Wall clock time and date at job start Tue Mar 31 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99683 * 2 1 4 4 H 1.09000 * 109.47589 * 329.99892 * 3 2 1 5 5 C 1.53003 * 109.47520 * 90.00017 * 3 2 1 6 6 C 1.50707 * 109.46884 * 210.00072 * 3 2 1 7 7 O 1.21281 * 119.99871 * 351.48777 * 6 3 2 8 8 N 1.34777 * 119.99810 * 171.48989 * 6 3 2 9 9 C 1.46798 * 119.52481 * 354.70549 * 8 6 3 10 10 C 1.53476 * 107.53948 * 232.00378 * 9 8 6 11 11 C 1.52724 * 108.39529 * 301.73793 * 10 9 8 12 12 C 1.52959 * 110.88198 * 63.83947 * 11 10 9 13 13 H 1.09002 * 112.36388 * 70.71919 * 12 11 10 14 14 C 1.55031 * 107.08718 * 194.29844 * 12 11 10 15 15 N 1.47098 * 107.12517 * 92.70839 * 14 12 11 16 16 C 1.36942 * 125.64513 * 180.14399 * 15 14 12 17 17 H 1.08000 * 119.99827 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99677 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00538 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99680 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47265 * 90.00067 * 20 18 16 22 22 H 1.48500 * 109.46967 * 209.99894 * 20 18 16 23 23 H 1.48498 * 109.47368 * 329.99587 * 20 18 16 24 24 C 1.47674 * 108.70751 * 0.15281 * 15 14 12 25 25 C 1.45018 * 119.51785 * 174.72691 * 8 6 3 26 26 H 1.09000 * 110.20100 * 12.29581 * 25 8 6 27 27 H 1.09006 * 109.47310 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47492 * 300.00152 * 1 2 3 29 29 H 1.08999 * 109.47288 * 60.00217 * 1 2 3 30 30 H 1.08995 * 109.47522 * 185.27786 * 5 3 2 31 31 H 1.08994 * 109.46626 * 305.28458 * 5 3 2 32 32 H 1.09004 * 109.46870 * 65.28116 * 5 3 2 33 33 H 1.08998 * 109.84412 * 112.49372 * 9 8 6 34 34 H 1.09003 * 109.89577 * 351.54130 * 9 8 6 35 35 H 1.08997 * 109.67743 * 182.00715 * 10 9 8 36 36 H 1.09002 * 109.71263 * 61.47680 * 10 9 8 37 37 H 1.09009 * 109.19599 * 303.48183 * 11 10 9 38 38 H 1.08992 * 109.20065 * 184.20607 * 11 10 9 39 39 H 1.09005 * 109.90263 * 212.07745 * 14 12 11 40 40 H 1.08992 * 109.90611 * 333.32597 * 14 12 11 41 41 H 0.97000 * 120.00694 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.45147 * 264.75342 * 24 15 14 43 43 H 1.09002 * 110.45171 * 142.20924 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2639 -0.7105 7 8 3.8198 0.1989 -1.0348 8 7 3.9919 2.4102 -0.9853 9 6 3.3486 3.6972 -0.6942 10 6 3.4108 4.5450 -1.9720 11 6 4.8756 4.7046 -2.3737 12 6 5.4938 3.3516 -2.7298 13 1 5.1094 2.9543 -3.6692 14 6 7.0313 3.5481 -2.7636 15 7 7.5404 3.2127 -1.4249 16 6 8.8524 3.2592 -1.0353 17 1 9.6140 3.5623 -1.7385 18 6 9.2032 2.9168 0.2633 19 7 8.2750 2.5479 1.1203 20 14 10.9930 2.9795 0.7945 21 1 11.3031 4.3288 1.3311 22 1 11.2326 1.9607 1.8481 23 1 11.8662 2.6984 -0.3733 24 6 6.4024 2.8175 -0.5707 25 6 5.3201 2.3544 -1.5649 26 1 5.5392 1.3429 -1.9070 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.5729 2.8019 1.4439 31 1 1.2729 1.7120 1.9828 32 1 2.9550 1.1323 1.9283 33 1 3.8806 4.2029 0.1116 34 1 2.3094 3.5360 -0.4073 35 1 2.9727 5.5252 -1.7838 36 1 2.8633 4.0457 -2.7715 37 1 5.4290 5.1442 -1.5437 38 1 4.9404 5.3667 -3.2371 39 1 7.4740 2.8841 -3.5061 40 1 7.2677 4.5851 -3.0017 41 1 8.5201 2.3089 2.0279 42 1 6.0475 3.6695 0.0091 43 1 6.6883 1.9988 0.0897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049988100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:12 Heat of formation + Delta-G solvation = -45.131464 kcal Electronic energy + Delta-G solvation = -23978.664087 eV Core-core repulsion = 20639.039830 eV Total energy + Delta-G solvation = -3339.624257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.44480 -38.54605 -37.09843 -35.33620 -33.05699 -31.90562 -31.40808 -29.24410 -27.36818 -26.89548 -25.50545 -24.52525 -23.22064 -22.04762 -20.39767 -19.81790 -18.11942 -17.43484 -16.90620 -16.51458 -15.68838 -15.29645 -14.95814 -14.58449 -14.35653 -14.26062 -13.85751 -13.43719 -13.29352 -13.01905 -12.68932 -12.46030 -12.28954 -12.12079 -12.00123 -11.80296 -11.51176 -11.20216 -11.10243 -11.05539 -10.83274 -10.65108 -10.29291 -10.24128 -9.92946 -9.86811 -9.72601 -9.64457 -9.15976 -8.62747 -8.10712 -6.81988 -5.63724 -3.05732 2.89481 3.01323 3.41737 3.46795 3.49187 3.91677 4.50925 4.57175 4.71166 4.94493 4.95440 5.08328 5.12931 5.16524 5.23896 5.34961 5.47501 5.50331 5.52391 5.56774 5.62745 5.63605 5.69320 5.91195 5.94567 6.06887 6.11431 6.13430 6.23351 6.29160 6.43452 6.65198 6.70439 6.88603 6.92890 7.06394 7.45123 7.63361 7.77358 7.88752 8.35129 8.54304 9.22068 9.83480 10.47440 11.40393 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.005321 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.732442 B = 5260.727033 C = 6008.312446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.072 3.928 4 H 0.081 0.919 5 C -0.173 4.173 6 C 0.511 3.489 7 O -0.521 6.521 8 N -0.586 5.586 9 C 0.102 3.898 10 C -0.132 4.132 11 C -0.109 4.109 12 C -0.109 4.109 13 H 0.076 0.924 14 C 0.139 3.861 15 N -0.602 5.602 16 C -0.224 4.224 17 H 0.079 0.921 18 C -0.009 4.009 19 N -0.920 5.920 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.157 3.843 25 C 0.116 3.884 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.023 0.977 40 H 0.027 0.973 41 H 0.252 0.748 42 H 0.015 0.985 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.975 3.559 -2.889 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.010 3.990 4 H 0.099 0.901 5 C -0.230 4.230 6 C 0.298 3.702 7 O -0.396 6.396 8 N -0.319 5.319 9 C -0.021 4.021 10 C -0.170 4.170 11 C -0.147 4.147 12 C -0.128 4.128 13 H 0.094 0.906 14 C 0.013 3.987 15 N -0.329 5.329 16 C -0.352 4.352 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.031 3.969 25 C 0.012 3.988 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.449 2.765 -2.880 16.926 hybrid contribution 0.659 0.456 0.329 0.867 sum -15.790 3.221 -2.551 16.315 Atomic orbital electron populations 1.22855 0.81103 1.03021 0.99793 1.88071 1.19213 1.25511 1.94935 1.21968 0.93824 0.86239 0.96945 0.90094 1.22278 1.03283 1.02700 0.94768 1.20286 0.86254 0.84174 0.79535 1.90704 1.67837 1.29348 1.51689 1.47316 1.17181 1.05119 1.62316 1.21943 0.97373 0.84624 0.98118 1.21889 0.98085 0.99590 0.97444 1.21480 0.94623 0.96837 1.01763 1.22432 0.96994 0.95401 0.97992 0.90587 1.21527 0.90281 0.97474 0.89423 1.44430 1.03306 1.78649 1.06468 1.19073 0.82147 1.38637 0.95375 0.90345 1.24790 0.97875 1.01693 0.96150 1.69806 1.30495 1.51687 1.04890 0.86075 0.84062 0.77238 0.78136 1.21676 1.21648 1.20666 1.21982 0.83826 0.99795 0.91327 1.22046 0.81385 1.00516 0.94869 0.88492 0.89323 0.93964 0.94064 0.90465 0.91492 0.90731 0.90529 0.90281 0.90995 0.91818 0.90792 0.92290 0.95893 0.95500 0.93711 0.96713 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.36 -5.34 9.90 -55.00 -0.54 -5.88 16 3 C 0.07 0.97 2.28 -27.88 -0.06 0.91 16 4 H 0.08 0.84 6.54 -51.93 -0.34 0.50 16 5 C -0.17 -2.04 9.21 37.16 0.34 -1.70 16 6 C 0.51 9.27 7.01 -10.98 -0.08 9.20 16 7 O -0.52 -11.92 15.85 -14.21 -0.23 -12.14 16 8 N -0.59 -10.00 2.74 -165.21 -0.45 -10.45 16 9 C 0.10 1.31 4.77 -3.63 -0.02 1.29 16 10 C -0.13 -1.55 6.11 -26.63 -0.16 -1.71 16 11 C -0.11 -1.62 4.65 -26.89 -0.13 -1.74 16 12 C -0.11 -1.92 3.60 -88.88 -0.32 -2.24 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 14 C 0.14 2.92 6.61 -2.64 -0.02 2.90 16 15 N -0.60 -15.51 3.40 -169.87 -0.58 -16.09 16 16 C -0.22 -6.30 10.28 -15.06 -0.15 -6.45 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.23 10.10 55.49 0.56 -26.67 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.16 3.85 5.04 -2.83 -0.01 3.83 16 25 C 0.12 2.37 3.05 -67.46 -0.21 2.16 16 26 H 0.10 2.26 6.95 -51.93 -0.36 1.90 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.32 7.78 -51.93 -0.40 -0.08 16 29 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.08 0.83 6.22 -51.93 -0.32 0.50 16 31 H 0.07 0.62 7.78 -51.93 -0.40 0.22 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.04 7.60 -51.93 -0.39 0.64 16 34 H 0.08 0.76 4.99 -51.93 -0.26 0.50 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.27 7.21 -51.92 -0.37 0.90 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.03 0.55 7.74 -51.93 -0.40 0.15 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 42 H 0.01 0.38 6.92 -51.93 -0.36 0.02 16 43 H 0.11 3.05 5.94 -51.93 -0.31 2.74 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -33.95 328.62 -7.98 -41.94 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.85 Total: -0.42 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 0.18 Total: 7.46 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.47 Total: -53.21 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.77 Total: -18.02 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.95 -7.98 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049988100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.196 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds