Wall clock time and date at job start Tue Mar 31 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 114.00356 * 2 1 4 4 H 1.09000 * 109.46630 * 29.99707 * 3 2 1 5 5 C 1.53001 * 109.47025 * 270.00246 * 3 2 1 6 6 C 1.50697 * 109.47278 * 149.99788 * 3 2 1 7 7 O 1.21284 * 119.99879 * 5.00504 * 6 3 2 8 8 N 1.34776 * 119.99856 * 185.00108 * 6 3 2 9 9 C 1.47666 * 134.45946 * 180.02562 * 8 6 3 10 10 C 1.53506 * 85.98338 * 204.31955 * 9 8 6 11 11 C 1.47671 * 134.45863 * 0.02562 * 8 6 3 12 12 C 1.52669 * 113.57504 * 90.99991 * 10 9 8 13 13 C 1.53324 * 109.21618 * 188.89505 * 12 10 9 14 14 N 1.46884 * 108.76515 * 307.56955 * 13 12 10 15 15 C 1.36940 * 120.49617 * 235.62940 * 14 13 12 16 16 H 1.08000 * 119.99861 * 28.40769 * 15 14 13 17 17 C 1.38812 * 120.00113 * 208.40514 * 15 14 13 18 18 N 1.31615 * 119.99692 * 17.64043 * 17 15 14 19 19 Si 1.86794 * 119.99923 * 197.63264 * 17 15 14 20 20 H 1.48502 * 109.46912 * 90.00454 * 19 17 15 21 21 H 1.48497 * 109.47357 * 210.00169 * 19 17 15 22 22 H 1.48502 * 109.47673 * 330.00522 * 19 17 15 23 23 C 1.46895 * 119.00846 * 55.60742 * 14 13 12 24 24 C 1.52801 * 113.65666 * 222.22553 * 10 9 8 25 25 H 1.08993 * 109.47170 * 300.00021 * 1 2 3 26 26 H 1.09002 * 109.46326 * 60.00117 * 1 2 3 27 27 H 1.08996 * 109.46835 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47337 * 59.99232 * 5 3 2 29 29 H 1.08999 * 109.47060 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.46976 * 299.99248 * 5 3 2 31 31 H 1.08998 * 113.78859 * 90.04628 * 9 8 6 32 32 H 1.09006 * 113.78620 * 318.58888 * 9 8 6 33 33 H 1.09000 * 113.78888 * 41.40919 * 11 8 6 34 34 H 1.08995 * 113.78601 * 269.94524 * 11 8 6 35 35 H 1.08994 * 109.52299 * 68.95203 * 12 10 9 36 36 H 1.09003 * 109.51992 * 308.83210 * 12 10 9 37 37 H 1.09003 * 109.58914 * 67.35232 * 13 12 10 38 38 H 1.09003 * 109.58674 * 187.64053 * 13 12 10 39 39 H 0.97008 * 119.99796 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.58790 * 64.17487 * 23 14 13 41 41 H 1.09007 * 109.58785 * 184.60746 * 23 14 13 42 42 H 1.09000 * 109.50343 * 51.23869 * 24 10 9 43 43 H 1.09000 * 109.55548 * 291.09916 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 8 3.7897 0.2044 1.0914 8 7 4.0255 2.4040 0.9224 9 6 5.3154 2.7305 1.5627 10 6 4.7282 4.1316 1.7831 11 6 3.7896 3.8273 0.6074 12 6 4.0049 4.2873 3.1185 13 6 3.2731 5.6345 3.1420 14 7 4.2274 6.6966 2.7974 15 6 4.4195 7.7586 3.6404 16 1 4.2667 7.6391 4.7028 17 6 4.8106 8.9885 3.1293 18 7 4.6653 9.2443 1.8465 19 14 5.5428 10.2805 4.2624 20 1 7.0174 10.1133 4.3160 21 1 5.2166 11.6340 3.7459 22 1 4.9767 10.1214 5.6260 23 6 4.9729 6.6024 1.5352 24 6 5.7167 5.2621 1.5006 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.2569 1.8014 -1.9564 29 1 2.6607 2.7673 -1.4425 30 1 2.8830 1.0775 -1.9563 31 1 6.1633 2.7117 0.8780 32 1 5.4997 2.1807 2.4857 33 1 2.7612 4.1493 0.7711 34 1 4.1842 4.1345 -0.3611 35 1 4.7298 4.2523 3.9317 36 1 3.2837 3.4789 3.2385 37 1 2.4615 5.6222 2.4144 38 1 2.8683 5.8131 4.1382 39 1 4.9389 10.1037 1.4893 40 1 4.2794 6.6573 0.6961 41 1 5.6908 7.4203 1.4729 42 1 6.1625 5.1182 0.5164 43 1 6.4996 5.2602 2.2589 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050453912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:48 Heat of formation + Delta-G solvation = -42.833392 kcal Electronic energy + Delta-G solvation = -23320.843514 eV Core-core repulsion = 19981.318909 eV Total energy + Delta-G solvation = -3339.524605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.93444 -40.07446 -38.41021 -37.41071 -34.29682 -33.02874 -31.92530 -31.23979 -28.55544 -27.72662 -27.27075 -26.11037 -24.46999 -23.89459 -22.38835 -20.41846 -19.54905 -18.47490 -18.15858 -17.82129 -16.94559 -16.78249 -16.60287 -16.09407 -15.63168 -15.34717 -15.23202 -14.96167 -14.77991 -14.36825 -13.99320 -13.93061 -13.59682 -13.36833 -13.22099 -13.02138 -12.97055 -12.87579 -12.73223 -12.55982 -12.23328 -12.16436 -11.96117 -11.78213 -11.37848 -11.23921 -11.21187 -10.94792 -10.51794 -10.39910 -9.73611 -8.59776 -7.82914 -5.26972 1.47925 1.49320 1.51922 1.59032 1.61645 2.54959 2.81188 3.26977 3.36441 3.46819 3.73763 3.83393 3.88891 4.01056 4.03702 4.23504 4.42441 4.44964 4.52385 4.52448 4.57747 4.60532 4.63830 4.71621 4.73561 4.82127 4.83297 4.86389 4.97571 5.08009 5.11577 5.15560 5.21976 5.37239 5.40992 5.59824 5.71148 5.86414 6.06264 6.45626 6.64222 7.06794 7.21999 7.93906 8.43047 9.22102 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033132 B = 0.003825 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.901748 B = 7317.796967 C = 7465.547311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.396 6.396 3 C 0.075 3.925 4 H 0.104 0.896 5 C -0.162 4.162 6 C 0.528 3.472 7 O -0.582 6.582 8 N -0.634 5.634 9 C 0.115 3.885 10 C -0.074 4.074 11 C 0.115 3.885 12 C -0.096 4.096 13 C 0.146 3.854 14 N -0.608 5.608 15 C -0.262 4.262 16 H 0.060 0.940 17 C -0.044 4.044 18 N -0.928 5.928 19 Si 0.958 3.042 20 H -0.287 1.287 21 H -0.296 1.296 22 H -0.273 1.273 23 C 0.177 3.823 24 C -0.112 4.112 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.024 0.976 38 H 0.048 0.952 39 H 0.249 0.751 40 H 0.010 0.990 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 -12.277 -6.238 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.015 3.985 4 H 0.122 0.878 5 C -0.220 4.220 6 C 0.318 3.682 7 O -0.462 6.462 8 N -0.370 5.370 9 C -0.007 4.007 10 C -0.075 4.075 11 C -0.006 4.006 12 C -0.135 4.135 13 C 0.021 3.979 14 N -0.332 5.332 15 C -0.392 4.392 16 H 0.078 0.922 17 C -0.239 4.239 18 N -0.574 5.574 19 Si 0.787 3.213 20 H -0.214 1.214 21 H -0.223 1.223 22 H -0.198 1.198 23 C 0.051 3.949 24 C -0.152 4.152 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.109 -13.052 -6.142 15.304 hybrid contribution 0.256 1.093 0.621 1.283 sum -4.853 -11.959 -5.521 14.038 Atomic orbital electron populations 1.23101 0.78583 1.04291 1.01402 1.87989 1.21999 1.26249 1.95200 1.21940 0.91978 0.86725 0.97892 0.87846 1.22188 1.04362 1.02211 0.93224 1.20679 0.86996 0.81907 0.78596 1.90667 1.71426 1.30769 1.53331 1.50079 1.22291 1.06599 1.58008 1.23407 0.86917 0.92764 0.97616 1.21876 0.96356 0.93582 0.95724 1.23497 1.01521 0.76480 0.99140 1.21590 0.99080 0.97519 0.95354 1.20975 0.91078 0.87708 0.98157 1.44263 1.44806 1.22316 1.21778 1.19458 1.41381 0.88804 0.89582 0.92199 1.25636 1.02576 0.98481 0.97255 1.70147 1.50775 1.23031 1.13479 0.85405 0.78447 0.78497 0.78913 1.21378 1.22274 1.19785 1.20628 0.93740 0.94358 0.86171 1.21945 0.97119 0.94743 1.01374 0.93123 0.91834 0.88245 0.89080 0.89744 0.92410 0.88023 0.90902 0.89189 0.87408 0.92467 0.91700 0.95815 0.93350 0.94140 0.97187 0.92871 0.90086 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.40 -10.21 9.89 -129.99 -1.29 -11.49 16 3 C 0.08 1.73 2.92 29.85 0.09 1.81 16 4 H 0.10 1.94 7.79 -2.39 -0.02 1.92 16 5 C -0.16 -2.83 9.44 71.98 0.68 -2.15 16 6 C 0.53 15.88 7.41 87.66 0.65 16.53 16 7 O -0.58 -22.97 17.24 15.95 0.27 -22.70 16 8 N -0.63 -16.53 3.42 -842.39 -2.88 -19.42 16 9 C 0.11 2.92 7.97 86.32 0.69 3.61 16 10 C -0.07 -2.04 0.78 -51.99 -0.04 -2.08 16 11 C 0.12 2.67 6.06 86.31 0.52 3.19 16 12 C -0.10 -2.96 5.20 30.59 0.16 -2.80 16 13 C 0.15 5.50 6.38 86.41 0.55 6.05 16 14 N -0.61 -28.09 2.96 -698.75 -2.07 -30.16 16 15 C -0.26 -13.75 9.56 84.03 0.80 -12.94 16 16 H 0.06 3.13 7.89 -2.91 -0.02 3.11 16 17 C -0.04 -2.33 4.90 84.86 0.42 -1.91 16 18 N -0.93 -51.99 11.21 21.65 0.24 -51.74 16 19 Si 0.96 43.41 29.59 68.60 2.03 45.44 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 23 C 0.18 7.51 5.25 86.41 0.45 7.96 16 24 C -0.11 -3.53 5.26 30.64 0.16 -3.37 16 25 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 26 H 0.06 0.74 7.87 -2.39 -0.02 0.72 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.19 7.87 -2.39 -0.02 1.17 16 29 H 0.08 1.30 6.65 -2.39 -0.02 1.29 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 2.24 8.09 -2.39 -0.02 2.22 16 32 H 0.07 1.96 8.09 -2.38 -0.02 1.94 16 33 H 0.09 2.00 7.44 -2.39 -0.02 1.98 16 34 H 0.11 2.13 7.98 -2.39 -0.02 2.11 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.84 8.01 -2.39 -0.02 1.82 16 37 H 0.02 0.87 7.52 -2.39 -0.02 0.85 16 38 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 39 H 0.25 13.61 8.31 -92.70 -0.77 12.84 16 40 H 0.01 0.44 8.09 -2.39 -0.02 0.42 16 41 H 0.05 2.66 5.97 -2.38 -0.01 2.65 16 42 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -68.72 341.83 3.64 -65.08 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.97 Total: 9.52 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 6.36 Total: 15.47 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -4.71 Total: -101.32 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -1.01 Total: -34.19 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.72 3.64 -65.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050453912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.246 kcal (2) G-P(sol) polarization free energy of solvation -68.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds