.3681 40 1 6.2722 2.7724 -0.2806 41 1 8.2891 1.9717 1.7740 42 1 8.2415 3.4288 0.7455 43 1 10.8174 3.4110 2.4519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049358891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:08 Heat of formation + Delta-G solvation = -43.154190 kcal Electronic energy + Delta-G solvation = -23837.823920 eV Core-core repulsion = 20498.285404 eV Total energy + Delta-G solvation = -3339.538516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67862 -38.56604 -37.20531 -35.51580 -32.68941 -32.51450 -31.34679 -28.96986 -28.25106 -27.00459 -25.21788 -24.39007 -23.41261 -22.02913 -20.48620 -19.84067 -18.22959 -17.59527 -16.91627 -16.59154 -15.81009 -15.43441 -14.89337 -14.75871 -14.48852 -14.20143 -13.86387 -13.55686 -13.38202 -13.27713 -12.62349 -12.58363 -12.41878 -12.03077 -11.97513 -11.89632 -11.44427 -11.30577 -11.03336 -10.95361 -10.75601 -10.68471 -10.47773 -10.11868 -10.06228 -9.95269 -9.64680 -9.57234 -9.28161 -8.60007 -8.30556 -6.86003 -5.71158 -3.06103 2.73291 2.87268 3.39928 3.45313 3.47919 3.79344 4.42604 4.48282 4.61727 4.80735 4.90192 5.05906 5.08819 5.15040 5.20796 5.33962 5.40637 5.44632 5.47954 5.48447 5.55878 5.64743 5.67691 5.89953 5.92421 5.98975 6.03678 6.23141 6.29503 6.38550 6.57281 6.60361 6.73979 6.83993 7.00509 7.12494 7.54253 7.58446 7.66124 7.84501 8.25355 8.37860 9.20998 9.81455 10.46459 11.39730 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034984 B = 0.004318 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.174514 B = 6482.600647 C = 6763.395284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.085 0.915 5 C -0.179 4.179 6 C 0.505 3.495 7 O -0.519 6.519 8 N -0.585 5.585 9 C 0.105 3.895 10 C -0.133 4.133 11 C -0.130 4.130 12 C 0.162 3.838 13 H 0.053 0.947 14 C 0.137 3.863 15 H 0.092 0.908 16 C -0.151 4.151 17 C 0.178 3.822 18 N -0.595 5.595 19 C -0.227 4.227 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.040 0.960 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.626 0.590 -7.530 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.009 3.991 4 H 0.102 0.898 5 C -0.236 4.236 6 C 0.291 3.709 7 O -0.393 6.393 8 N -0.318 5.318 9 C -0.018 4.018 10 C -0.172 4.172 11 C -0.171 4.171 12 C 0.053 3.947 13 H 0.071 0.929 14 C 0.032 3.968 15 H 0.110 0.890 16 C -0.190 4.190 17 C 0.053 3.947 18 N -0.319 5.319 19 C -0.356 4.356 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.983 -0.122 -7.241 19.386 hybrid contribution 0.385 0.801 0.523 1.031 sum -17.598 0.680 -6.719 18.849 Atomic orbital electron populations 1.22864 0.80917 1.03122 0.99880 1.88062 1.19387 1.25370 1.94926 1.21963 0.93868 0.86459 0.96804 0.89765 1.22404 1.03310 1.02923 0.94984 1.20422 0.86131 0.84316 0.80069 1.90711 1.69276 1.29532 1.49795 1.47016 1.20785 1.06330 1.57697 1.21705 0.97521 0.84771 0.97818 1.22055 0.98852 0.97365 0.98931 1.22317 0.92496 1.00520 1.01737 1.20781 0.87068 0.91092 0.95785 0.92866 1.21128 0.81101 1.00250 0.94285 0.88971 1.22997 0.96940 1.00780 0.98291 1.21078 0.90760 0.94846 0.88062 1.44348 0.98365 1.60161 1.29065 1.19049 0.88079 1.25348 1.03084 0.90339 1.24808 0.96421 1.00449 0.98582 1.69985 1.08259 1.45354 1.33021 0.86047 0.80248 0.78709 0.80741 1.20512 1.21732 1.21792 0.93924 0.93952 0.89250 0.91423 0.90106 0.90987 0.91550 0.90512 0.91117 0.91464 0.91879 0.91701 0.91924 0.92608 0.92890 0.94193 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.36 -4.84 9.89 -55.09 -0.54 -5.38 16 3 C 0.07 0.84 2.29 -27.88 -0.06 0.78 16 4 H 0.08 0.78 6.68 -51.93 -0.35 0.43 16 5 C -0.18 -1.68 9.13 37.16 0.34 -1.34 16 6 C 0.50 8.22 7.02 -10.99 -0.08 8.14 16 7 O -0.52 -10.85 15.79 -14.30 -0.23 -11.08 16 8 N -0.58 -9.03 2.80 -167.56 -0.47 -9.50 16 9 C 0.10 1.20 4.63 -4.42 -0.02 1.18 16 10 C -0.13 -1.63 6.15 -26.21 -0.16 -1.79 16 11 C -0.13 -2.22 5.36 -26.28 -0.14 -2.36 16 12 C 0.16 3.28 3.20 -67.60 -0.22 3.06 16 13 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.14 2.61 2.77 -68.48 -0.19 2.43 16 15 H 0.09 2.00 7.10 -51.93 -0.37 1.63 16 16 C -0.15 -3.04 6.38 -25.63 -0.16 -3.20 16 17 C 0.18 4.38 5.38 -3.28 -0.02 4.36 16 18 N -0.60 -14.94 2.93 -164.28 -0.48 -15.42 16 19 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.97 10.29 55.49 0.57 -26.39 16 23 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 28 H 0.04 0.28 7.87 -51.93 -0.41 -0.13 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 31 H 0.08 0.66 5.11 -51.93 -0.27 0.40 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.72 7.41 -51.93 -0.38 0.33 16 34 H 0.08 0.65 5.13 -51.93 -0.27 0.38 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.18 7.98 -51.93 -0.41 0.77 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.47 7.25 -51.93 -0.38 1.09 16 42 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -33.13 330.83 -8.04 -41.17 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.98 Total: -1.31 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 0.13 Total: 5.93 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.38 Total: -51.31 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.77 Total: -16.46 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.13 -8.04 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049358891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.986 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds