Wall clock time and date at job start Tue Mar 31 2020 05:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.90821 * 2 1 4 4 C 1.54899 * 111.00639 * 236.09846 * 2 1 3 5 5 N 1.47428 * 104.83176 * 204.91119 * 4 2 1 6 6 C 1.34776 * 125.64769 * 204.08830 * 5 4 2 7 7 O 1.21277 * 120.00472 * 5.08390 * 6 5 4 8 8 C 1.50705 * 119.99608 * 185.07693 * 6 5 4 9 9 C 1.53180 * 109.53921 * 145.19588 * 8 6 5 10 10 C 1.53096 * 109.21028 * 176.87859 * 9 8 6 11 11 O 1.42903 * 109.41967 * 302.35861 * 10 9 8 12 12 C 1.42910 * 114.09455 * 61.15580 * 11 10 9 13 13 C 1.53088 * 109.41709 * 298.84791 * 12 11 10 14 14 C 1.47025 * 108.69966 * 24.35582 * 5 4 2 15 15 C 1.54331 * 107.26580 * 358.58564 * 14 5 4 16 16 H 1.09000 * 110.99876 * 219.60078 * 15 14 5 17 17 N 1.46496 * 110.51826 * 96.45309 * 15 14 5 18 18 C 1.36942 * 120.00019 * 91.49421 * 17 15 14 19 19 H 1.08001 * 119.99964 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00040 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99958 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99906 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47379 * 89.99724 * 22 20 18 24 24 H 1.48505 * 109.47123 * 210.00059 * 22 20 18 25 25 H 1.48503 * 109.47001 * 330.00007 * 22 20 18 26 26 H 1.09002 * 109.46302 * 182.44780 * 1 2 3 27 27 H 1.08995 * 109.47172 * 302.44963 * 1 2 3 28 28 H 1.08999 * 109.46936 * 62.45499 * 1 2 3 29 29 H 1.09006 * 110.37377 * 86.07546 * 4 2 1 30 30 H 1.09001 * 110.46558 * 323.79712 * 4 2 1 31 31 H 1.08997 * 109.61774 * 24.97866 * 8 6 5 32 32 H 1.09006 * 109.52386 * 56.94459 * 9 8 6 33 33 H 1.08999 * 109.52504 * 296.81591 * 9 8 6 34 34 H 1.08994 * 109.48187 * 62.34363 * 10 9 8 35 35 H 1.09007 * 109.48033 * 182.36650 * 10 9 8 36 36 H 1.09004 * 109.47577 * 58.82761 * 12 11 10 37 37 H 1.08991 * 109.47786 * 178.84896 * 12 11 10 38 38 H 1.09001 * 109.51993 * 177.51204 * 13 12 11 39 39 H 1.09003 * 109.52045 * 297.63718 * 13 12 11 40 40 H 1.08998 * 109.88132 * 118.13028 * 14 5 4 41 41 H 1.08996 * 109.87761 * 239.29419 * 14 5 4 42 42 H 0.96997 * 120.00167 * 271.50324 * 17 15 14 43 43 H 0.97001 * 119.99590 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 3.4273 -1.2429 -0.7732 6 6 4.4478 -1.5614 -1.5939 7 8 4.3318 -1.4124 -2.7919 8 6 5.7332 -2.1025 -1.0229 9 6 6.3296 -3.1314 -1.9883 10 6 7.6730 -3.6184 -1.4387 11 8 8.5454 -2.5012 -1.2576 12 6 8.0625 -1.5285 -0.3286 13 6 6.7349 -0.9575 -0.8336 14 6 3.4658 -1.2791 0.6961 15 6 2.0862 -0.8077 1.2023 16 1 2.1892 -0.1705 2.0805 17 7 1.2269 -1.9572 1.4963 18 6 1.2060 -2.4917 2.7569 19 1 1.8226 -2.0656 3.5345 20 6 0.3922 -3.5813 3.0354 21 7 0.3717 -4.0947 4.2472 22 14 -0.6738 -4.3188 1.6904 23 1 0.0854 -5.3817 0.9840 24 1 -1.8985 -4.9030 2.2938 25 1 -1.0558 -3.2579 0.7240 26 1 -0.3632 -1.0268 0.0439 27 1 -0.3633 0.5514 0.8672 28 1 -0.3633 0.4752 -0.9112 29 1 2.1561 -0.1720 -2.0837 30 1 1.4527 -1.6704 -1.4043 31 1 5.5356 -2.5765 -0.0614 32 1 6.4811 -2.6701 -2.9643 33 1 5.6483 -3.9765 -2.0867 34 1 7.5154 -4.1154 -0.4816 35 1 8.1212 -4.3194 -2.1429 36 1 7.9100 -1.9982 0.6431 37 1 8.7916 -0.7239 -0.2330 38 1 6.3430 -0.2478 -0.1050 39 1 6.8947 -0.4513 -1.7856 40 1 3.6602 -2.2961 1.0368 41 1 4.2424 -0.6081 1.0631 42 1 0.6729 -2.3398 0.7981 43 1 -0.1973 -4.8558 4.4418 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054321300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:36 Heat of formation + Delta-G solvation = -93.761972 kcal Electronic energy + Delta-G solvation = -23385.639649 eV Core-core repulsion = 20043.906616 eV Total energy + Delta-G solvation = -3341.733034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.59047 -40.06920 -38.90772 -35.81688 -34.83037 -33.83614 -32.60439 -32.10435 -29.68967 -28.22111 -26.17717 -25.43612 -24.56862 -23.53472 -21.69357 -20.89881 -20.03318 -19.82252 -18.24081 -17.53931 -17.06276 -16.96898 -16.41549 -16.25011 -15.93667 -15.72266 -15.45485 -14.81178 -14.70314 -14.62274 -14.45000 -14.02179 -13.62930 -13.53742 -13.30603 -13.21867 -13.08812 -12.89321 -12.58553 -12.32434 -12.29012 -12.12376 -11.95364 -11.75369 -11.61970 -11.55685 -11.43063 -11.05607 -10.94837 -10.46244 -9.70462 -9.32553 -8.01526 -5.33946 1.35554 1.37149 1.44051 1.49446 1.95593 2.46908 2.93791 3.29185 3.31447 3.54726 3.61814 3.71536 3.73779 3.84061 3.97420 4.01379 4.17887 4.26840 4.35893 4.46919 4.53557 4.54416 4.60473 4.62276 4.65270 4.73942 4.78887 4.80985 4.91474 4.95572 5.03123 5.03445 5.14627 5.16634 5.26229 5.29786 5.47841 5.80922 6.22114 6.22737 6.48790 7.05500 7.08741 7.84115 8.01130 9.19486 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.004989 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.374468 B = 5611.333230 C = 6252.860230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 H 0.112 0.888 4 C 0.108 3.892 5 N -0.610 5.610 6 C 0.530 3.470 7 O -0.586 6.586 8 C -0.105 4.105 9 C -0.138 4.138 10 C 0.065 3.935 11 O -0.400 6.400 12 C 0.062 3.938 13 C -0.135 4.135 14 C 0.081 3.919 15 C 0.166 3.834 16 H 0.088 0.912 17 N -0.739 5.739 18 C -0.220 4.220 19 H 0.071 0.929 20 C -0.055 4.055 21 N -0.980 5.980 22 Si 0.935 3.065 23 H -0.288 1.288 24 H -0.299 1.299 25 H -0.252 1.252 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.363 0.637 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.495 7.896 -10.173 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 H 0.130 0.870 4 C -0.015 4.015 5 N -0.342 5.342 6 C 0.320 3.680 7 O -0.467 6.467 8 C -0.126 4.126 9 C -0.176 4.176 10 C -0.012 4.012 11 O -0.319 6.319 12 C -0.015 4.015 13 C -0.174 4.174 14 C -0.044 4.044 15 C 0.057 3.943 16 H 0.106 0.894 17 N -0.382 5.382 18 C -0.351 4.351 19 H 0.089 0.911 20 C -0.247 4.247 21 N -0.630 5.630 22 Si 0.764 3.236 23 H -0.215 1.215 24 H -0.226 1.226 25 H -0.176 1.176 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.198 0.802 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.697 7.947 -10.704 17.736 hybrid contribution -1.402 -1.098 -0.349 1.815 sum 10.295 6.849 -11.053 16.585 Atomic orbital electron populations 1.21577 0.93433 1.01581 1.02461 1.22631 0.96866 0.99589 0.92988 0.87012 1.22302 0.82800 0.97996 0.98360 1.48620 1.12064 1.65541 1.08005 1.20723 0.84990 0.76738 0.85592 1.90636 1.83213 1.56276 1.16608 1.21399 0.91888 0.98397 1.00908 1.22056 0.98162 0.98328 0.99030 1.22661 0.88778 0.88321 1.01406 1.87909 1.45971 1.33446 1.64528 1.22732 0.94791 0.92107 0.91828 1.22111 0.95422 0.96735 1.03086 1.23058 1.01109 1.02029 0.78226 1.21447 0.88041 0.88127 0.96700 0.89389 1.42809 1.50780 1.35781 1.08794 1.19058 1.19416 1.08857 0.87779 0.91144 1.25287 1.01884 0.99647 0.97835 1.69842 1.44609 1.27432 1.21137 0.85721 0.78843 0.78999 0.80003 1.21534 1.22557 1.17632 0.94232 0.91758 0.90908 0.90448 0.93159 0.88236 0.91469 0.91004 0.91815 0.87088 0.91596 0.86583 0.88973 0.91640 0.92133 0.89104 0.80226 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.98 71.98 0.65 -2.79 16 2 C -0.10 -2.58 3.51 -9.41 -0.03 -2.62 16 3 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 4 C 0.11 3.09 6.35 86.85 0.55 3.64 16 5 N -0.61 -17.97 3.33 -811.78 -2.70 -20.67 16 6 C 0.53 16.28 6.86 87.66 0.60 16.88 16 7 O -0.59 -21.91 16.45 -3.02 -0.05 -21.96 16 8 C -0.10 -2.53 2.25 -11.37 -0.03 -2.55 16 9 C -0.14 -3.22 5.13 30.69 0.16 -3.07 16 10 C 0.06 1.24 6.84 72.01 0.49 1.73 16 11 O -0.40 -8.56 10.77 -148.98 -1.60 -10.16 16 12 C 0.06 1.05 6.84 72.01 0.49 1.54 16 13 C -0.14 -2.67 5.41 30.73 0.17 -2.51 16 14 C 0.08 2.29 5.89 86.73 0.51 2.80 16 15 C 0.17 5.22 3.40 46.18 0.16 5.38 16 16 H 0.09 2.71 8.09 -2.39 -0.02 2.69 16 17 N -0.74 -30.39 4.25 -317.32 -1.35 -31.74 16 18 C -0.22 -11.31 10.44 84.03 0.88 -10.43 16 19 H 0.07 3.90 8.06 -2.91 -0.02 3.87 16 20 C -0.05 -3.04 5.50 84.86 0.47 -2.57 16 21 N -0.98 -59.91 13.97 21.65 0.30 -59.61 16 22 Si 0.94 43.86 27.74 68.60 1.90 45.77 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 25 H -0.25 -10.61 6.52 99.48 0.65 -9.96 16 26 H 0.04 1.22 6.27 -2.39 -0.01 1.21 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 2.15 7.99 -2.38 -0.02 2.13 16 30 H 0.05 1.58 8.04 -2.39 -0.02 1.56 16 31 H 0.10 2.30 6.97 -2.39 -0.02 2.28 16 32 H 0.07 1.80 7.76 -2.38 -0.02 1.78 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.99 7.63 -2.39 -0.02 1.97 16 41 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 42 H 0.36 15.08 4.11 -92.71 -0.38 14.70 16 43 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -67.61 337.43 2.11 -65.49 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.55 Total: 27.44 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 5.06 Total: 5.44 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -3.75 Total: -112.02 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.65 Total: -32.12 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.90 Total: 45.77 kcal Total: -67.61 2.11 -65.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054321300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.267 kcal (2) G-P(sol) polarization free energy of solvation -67.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds