Wall clock time and date at job start Tue Mar 31 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 114.00356 * 2 1 4 4 H 1.09000 * 109.46630 * 29.99707 * 3 2 1 5 5 C 1.53001 * 109.47025 * 270.00246 * 3 2 1 6 6 C 1.50697 * 109.47278 * 149.99788 * 3 2 1 7 7 O 1.21284 * 119.99879 * 5.00504 * 6 3 2 8 8 N 1.34776 * 119.99856 * 185.00108 * 6 3 2 9 9 C 1.47666 * 134.45946 * 180.02562 * 8 6 3 10 10 C 1.53506 * 85.98338 * 204.31955 * 9 8 6 11 11 C 1.47671 * 134.45863 * 0.02562 * 8 6 3 12 12 C 1.52669 * 113.57504 * 90.99991 * 10 9 8 13 13 C 1.53324 * 109.21618 * 188.89505 * 12 10 9 14 14 N 1.46884 * 108.76515 * 307.56955 * 13 12 10 15 15 C 1.36940 * 120.49617 * 235.62940 * 14 13 12 16 16 H 1.08000 * 119.99861 * 28.40769 * 15 14 13 17 17 C 1.38812 * 120.00113 * 208.40514 * 15 14 13 18 18 N 1.31615 * 119.99692 * 17.64043 * 17 15 14 19 19 Si 1.86794 * 119.99923 * 197.63264 * 17 15 14 20 20 H 1.48502 * 109.46912 * 90.00454 * 19 17 15 21 21 H 1.48497 * 109.47357 * 210.00169 * 19 17 15 22 22 H 1.48502 * 109.47673 * 330.00522 * 19 17 15 23 23 C 1.46895 * 119.00846 * 55.60742 * 14 13 12 24 24 C 1.52801 * 113.65666 * 222.22553 * 10 9 8 25 25 H 1.08993 * 109.47170 * 300.00021 * 1 2 3 26 26 H 1.09002 * 109.46326 * 60.00117 * 1 2 3 27 27 H 1.08996 * 109.46835 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47337 * 59.99232 * 5 3 2 29 29 H 1.08999 * 109.47060 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.46976 * 299.99248 * 5 3 2 31 31 H 1.08998 * 113.78859 * 90.04628 * 9 8 6 32 32 H 1.09006 * 113.78620 * 318.58888 * 9 8 6 33 33 H 1.09000 * 113.78888 * 41.40919 * 11 8 6 34 34 H 1.08995 * 113.78601 * 269.94524 * 11 8 6 35 35 H 1.08994 * 109.52299 * 68.95203 * 12 10 9 36 36 H 1.09003 * 109.51992 * 308.83210 * 12 10 9 37 37 H 1.09003 * 109.58914 * 67.35232 * 13 12 10 38 38 H 1.09003 * 109.58674 * 187.64053 * 13 12 10 39 39 H 0.97008 * 119.99796 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.58790 * 64.17487 * 23 14 13 41 41 H 1.09007 * 109.58785 * 184.60746 * 23 14 13 42 42 H 1.09000 * 109.50343 * 51.23869 * 24 10 9 43 43 H 1.09000 * 109.55548 * 291.09916 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 8 3.7897 0.2044 1.0914 8 7 4.0255 2.4040 0.9224 9 6 5.3154 2.7305 1.5627 10 6 4.7282 4.1316 1.7831 11 6 3.7896 3.8273 0.6074 12 6 4.0049 4.2873 3.1185 13 6 3.2731 5.6345 3.1420 14 7 4.2274 6.6966 2.7974 15 6 4.4195 7.7586 3.6404 16 1 4.2667 7.6391 4.7028 17 6 4.8106 8.9885 3.1293 18 7 4.6653 9.2443 1.8465 19 14 5.5428 10.2805 4.2624 20 1 7.0174 10.1133 4.3160 21 1 5.2166 11.6340 3.7459 22 1 4.9767 10.1214 5.6260 23 6 4.9729 6.6024 1.5352 24 6 5.7167 5.2621 1.5006 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.2569 1.8014 -1.9564 29 1 2.6607 2.7673 -1.4425 30 1 2.8830 1.0775 -1.9563 31 1 6.1633 2.7117 0.8780 32 1 5.4997 2.1807 2.4857 33 1 2.7612 4.1493 0.7711 34 1 4.1842 4.1345 -0.3611 35 1 4.7298 4.2523 3.9317 36 1 3.2837 3.4789 3.2385 37 1 2.4615 5.6222 2.4144 38 1 2.8683 5.8131 4.1382 39 1 4.9389 10.1037 1.4893 40 1 4.2794 6.6573 0.6961 41 1 5.6908 7.4203 1.4729 42 1 6.1625 5.1182 0.5164 43 1 6.4996 5.2602 2.2589 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050453912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:48 Heat of formation + Delta-G solvation = -23.629939 kcal Electronic energy + Delta-G solvation = -23320.010790 eV Core-core repulsion = 19981.318909 eV Total energy + Delta-G solvation = -3338.691881 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.74306 -38.94850 -37.29325 -35.83635 -32.69700 -31.83005 -30.50138 -29.68810 -27.15934 -26.98765 -26.18078 -24.50785 -23.34302 -22.39519 -20.84052 -19.23864 -18.12370 -17.32838 -16.82781 -16.60250 -15.79353 -15.51876 -15.14213 -14.90002 -14.23916 -14.02238 -13.83875 -13.58594 -13.43618 -13.09882 -12.87435 -12.77314 -12.46213 -12.23700 -12.03684 -11.83447 -11.69444 -11.45364 -11.31136 -11.06714 -10.77670 -10.53703 -10.33663 -10.23279 -10.08466 -9.88918 -9.68386 -9.66543 -9.25355 -8.57118 -8.49790 -6.71693 -5.84090 -3.26719 2.59085 2.72091 3.35063 3.42761 3.43335 3.70605 4.36279 4.45740 4.60416 4.72763 4.82078 5.05555 5.08682 5.16076 5.18463 5.34007 5.36282 5.42339 5.46487 5.50162 5.53680 5.57507 5.62880 5.76102 5.84327 5.89470 6.00358 6.06511 6.21358 6.43326 6.52536 6.57327 6.60748 6.76737 6.86510 6.88986 7.27602 7.58801 7.75879 7.78462 8.23482 8.40923 9.16818 9.79933 10.35865 11.23990 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033132 B = 0.003825 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.901748 B = 7317.796967 C = 7465.547311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.074 3.926 4 H 0.085 0.915 5 C -0.169 4.169 6 C 0.535 3.465 7 O -0.531 6.531 8 N -0.638 5.638 9 C 0.112 3.888 10 C -0.073 4.073 11 C 0.108 3.892 12 C -0.109 4.109 13 C 0.148 3.852 14 N -0.590 5.590 15 C -0.254 4.254 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.901 3.099 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.171 3.829 24 C -0.128 4.128 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.017 0.983 38 H 0.055 0.945 39 H 0.254 0.746 40 H 0.018 0.982 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 -11.726 -5.562 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.013 3.987 4 H 0.103 0.897 5 C -0.226 4.226 6 C 0.323 3.677 7 O -0.408 6.408 8 N -0.375 5.375 9 C -0.009 4.009 10 C -0.074 4.074 11 C -0.015 4.015 12 C -0.148 4.148 13 C 0.021 3.979 14 N -0.313 5.313 15 C -0.383 4.383 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.731 3.269 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.045 3.955 24 C -0.167 4.167 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.108 0.892 42 H 0.072 0.928 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.521 -12.502 -5.470 14.376 hybrid contribution 0.126 0.933 0.378 1.014 sum -4.395 -11.569 -5.092 13.383 Atomic orbital electron populations 1.22874 0.80706 1.03085 1.00122 1.88029 1.19599 1.25425 1.94966 1.21848 0.93566 0.86504 0.96769 0.89676 1.22209 1.03276 1.02295 0.94858 1.19995 0.86001 0.82501 0.79189 1.90697 1.70004 1.28994 1.51061 1.50060 1.22369 1.06409 1.58679 1.23392 0.86273 0.94086 0.97196 1.21998 0.96114 0.93652 0.95660 1.23413 1.01386 0.77586 0.99071 1.21778 0.99228 0.99196 0.94621 1.20877 0.91211 0.87349 0.98461 1.44017 1.43435 1.22157 1.21656 1.19204 1.42112 0.87823 0.89186 0.91718 1.25022 1.01644 0.96744 0.96073 1.70024 1.49520 1.22885 1.12184 0.86306 0.79354 0.80943 0.80260 1.21427 1.21803 1.20451 1.20788 0.94580 0.93006 0.87099 1.22170 0.97564 0.96974 1.00042 0.93765 0.93848 0.89240 0.91273 0.90647 0.91280 0.89937 0.90375 0.89964 0.89492 0.91631 0.93020 0.96538 0.92628 0.93628 0.96370 0.89179 0.92812 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.36 -4.95 9.89 -55.09 -0.54 -5.49 16 3 C 0.07 0.93 2.92 -27.88 -0.08 0.85 16 4 H 0.09 0.92 7.79 -51.93 -0.40 0.52 16 5 C -0.17 -1.71 9.44 37.16 0.35 -1.36 16 6 C 0.53 8.46 7.41 -10.99 -0.08 8.38 16 7 O -0.53 -10.59 17.24 -14.31 -0.25 -10.83 16 8 N -0.64 -9.10 3.42 -180.19 -0.62 -9.71 16 9 C 0.11 1.56 7.97 -3.15 -0.03 1.54 16 10 C -0.07 -1.09 0.78 -154.36 -0.12 -1.21 16 11 C 0.11 1.42 6.06 -3.16 -0.02 1.40 16 12 C -0.11 -1.76 5.20 -26.73 -0.14 -1.90 16 13 C 0.15 2.85 6.38 -3.66 -0.02 2.82 16 14 N -0.59 -13.69 2.96 -172.21 -0.51 -14.20 16 15 C -0.25 -6.63 9.56 -15.06 -0.14 -6.77 16 16 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 17 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 18 N -0.90 -24.93 11.21 55.49 0.62 -24.30 16 19 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 C 0.17 3.67 5.25 -3.66 -0.02 3.66 16 24 C -0.13 -2.12 5.26 -26.67 -0.14 -2.26 16 25 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 26 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 29 H 0.07 0.71 6.65 -51.93 -0.35 0.37 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 32 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 33 H 0.08 1.06 7.44 -51.93 -0.39 0.67 16 34 H 0.09 1.04 7.98 -51.93 -0.41 0.62 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.79 8.01 -51.93 -0.42 0.37 16 37 H 0.02 0.32 7.52 -51.93 -0.39 -0.07 16 38 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 39 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.02 0.40 8.09 -51.93 -0.42 -0.02 16 41 H 0.09 2.23 5.97 -51.93 -0.31 1.92 16 42 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -31.42 341.83 -7.85 -39.27 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -7.24 Total: -2.31 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 0.57 Total: 6.51 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.50 Total: -48.22 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.79 Total: -16.33 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.42 -7.85 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050453912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.640 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds