Wall clock time and date at job start Tue Mar 31 2020 05:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.88730 * 2 1 4 4 C 1.54904 * 111.00268 * 236.11892 * 2 1 3 5 5 N 1.47432 * 104.82944 * 204.92043 * 4 2 1 6 6 C 1.34777 * 125.64695 * 204.09513 * 5 4 2 7 7 O 1.21373 * 119.99808 * 359.97438 * 6 5 4 8 8 C 1.49086 * 119.99971 * 180.27299 * 6 5 4 9 9 O 1.20783 * 120.00068 * 359.71795 * 8 6 5 10 10 C 1.50698 * 119.99781 * 179.72456 * 8 6 5 11 11 C 1.52999 * 109.47004 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.47207 * 299.99369 * 10 8 6 13 13 C 1.52995 * 109.47490 * 59.99786 * 10 8 6 14 14 C 1.47021 * 108.70371 * 24.35213 * 5 4 2 15 15 C 1.54331 * 107.26531 * 358.58910 * 14 5 4 16 16 H 1.09003 * 110.84977 * 219.66911 * 15 14 5 17 17 N 1.46507 * 110.66908 * 96.52084 * 15 14 5 18 18 C 1.36935 * 120.00018 * 91.41030 * 17 15 14 19 19 H 1.08004 * 120.00105 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00283 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00093 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99514 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47137 * 90.00643 * 22 20 18 24 24 H 1.48505 * 109.46921 * 210.00313 * 22 20 18 25 25 H 1.48497 * 109.47252 * 329.99839 * 22 20 18 26 26 H 1.08998 * 109.47334 * 182.42505 * 1 2 3 27 27 H 1.09000 * 109.47062 * 302.42622 * 1 2 3 28 28 H 1.08996 * 109.47029 * 62.42814 * 1 2 3 29 29 H 1.09000 * 110.37054 * 86.08347 * 4 2 1 30 30 H 1.09002 * 110.46231 * 323.79839 * 4 2 1 31 31 H 1.09007 * 109.47302 * 59.99534 * 11 10 8 32 32 H 1.08998 * 109.47611 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.47527 * 299.99994 * 11 10 8 34 34 H 1.09001 * 109.47038 * 60.00421 * 12 10 8 35 35 H 1.09003 * 109.47342 * 180.02562 * 12 10 8 36 36 H 1.09001 * 109.47406 * 300.00436 * 12 10 8 37 37 H 1.09003 * 109.47440 * 60.00167 * 13 10 8 38 38 H 1.09003 * 109.47199 * 179.97438 * 13 10 8 39 39 H 1.09001 * 109.47438 * 299.99999 * 13 10 8 40 40 H 1.08999 * 109.88043 * 118.13153 * 14 5 4 41 41 H 1.09000 * 109.88498 * 239.29571 * 14 5 4 42 42 H 0.97002 * 119.99980 * 271.41427 * 17 15 14 43 43 H 0.97002 * 119.99666 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8062 -1.2006 5 7 3.4271 -1.2429 -0.7737 6 6 4.4477 -1.5611 -1.5944 7 8 4.3005 -1.4997 -2.7977 8 6 5.7552 -1.9949 -1.0245 9 8 5.9015 -2.0563 0.1729 10 6 6.8943 -2.3567 -1.9424 11 6 8.1113 -2.7633 -1.1090 12 6 6.4762 -3.5242 -2.8385 13 6 7.2522 -1.1495 -2.8114 14 6 3.4657 -1.2797 0.6956 15 6 2.0861 -0.8083 1.2020 16 1 2.1921 -0.1707 2.0796 17 7 1.2244 -1.9556 1.4982 18 6 1.2041 -2.4891 2.7592 19 1 1.8230 -2.0639 3.5355 20 6 0.3881 -3.5764 3.0398 21 7 0.3682 -4.0888 4.2519 22 14 -0.6829 -4.3113 1.6973 23 1 0.0718 -5.3764 0.9896 24 1 -1.9078 -4.8920 2.3036 25 1 -1.0643 -3.2496 0.7316 26 1 -0.3634 -1.0267 0.0435 27 1 -0.3633 0.5510 0.8674 28 1 -0.3633 0.4756 -0.9109 29 1 2.1561 -0.1712 -2.0837 30 1 1.4525 -1.6699 -1.4049 31 1 7.8566 -3.6232 -0.4895 32 1 8.9352 -3.0254 -1.7728 33 1 8.4091 -1.9313 -0.4708 34 1 5.6093 -3.2342 -3.4322 35 1 7.3003 -3.7862 -3.5021 36 1 6.2212 -4.3843 -2.2194 37 1 7.5502 -0.3177 -2.1731 38 1 8.0765 -1.4110 -3.4750 39 1 6.3854 -0.8593 -3.4052 40 1 3.6600 -2.2968 1.0359 41 1 4.2424 -0.6089 1.0630 42 1 0.6683 -2.3372 0.8011 43 1 -0.2018 -4.8488 4.4479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054506640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:10 Heat of formation + Delta-G solvation = -54.638182 kcal Electronic energy + Delta-G solvation = -23485.398513 eV Core-core repulsion = 20145.362014 eV Total energy + Delta-G solvation = -3340.036499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89489 -39.05912 -37.72598 -35.91589 -34.06020 -32.43387 -30.87556 -28.25340 -27.73923 -27.44649 -26.92158 -25.07518 -23.56855 -22.16981 -20.60591 -19.54151 -18.35945 -17.92346 -16.98910 -16.37889 -15.98387 -15.38873 -15.16928 -14.52550 -14.35003 -14.10724 -13.84060 -13.44039 -13.20843 -13.04903 -12.70283 -12.65017 -12.34756 -12.30358 -12.23623 -12.17288 -11.81753 -11.74154 -11.50143 -11.44470 -11.11173 -11.06230 -10.88638 -10.72686 -10.57098 -10.35100 -10.06244 -9.62487 -9.27747 -8.98317 -8.50186 -7.39623 -5.84977 -3.22193 1.08608 2.73970 3.08905 3.29718 3.33748 3.40025 4.03027 4.46651 4.51126 4.69441 4.72296 4.80619 5.02077 5.09915 5.18288 5.27890 5.42138 5.47811 5.50749 5.58473 5.62985 5.68123 5.69737 5.73660 5.79864 5.80281 5.96565 5.99198 6.04664 6.10937 6.11862 6.14400 6.24301 6.34142 6.43467 6.62059 6.68040 6.99390 7.55715 7.89587 8.03190 8.33548 9.10190 9.82401 10.00625 11.32849 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.005129 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.145853 B = 5458.257086 C = 6013.513898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 H 0.085 0.915 4 C 0.108 3.892 5 N -0.582 5.582 6 C 0.485 3.515 7 O -0.525 6.525 8 C 0.356 3.644 9 O -0.405 6.405 10 C -0.093 4.093 11 C -0.136 4.136 12 C -0.143 4.143 13 C -0.142 4.142 14 C 0.075 3.925 15 C 0.175 3.825 16 H 0.084 0.916 17 N -0.736 5.736 18 C -0.250 4.250 19 H 0.093 0.907 20 C 0.011 3.989 21 N -0.929 5.929 22 Si 0.879 3.121 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.276 1.276 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.363 0.637 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.628 7.128 -13.951 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 H 0.103 0.897 4 C -0.013 4.013 5 N -0.316 5.316 6 C 0.270 3.730 7 O -0.404 6.404 8 C 0.224 3.776 9 O -0.273 6.273 10 C -0.094 4.094 11 C -0.193 4.193 12 C -0.201 4.201 13 C -0.199 4.199 14 C -0.050 4.050 15 C 0.063 3.937 16 H 0.102 0.898 17 N -0.378 5.378 18 C -0.379 4.379 19 H 0.111 0.889 20 C -0.186 4.186 21 N -0.576 5.576 22 Si 0.709 3.291 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.202 1.202 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.197 0.803 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.708 7.029 -13.667 18.731 hybrid contribution -0.792 -0.767 -0.809 1.367 sum 9.916 6.262 -14.476 18.630 Atomic orbital electron populations 1.21594 0.93366 1.03007 1.01183 1.22695 0.96984 0.98919 0.95194 0.89684 1.22407 0.82449 0.98586 0.97905 1.48624 1.11622 1.62422 1.08887 1.20610 0.85552 0.80016 0.86788 1.90669 1.82832 1.52988 1.13891 1.24850 0.88920 0.73929 0.89871 1.90455 1.82694 1.36555 1.17606 1.20923 0.93739 0.98502 0.96271 1.21782 0.95790 1.02319 0.99421 1.21900 1.03075 0.95897 0.99197 1.21887 1.03079 0.95570 0.99360 1.23439 1.00964 1.03547 0.77096 1.21257 0.87932 0.89245 0.95230 0.89794 1.42797 1.49531 1.34879 1.10577 1.19074 1.21698 1.10487 0.86685 0.88885 1.24645 0.99597 0.98274 0.96039 1.69691 1.42700 1.26365 1.18822 0.86658 0.80907 0.79419 0.82080 1.21108 1.21547 1.20229 0.91709 0.91720 0.93304 0.90536 0.91163 0.91852 0.91621 0.91986 0.90192 0.91363 0.92479 0.92651 0.91379 0.90199 0.89522 0.91461 0.80272 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.98 37.16 0.33 -1.58 16 2 C -0.12 -1.71 3.52 -88.47 -0.31 -2.02 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.11 1.64 6.34 -2.53 -0.02 1.62 16 5 N -0.58 -9.58 3.33 -171.16 -0.57 -10.15 16 6 C 0.48 7.81 7.58 -11.76 -0.09 7.72 16 7 O -0.53 -8.79 13.64 5.48 0.07 -8.72 16 8 C 0.36 5.24 6.00 -29.81 -0.18 5.06 16 9 O -0.41 -6.72 13.74 5.98 0.08 -6.63 16 10 C -0.09 -1.07 0.76 -155.66 -0.12 -1.19 16 11 C -0.14 -1.39 7.76 37.16 0.29 -1.10 16 12 C -0.14 -1.56 8.29 37.16 0.31 -1.25 16 13 C -0.14 -1.42 8.29 37.16 0.31 -1.11 16 14 C 0.07 1.31 5.23 -3.06 -0.02 1.29 16 15 C 0.18 3.13 3.39 -66.09 -0.22 2.90 16 16 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 17 N -0.74 -16.25 4.26 -51.64 -0.22 -16.47 16 18 C -0.25 -6.70 10.44 -15.06 -0.16 -6.85 16 19 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 20 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 21 N -0.93 -28.47 13.97 55.49 0.78 -27.70 16 22 Si 0.88 21.56 27.73 -169.99 -4.71 16.85 16 23 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 26 H 0.06 1.08 6.26 -51.93 -0.33 0.75 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 30 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 31 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.08 0.99 6.43 -51.93 -0.33 0.65 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.91 6.43 -51.93 -0.33 0.58 16 40 H 0.09 1.77 7.60 -51.93 -0.39 1.38 16 41 H 0.07 1.10 7.58 -51.93 -0.39 0.71 16 42 H 0.36 8.00 4.10 -40.82 -0.17 7.83 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -30.55 339.75 -6.44 -36.99 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.02 Total: 7.02 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 0.03 Total: 3.71 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.01 Total: -54.32 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.16 Total: -15.35 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.85 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.55 -6.44 -36.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054506640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.652 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds