Wall clock time and date at job start Tue Mar 31 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.64111 * 2 1 4 4 C 1.54333 * 110.84774 * 236.83362 * 2 1 3 5 5 N 1.47028 * 107.26096 * 219.66834 * 4 2 1 6 6 C 1.34777 * 125.64354 * 178.84617 * 5 4 2 7 7 O 1.21283 * 120.00463 * 359.72563 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.44686 * 6 5 4 9 9 C 1.53181 * 109.54451 * 300.09801 * 8 6 5 10 10 C 1.53097 * 109.15820 * 183.24025 * 9 8 6 11 11 O 1.42904 * 109.48521 * 57.48007 * 10 9 8 12 12 C 1.42907 * 114.09614 * 298.88069 * 11 10 9 13 13 C 1.53097 * 109.40898 * 61.16268 * 12 11 10 14 14 C 1.47419 * 108.70447 * 358.59140 * 5 4 2 15 15 C 1.54911 * 104.83630 * 24.34992 * 14 5 4 16 16 H 1.09001 * 110.99900 * 81.06373 * 15 14 5 17 17 N 1.46494 * 111.00596 * 204.92119 * 15 14 5 18 18 C 1.36944 * 119.99814 * 273.54696 * 17 15 14 19 19 H 1.08006 * 119.99600 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99949 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99912 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99793 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47317 * 59.99529 * 22 20 18 24 24 H 1.48504 * 109.46961 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47102 * 299.99329 * 22 20 18 26 26 H 1.09004 * 109.47140 * 296.86039 * 1 2 3 27 27 H 1.08998 * 109.46950 * 56.85774 * 1 2 3 28 28 H 1.08995 * 109.47291 * 176.86245 * 1 2 3 29 29 H 1.09007 * 109.99123 * 100.20184 * 4 2 1 30 30 H 1.08992 * 109.78067 * 339.02532 * 4 2 1 31 31 H 1.09001 * 109.54731 * 60.27663 * 8 6 5 32 32 H 1.09001 * 109.52541 * 303.06352 * 9 8 6 33 33 H 1.09002 * 109.51994 * 63.24487 * 9 8 6 34 34 H 1.08994 * 109.40944 * 297.49436 * 10 9 8 35 35 H 1.09004 * 109.49483 * 177.50601 * 10 9 8 36 36 H 1.08998 * 109.48349 * 301.18228 * 12 11 10 37 37 H 1.09004 * 109.49053 * 181.14546 * 12 11 10 38 38 H 1.09002 * 109.52020 * 182.47927 * 13 12 11 39 39 H 1.09002 * 109.52129 * 62.29991 * 13 12 11 40 40 H 1.08998 * 110.36747 * 143.19119 * 14 5 4 41 41 H 1.08998 * 110.36429 * 265.40111 * 14 5 4 42 42 H 0.96993 * 120.00236 * 93.54849 * 17 15 14 43 43 H 0.97005 * 119.99785 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0793 -0.7890 -1.2073 5 7 3.2445 -1.5519 -0.7363 6 6 3.9923 -2.3861 -1.4856 7 8 3.7193 -2.5609 -2.6544 8 6 5.1714 -3.0969 -0.8729 9 6 6.1767 -2.0657 -0.3509 10 6 7.4066 -2.7951 0.1961 11 8 7.9729 -3.6111 -0.8313 12 6 7.0934 -4.6244 -1.3230 13 6 5.8519 -3.9684 -1.9330 14 6 3.4632 -1.2486 0.6897 15 6 2.0789 -0.7933 1.2152 16 1 1.4452 -1.6511 1.4403 17 7 2.2215 0.0738 2.3873 18 6 2.3175 -0.4758 3.6380 19 1 2.2877 -1.5485 3.7601 20 6 2.4520 0.3458 4.7487 21 7 2.4877 1.6530 4.5998 22 14 2.5823 -0.4039 6.4547 23 1 3.7730 -1.2891 6.5168 24 1 2.7177 0.6787 7.4621 25 1 1.3601 -1.1973 6.7413 26 1 -0.3634 0.4643 0.9168 27 1 -0.3633 0.5618 -0.8605 28 1 -0.3633 -1.0261 -0.0562 29 1 2.3814 -0.1003 -1.9964 30 1 1.3156 -1.4714 -1.5803 31 1 4.8313 -3.7240 -0.0488 32 1 6.4779 -1.4061 -1.1648 33 1 5.7165 -1.4783 0.4437 34 1 7.1113 -3.4224 1.0371 35 1 8.1445 -2.0651 0.5286 36 1 6.7940 -5.2756 -0.5018 37 1 7.6054 -5.2121 -2.0849 38 1 5.1597 -4.7405 -2.2689 39 1 6.1464 -3.3486 -2.7799 40 1 3.7960 -2.1405 1.2206 41 1 4.1946 -0.4478 0.7993 42 1 2.2478 1.0372 2.2777 43 1 2.5821 2.2272 5.3760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054321301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:38 Heat of formation + Delta-G solvation = -98.215077 kcal Electronic energy + Delta-G solvation = -23238.721148 eV Core-core repulsion = 19896.795013 eV Total energy + Delta-G solvation = -3341.926135 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61685 -39.93758 -38.82741 -35.87295 -34.94492 -33.73774 -32.49876 -32.00435 -29.16425 -28.15085 -26.28288 -25.71569 -24.50044 -23.14121 -21.66147 -21.31961 -20.25117 -19.08526 -18.15397 -17.51466 -17.14628 -16.95219 -16.55862 -16.28352 -15.78457 -15.39885 -15.26630 -14.83102 -14.57462 -14.52962 -14.47446 -14.25988 -13.68708 -13.33104 -13.25923 -13.08671 -12.88883 -12.79640 -12.54435 -12.34722 -12.23108 -12.12390 -11.99649 -11.72465 -11.69946 -11.45678 -11.38902 -11.02732 -10.89648 -10.46393 -9.71303 -9.02609 -7.92467 -5.22191 1.51389 1.52523 1.53450 1.59420 1.93356 2.58533 2.94855 3.29448 3.39329 3.59690 3.70710 3.74557 3.78867 3.92777 3.99581 4.15708 4.18370 4.26500 4.34948 4.46159 4.48865 4.56081 4.56978 4.66637 4.67704 4.76619 4.80199 4.84993 4.88265 5.02002 5.06856 5.09005 5.13679 5.17043 5.25621 5.34050 5.44689 5.56988 6.23649 6.27931 6.47227 7.05744 7.36394 8.07129 8.31743 9.30095 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.005152 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.438727 B = 5432.993304 C = 6927.137935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 H 0.078 0.922 4 C 0.117 3.883 5 N -0.611 5.611 6 C 0.528 3.472 7 O -0.583 6.583 8 C -0.102 4.102 9 C -0.149 4.149 10 C 0.064 3.936 11 O -0.400 6.400 12 C 0.061 3.939 13 C -0.129 4.129 14 C 0.087 3.913 15 C 0.170 3.830 16 H 0.062 0.938 17 N -0.719 5.719 18 C -0.241 4.241 19 H 0.079 0.921 20 C -0.065 4.065 21 N -0.966 5.966 22 Si 0.966 3.034 23 H -0.276 1.276 24 H -0.300 1.300 25 H -0.280 1.280 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.377 0.623 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.938 -9.829 -10.206 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.344 5.344 6 C 0.318 3.682 7 O -0.464 6.464 8 C -0.123 4.123 9 C -0.187 4.187 10 C -0.013 4.013 11 O -0.320 6.320 12 C -0.015 4.015 13 C -0.167 4.167 14 C -0.039 4.039 15 C 0.059 3.941 16 H 0.080 0.920 17 N -0.359 5.359 18 C -0.373 4.373 19 H 0.097 0.903 20 C -0.258 4.258 21 N -0.616 5.616 22 Si 0.795 3.205 23 H -0.202 1.202 24 H -0.227 1.227 25 H -0.207 1.207 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.209 0.791 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.012 -10.057 -10.770 15.564 hybrid contribution -0.354 0.485 1.069 1.226 sum 4.658 -9.572 -9.701 14.402 Atomic orbital electron populations 1.21622 0.92670 1.02285 1.02083 1.22387 0.97476 0.99146 0.93282 0.90316 1.21993 0.87600 0.94408 0.96530 1.48563 1.30053 1.43621 1.12120 1.20759 0.83528 0.78443 0.85466 1.90643 1.72351 1.65566 1.17842 1.21353 0.92797 0.97918 1.00194 1.22291 0.96443 0.97953 1.02044 1.22650 0.94908 0.94078 0.89624 1.87913 1.40737 1.47387 1.55922 1.22747 0.89985 0.89549 0.99207 1.21979 0.97960 0.99443 0.97336 1.23271 1.00888 1.00737 0.78983 1.21514 0.92847 0.93420 0.86280 0.91976 1.42372 1.87099 1.05068 1.01313 1.19545 1.40900 0.92194 0.84663 0.90280 1.25448 1.03439 0.95674 1.01257 1.69792 1.58675 1.03218 1.29897 0.85335 0.78191 0.76821 0.80127 1.20203 1.22688 1.20654 0.93217 0.90934 0.92087 0.91654 0.91011 0.87070 0.91925 0.89543 0.91520 0.87464 0.91441 0.86948 0.89977 0.92127 0.90360 0.91675 0.79057 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.16 71.98 0.66 -2.74 16 2 C -0.10 -3.04 3.16 -9.60 -0.03 -3.07 16 3 H 0.08 2.43 7.99 -2.39 -0.02 2.41 16 4 C 0.12 3.32 6.48 86.73 0.56 3.88 16 5 N -0.61 -18.16 3.32 -811.78 -2.70 -20.85 16 6 C 0.53 16.07 7.22 87.66 0.63 16.70 16 7 O -0.58 -21.23 16.30 -3.04 -0.05 -21.28 16 8 C -0.10 -2.43 1.96 -11.42 -0.02 -2.45 16 9 C -0.15 -3.44 5.19 30.69 0.16 -3.28 16 10 C 0.06 1.28 6.84 72.01 0.49 1.77 16 11 O -0.40 -8.94 10.77 -148.98 -1.60 -10.54 16 12 C 0.06 1.10 6.84 72.01 0.49 1.59 16 13 C -0.13 -2.83 4.74 30.69 0.15 -2.68 16 14 C 0.09 2.68 4.83 86.86 0.42 3.10 16 15 C 0.17 5.92 3.14 46.38 0.15 6.06 16 16 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 17 N -0.72 -32.22 5.28 -316.37 -1.67 -33.88 16 18 C -0.24 -12.08 9.98 84.03 0.84 -11.24 16 19 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 20 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 21 N -0.97 -55.42 13.06 21.65 0.28 -55.14 16 22 Si 0.97 43.08 29.55 68.60 2.03 45.11 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.50 8.07 -2.39 -0.02 1.48 16 29 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.07 1.96 7.77 -2.39 -0.02 1.94 16 31 H 0.11 2.35 7.86 -2.39 -0.02 2.33 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 2.08 5.11 -2.39 -0.01 2.07 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.55 8.03 -2.39 -0.02 1.53 16 40 H 0.08 2.28 7.35 -2.39 -0.02 2.27 16 41 H 0.07 2.15 7.12 -2.39 -0.02 2.13 16 42 H 0.38 18.42 7.71 -92.71 -0.71 17.70 16 43 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -62.09 339.09 1.53 -60.56 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.28 Total: 31.38 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 4.96 Total: 4.66 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.08 Total: -109.88 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.65 Total: -31.83 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -62.09 1.53 -60.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054321301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.659 kcal (2) G-P(sol) polarization free energy of solvation -62.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds