Wall clock time and date at job start Tue Mar 31 2020 05:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09005 * 110.64237 * 2 1 4 4 C 1.54327 * 110.72089 * 123.14280 * 2 1 3 5 5 N 1.47022 * 107.27245 * 140.73692 * 4 2 1 6 6 C 1.34777 * 125.64677 * 181.02624 * 5 4 2 7 7 O 1.21368 * 119.99919 * 0.26581 * 6 5 4 8 8 C 1.49086 * 120.00072 * 179.97438 * 6 5 4 9 9 O 1.20777 * 120.00018 * 359.97438 * 8 6 5 10 10 C 1.50700 * 120.00121 * 179.97438 * 8 6 5 11 11 C 1.52992 * 109.47257 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.46986 * 300.00158 * 10 8 6 13 13 C 1.53002 * 109.47318 * 59.99645 * 10 8 6 14 14 C 1.47414 * 108.70388 * 1.28165 * 5 4 2 15 15 C 1.55128 * 104.72415 * 335.55988 * 14 5 4 16 16 H 1.09001 * 110.93934 * 155.29165 * 15 14 5 17 17 N 1.46500 * 111.19206 * 279.18456 * 15 14 5 18 18 C 1.36934 * 120.00670 * 267.18951 * 17 15 14 19 19 H 1.08007 * 119.99848 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00273 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00082 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99939 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47273 * 60.00230 * 22 20 18 24 24 H 1.48501 * 109.47184 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47053 * 299.99949 * 22 20 18 26 26 H 1.09001 * 109.47477 * 298.31187 * 1 2 3 27 27 H 1.09006 * 109.47409 * 58.31481 * 1 2 3 28 28 H 1.09008 * 109.47525 * 178.31271 * 1 2 3 29 29 H 1.09000 * 109.88237 * 21.31333 * 4 2 1 30 30 H 1.09002 * 109.88164 * 260.15295 * 4 2 1 31 31 H 1.09005 * 109.47124 * 59.99773 * 11 10 8 32 32 H 1.08996 * 109.47365 * 179.97438 * 11 10 8 33 33 H 1.09004 * 109.47330 * 299.99977 * 11 10 8 34 34 H 1.08998 * 109.47453 * 59.99968 * 12 10 8 35 35 H 1.08996 * 109.47248 * 180.02562 * 12 10 8 36 36 H 1.09005 * 109.46932 * 299.99942 * 12 10 8 37 37 H 1.09002 * 109.46768 * 59.99928 * 13 10 8 38 38 H 1.08996 * 109.46948 * 180.02562 * 13 10 8 39 39 H 1.08996 * 109.46989 * 300.00583 * 13 10 8 40 40 H 1.09008 * 110.36322 * 94.48754 * 14 5 4 41 41 H 1.09000 * 110.37189 * 216.80456 * 14 5 4 42 42 H 0.97002 * 119.99413 * 87.18805 * 17 15 14 43 43 H 0.96999 * 119.99967 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7892 1.2086 5 7 3.2470 -1.5461 0.7427 6 6 3.9956 -2.3767 1.4951 7 8 3.7181 -2.5531 2.6634 8 6 5.1606 -3.0839 0.8907 9 8 5.4333 -2.9128 -0.2734 10 6 5.9980 -4.0122 1.7322 11 6 7.1205 -4.6029 0.8768 12 6 6.6043 -3.2334 2.9013 13 6 5.1196 -5.1422 2.2731 14 6 3.4706 -1.2413 -0.6822 15 6 2.0828 -0.7949 -1.2123 16 1 2.1880 -0.1517 -2.0861 17 7 1.2342 -1.9504 -1.5138 18 6 1.2125 -2.4725 -2.7795 19 1 1.8213 -2.0326 -3.5556 20 6 0.4089 -3.5677 -3.0648 21 7 -0.3327 -4.1041 -2.1190 22 14 0.3798 -4.2803 -4.7914 23 1 1.7450 -4.7302 -5.1642 24 1 -0.5517 -5.4360 -4.8343 25 1 -0.0774 -3.2408 -5.7483 26 1 -0.3634 0.4874 0.9047 27 1 -0.3634 0.5398 -0.8745 28 1 -0.3634 -1.0273 -0.0303 29 1 1.3139 -1.4754 1.5781 30 1 2.3710 -0.0992 1.9992 31 1 7.7462 -3.7976 0.4919 32 1 7.7265 -5.2740 1.4856 33 1 6.6890 -5.1577 0.0436 34 1 5.8048 -2.8122 3.5109 35 1 7.2103 -3.9047 3.5097 36 1 7.2300 -2.4283 2.5160 37 1 4.6877 -5.6970 1.4402 38 1 5.7253 -5.8133 2.8821 39 1 4.3202 -4.7210 2.8826 40 1 4.1970 -0.4355 -0.7883 41 1 3.8102 -2.1314 -1.2118 42 1 0.6877 -2.3458 -0.8166 43 1 -0.8945 -4.8692 -2.3185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054506639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:08 Heat of formation + Delta-G solvation = -58.082722 kcal Electronic energy + Delta-G solvation = -23647.434437 eV Core-core repulsion = 20307.248571 eV Total energy + Delta-G solvation = -3340.185865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73811 -38.86691 -37.53131 -35.76277 -33.85037 -32.32163 -30.49732 -27.85975 -27.57842 -27.30967 -26.73965 -24.90630 -23.80423 -22.05824 -20.50991 -19.28657 -18.29884 -17.51689 -16.73127 -16.28064 -15.80883 -15.29962 -14.93766 -14.56418 -14.14598 -13.84965 -13.68415 -13.21624 -13.09622 -13.01693 -12.71404 -12.40257 -12.24779 -12.20403 -12.11966 -11.95933 -11.61752 -11.50180 -11.30358 -11.11986 -10.97921 -10.91310 -10.75904 -10.63985 -10.41235 -10.26929 -9.96480 -9.65228 -9.15165 -8.86885 -8.32855 -7.03848 -5.82809 -3.12586 1.25267 2.91056 3.28512 3.41220 3.46221 3.46654 4.19935 4.53607 4.60972 4.83479 4.85382 4.97983 5.16635 5.29194 5.32138 5.52439 5.55339 5.61154 5.63163 5.72842 5.75876 5.81654 5.87945 5.88177 5.92823 5.96975 6.07040 6.18807 6.20696 6.23621 6.31485 6.33418 6.36542 6.49173 6.58101 6.72704 6.92973 7.20903 7.64932 7.73394 8.22161 8.34828 9.46703 10.00972 10.35883 11.39212 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.005913 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.694618 B = 4733.840237 C = 5817.099557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.080 0.920 4 C 0.112 3.888 5 N -0.574 5.574 6 C 0.487 3.513 7 O -0.527 6.527 8 C 0.359 3.641 9 O -0.408 6.408 10 C -0.093 4.093 11 C -0.135 4.135 12 C -0.141 4.141 13 C -0.144 4.144 14 C 0.062 3.938 15 C 0.169 3.831 16 H 0.076 0.924 17 N -0.707 5.707 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.386 0.614 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.927 4.732 8.610 14.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.098 0.902 4 C -0.011 4.011 5 N -0.307 5.307 6 C 0.272 3.728 7 O -0.405 6.405 8 C 0.228 3.772 9 O -0.276 6.276 10 C -0.094 4.094 11 C -0.192 4.192 12 C -0.198 4.198 13 C -0.201 4.201 14 C -0.064 4.064 15 C 0.057 3.943 16 H 0.094 0.906 17 N -0.347 5.347 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.222 0.778 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.953 4.610 8.418 14.563 hybrid contribution -0.197 -0.615 -0.737 0.980 sum 10.756 3.995 7.681 13.807 Atomic orbital electron populations 1.21605 0.93297 1.03465 1.00582 1.22552 0.97238 0.98539 0.95254 0.90201 1.22101 0.87506 0.94529 0.96916 1.48455 1.27994 1.41630 1.12636 1.20504 0.84933 0.80773 0.86588 1.90660 1.70776 1.63150 1.15951 1.24824 0.83645 0.80237 0.88474 1.90401 1.64757 1.54749 1.17733 1.20919 0.95965 0.95954 0.96604 1.21774 0.97006 1.01039 0.99432 1.21881 1.01448 0.99766 0.96724 1.21898 1.00022 0.96523 1.01652 1.23819 1.00857 1.02073 0.79634 1.21451 0.88504 0.89952 0.94431 0.90600 1.42349 1.49540 1.32498 1.10355 1.19202 1.21272 1.09821 0.87381 0.91008 1.24740 0.99421 0.98636 0.97669 1.69649 1.30755 1.25525 1.31831 0.86275 0.77313 0.78496 0.84135 1.21212 1.21702 1.21157 0.93729 0.92224 0.90941 0.90960 0.91873 0.92130 0.91699 0.91817 0.90193 0.91442 0.92779 0.92314 0.91493 0.90113 0.92326 0.88264 0.77830 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.81 37.15 0.33 -1.75 16 2 C -0.12 -1.80 3.40 -88.79 -0.30 -2.10 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.11 1.82 6.45 -3.06 -0.02 1.80 16 5 N -0.57 -10.31 3.32 -171.04 -0.57 -10.88 16 6 C 0.49 8.75 7.58 -11.76 -0.09 8.66 16 7 O -0.53 -9.84 13.71 5.48 0.08 -9.76 16 8 C 0.36 5.91 6.00 -29.81 -0.18 5.73 16 9 O -0.41 -7.37 13.39 5.98 0.08 -7.29 16 10 C -0.09 -1.22 0.76 -155.66 -0.12 -1.33 16 11 C -0.14 -1.56 7.76 37.15 0.29 -1.28 16 12 C -0.14 -1.58 8.29 37.16 0.31 -1.27 16 13 C -0.14 -1.85 8.29 37.16 0.31 -1.54 16 14 C 0.06 1.12 5.79 -2.42 -0.01 1.11 16 15 C 0.17 3.19 3.47 -65.66 -0.23 2.96 16 16 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 17 N -0.71 -16.83 4.58 -51.24 -0.23 -17.06 16 18 C -0.25 -6.57 9.96 -15.06 -0.15 -6.72 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 22 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.37 6.36 -51.92 -0.33 1.04 16 29 H 0.07 1.28 7.82 -51.93 -0.41 0.88 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.08 1.01 6.44 -51.93 -0.33 0.68 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.17 6.42 -51.93 -0.33 0.84 16 40 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 41 H 0.10 2.09 6.14 -51.93 -0.32 1.77 16 42 H 0.39 9.93 6.34 -40.82 -0.26 9.67 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 342.36 15.07 5.16 5.16 Total: -1.00 -30.08 342.36 -6.77 -36.85 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.02 Total: 8.78 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 0.04 Total: 3.95 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.08 Total: -54.75 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.16 Total: -17.05 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.08 -6.77 -36.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054506639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.234 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds