Wall clock time and date at job start Tue Mar 31 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99968 * 2 1 4 4 H 1.08997 * 109.47340 * 30.00044 * 3 2 1 5 5 C 1.53004 * 109.47298 * 270.00253 * 3 2 1 6 6 C 1.50701 * 109.47317 * 150.00219 * 3 2 1 7 7 O 1.21276 * 119.99513 * 5.00162 * 6 3 2 8 8 N 1.34772 * 120.00119 * 185.00029 * 6 3 2 9 9 C 1.45737 * 117.75997 * 359.97438 * 8 6 3 10 10 C 1.53058 * 109.53993 * 141.11980 * 9 8 6 11 11 C 1.53939 * 107.78880 * 54.78131 * 10 9 8 12 12 C 1.52924 * 109.04551 * 292.67449 * 11 10 9 13 13 H 1.09001 * 111.26567 * 294.26982 * 12 11 10 14 14 C 1.44188 * 117.75956 * 179.97438 * 8 6 3 15 15 H 1.09000 * 109.22457 * 332.60184 * 14 8 6 16 16 C 1.54059 * 111.76883 * 93.50735 * 14 8 6 17 17 C 1.54057 * 103.74839 * 153.24819 * 16 14 8 18 18 N 1.46888 * 107.70827 * 342.87822 * 17 16 14 19 19 C 1.36929 * 125.58604 * 177.05465 * 18 17 16 20 20 H 1.08000 * 120.00740 * 179.97438 * 19 18 17 21 21 C 1.38818 * 119.99628 * 359.97438 * 19 18 17 22 22 N 1.31617 * 120.00223 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47598 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47250 * 119.99945 * 23 21 19 26 26 H 1.48503 * 109.47357 * 239.99724 * 23 21 19 27 27 H 1.09002 * 109.46983 * 299.99901 * 1 2 3 28 28 H 1.09003 * 109.47716 * 59.99633 * 1 2 3 29 29 H 1.08995 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47067 * 59.99515 * 5 3 2 31 31 H 1.08996 * 109.47839 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.46755 * 300.00150 * 5 3 2 33 33 H 1.09002 * 109.45940 * 261.14040 * 9 8 6 34 34 H 1.09000 * 109.45877 * 21.10488 * 9 8 6 35 35 H 1.09002 * 109.62754 * 173.50185 * 10 9 8 36 36 H 1.08997 * 109.63298 * 294.10555 * 10 9 8 37 37 H 1.09002 * 109.03874 * 173.25698 * 11 10 9 38 38 H 1.09006 * 110.48786 * 52.96544 * 11 10 9 39 39 H 1.09002 * 110.57499 * 271.81339 * 16 14 8 40 40 H 1.09001 * 110.57474 * 34.68609 * 16 14 8 41 41 H 1.09003 * 109.80646 * 102.42274 * 17 16 14 42 42 H 1.08993 * 109.81778 * 223.32408 * 17 16 14 43 43 H 0.96998 * 120.00113 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2045 1.0912 8 7 4.0254 2.4040 0.9223 9 6 3.4383 3.6491 0.4437 10 6 3.6951 4.7613 1.4634 11 6 5.2121 4.8257 1.7170 12 6 5.6532 3.5480 2.4321 13 1 5.2195 3.4836 3.4300 14 6 5.2907 2.3084 1.6071 15 1 5.2809 1.4348 2.2589 16 6 6.4672 2.1894 0.6196 17 6 7.6594 2.7779 1.3978 18 7 7.1197 3.5539 2.5222 19 6 7.8623 4.1865 3.4831 20 1 7.3698 4.7347 4.2725 21 6 9.2485 4.1232 3.4424 22 7 9.8489 3.4555 2.4801 23 14 10.2616 4.9868 4.7528 24 1 9.3544 5.6636 5.7141 25 1 11.0922 3.9890 5.4739 26 1 11.1440 5.9948 4.1120 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.2568 1.8014 -1.9563 31 1 2.6605 2.7673 -1.4426 32 1 2.8828 1.0775 -1.9563 33 1 3.8897 3.9201 -0.5107 34 1 2.3642 3.5173 0.3129 35 1 3.3593 5.7153 1.0569 36 1 3.1575 4.5434 2.3862 37 1 5.4309 5.6877 2.3473 38 1 5.7527 4.9190 0.7751 39 1 6.6521 1.1450 0.3681 40 1 6.2722 2.7724 -0.2806 41 1 8.2891 1.9717 1.7740 42 1 8.2415 3.4288 0.7455 43 1 10.8174 3.4110 2.4519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049358891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:07 Heat of formation + Delta-G solvation = -65.183925 kcal Electronic energy + Delta-G solvation = -23838.779201 eV Core-core repulsion = 20498.285404 eV Total energy + Delta-G solvation = -3340.493797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.96954 -39.86739 -38.37539 -36.99119 -34.41571 -33.89258 -32.54846 -30.74960 -29.78047 -27.68160 -26.68505 -26.06180 -24.52792 -23.33383 -22.15604 -21.33624 -19.60438 -18.84617 -18.66972 -17.61410 -17.01326 -16.79396 -16.47016 -16.01468 -15.84402 -15.67208 -15.05961 -15.00695 -14.56552 -14.40139 -14.03094 -13.92054 -13.58246 -13.44669 -13.29341 -13.08721 -12.82250 -12.72019 -12.66533 -12.37428 -12.19404 -12.05590 -12.00158 -11.90790 -11.60202 -11.56819 -11.20922 -10.90576 -10.72112 -10.45002 -9.64998 -8.92095 -7.85167 -5.22264 1.45412 1.47009 1.52033 1.57034 1.73809 2.48801 2.92296 3.32339 3.41668 3.58507 3.80786 3.84642 3.91593 3.99377 4.03658 4.13744 4.17139 4.33786 4.49897 4.55679 4.58471 4.59634 4.63438 4.70924 4.79267 4.81684 4.87934 4.89794 4.94594 5.05806 5.20186 5.24852 5.36473 5.42039 5.54688 5.62228 5.65377 5.71958 6.08977 6.18215 6.40926 7.07484 7.14528 7.75085 8.39745 9.25133 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034984 B = 0.004318 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.174514 B = 6482.600647 C = 6763.395284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.077 3.923 4 H 0.123 0.877 5 C -0.174 4.174 6 C 0.496 3.504 7 O -0.578 6.578 8 N -0.581 5.581 9 C 0.095 3.905 10 C -0.122 4.122 11 C -0.121 4.121 12 C 0.157 3.843 13 H 0.046 0.954 14 C 0.153 3.847 15 H 0.057 0.943 16 C -0.135 4.135 17 C 0.191 3.809 18 N -0.616 5.616 19 C -0.235 4.235 20 H 0.086 0.914 21 C -0.066 4.066 22 N -0.952 5.952 23 Si 0.980 3.020 24 H -0.263 1.263 25 H -0.296 1.296 26 H -0.291 1.291 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.009 0.991 42 H 0.011 0.989 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.171 2.677 -8.443 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.016 3.984 4 H 0.140 0.860 5 C -0.231 4.231 6 C 0.285 3.715 7 O -0.457 6.457 8 N -0.313 5.313 9 C -0.025 4.025 10 C -0.160 4.160 11 C -0.161 4.161 12 C 0.050 3.950 13 H 0.064 0.936 14 C 0.047 3.953 15 H 0.075 0.925 16 C -0.174 4.174 17 C 0.065 3.935 18 N -0.341 5.341 19 C -0.364 4.364 20 H 0.103 0.897 21 C -0.259 4.259 22 N -0.601 5.601 23 Si 0.808 3.192 24 H -0.187 1.187 25 H -0.223 1.223 26 H -0.218 1.218 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.027 0.973 42 H 0.029 0.971 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -21.609 2.010 -8.167 23.188 hybrid contribution 1.429 0.106 0.831 1.656 sum -20.180 2.116 -7.336 21.576 Atomic orbital electron populations 1.23106 0.78474 1.04144 1.01676 1.88021 1.22121 1.26542 1.95200 1.22066 0.91381 0.86979 0.97993 0.86015 1.22422 1.04692 1.02974 0.93006 1.21472 0.87570 0.83316 0.79167 1.90685 1.70997 1.31773 1.52267 1.47054 1.19168 1.08178 1.56943 1.22158 1.00086 0.82311 0.97967 1.22029 0.94469 0.99668 0.99862 1.22110 0.96430 0.97415 1.00175 1.21001 0.84349 0.93413 0.96230 0.93608 1.20597 0.82906 0.98260 0.93511 0.92452 1.22787 0.95665 1.00276 0.98690 1.20723 0.91821 0.92969 0.87948 1.44599 1.00667 1.60029 1.28758 1.19437 0.88670 1.24799 1.03513 0.89666 1.25669 0.97660 1.01710 1.00870 1.70209 1.07922 1.47067 1.34942 0.84990 0.78519 0.77342 0.78347 1.18722 1.22301 1.21794 0.92727 0.91379 0.88887 0.88366 0.88354 0.93249 0.89862 0.86001 0.87260 0.90855 0.92996 0.92876 0.92562 0.90370 0.97252 0.97052 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.52 16 2 O -0.40 -9.88 9.89 -129.99 -1.28 -11.16 16 3 C 0.08 1.55 2.29 29.85 0.07 1.62 16 4 H 0.12 1.53 6.68 -2.39 -0.02 1.51 16 5 C -0.17 -2.50 9.13 71.98 0.66 -1.85 16 6 C 0.50 15.48 7.02 87.66 0.62 16.10 16 7 O -0.58 -24.82 15.79 15.97 0.25 -24.57 16 8 N -0.58 -16.82 2.80 -802.44 -2.25 -19.06 16 9 C 0.10 1.72 4.63 86.54 0.40 2.13 16 10 C -0.12 -2.43 6.15 30.93 0.19 -2.24 16 11 C -0.12 -3.92 5.36 30.89 0.17 -3.76 16 12 C 0.16 6.43 3.20 44.97 0.14 6.57 16 13 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 14 C 0.15 5.95 2.77 45.86 0.13 6.08 16 15 H 0.06 2.63 7.10 -2.39 -0.02 2.61 16 16 C -0.13 -5.61 6.38 31.31 0.20 -5.41 16 17 C 0.19 9.99 5.38 86.66 0.47 10.46 16 18 N -0.62 -32.08 2.93 -673.67 -1.97 -34.05 16 19 C -0.24 -13.24 10.28 84.04 0.86 -12.38 16 20 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 21 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 22 N -0.95 -58.61 10.29 21.65 0.22 -58.39 16 23 Si 0.98 46.31 29.55 68.60 2.03 48.33 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 H 0.05 0.61 8.09 -2.39 -0.02 0.59 16 28 H 0.07 0.57 7.87 -2.39 -0.02 0.56 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 0.86 7.87 -2.39 -0.02 0.84 16 31 H 0.10 1.05 5.11 -2.39 -0.01 1.04 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.33 7.41 -2.39 -0.02 1.31 16 34 H 0.12 1.21 5.13 -2.39 -0.01 1.19 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.85 7.98 -2.38 -0.02 1.83 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.01 0.55 7.25 -2.39 -0.02 0.53 16 42 H 0.01 0.65 7.60 -2.39 -0.02 0.63 16 43 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -79.24 330.83 3.58 -75.66 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 0.99 Total: 7.75 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 5.59 Total: 15.49 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -3.99 Total: -111.50 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.03 Total: -35.74 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -79.24 3.58 -75.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049358891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.481 kcal (2) G-P(sol) polarization free energy of solvation -79.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds