Wall clock time and date at job start Tue Mar 31 2020 05:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.88730 * 2 1 4 4 C 1.54904 * 111.00268 * 236.11892 * 2 1 3 5 5 N 1.47432 * 104.82944 * 204.92043 * 4 2 1 6 6 C 1.34777 * 125.64695 * 204.09513 * 5 4 2 7 7 O 1.21373 * 119.99808 * 359.97438 * 6 5 4 8 8 C 1.49086 * 119.99971 * 180.27299 * 6 5 4 9 9 O 1.20783 * 120.00068 * 359.71795 * 8 6 5 10 10 C 1.50698 * 119.99781 * 179.72456 * 8 6 5 11 11 C 1.52999 * 109.47004 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.47207 * 299.99369 * 10 8 6 13 13 C 1.52995 * 109.47490 * 59.99786 * 10 8 6 14 14 C 1.47021 * 108.70371 * 24.35213 * 5 4 2 15 15 C 1.54331 * 107.26531 * 358.58910 * 14 5 4 16 16 H 1.09003 * 110.84977 * 219.66911 * 15 14 5 17 17 N 1.46507 * 110.66908 * 96.52084 * 15 14 5 18 18 C 1.36935 * 120.00018 * 91.41030 * 17 15 14 19 19 H 1.08004 * 120.00105 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00283 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00093 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99514 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47137 * 90.00643 * 22 20 18 24 24 H 1.48505 * 109.46921 * 210.00313 * 22 20 18 25 25 H 1.48497 * 109.47252 * 329.99839 * 22 20 18 26 26 H 1.08998 * 109.47334 * 182.42505 * 1 2 3 27 27 H 1.09000 * 109.47062 * 302.42622 * 1 2 3 28 28 H 1.08996 * 109.47029 * 62.42814 * 1 2 3 29 29 H 1.09000 * 110.37054 * 86.08347 * 4 2 1 30 30 H 1.09002 * 110.46231 * 323.79839 * 4 2 1 31 31 H 1.09007 * 109.47302 * 59.99534 * 11 10 8 32 32 H 1.08998 * 109.47611 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.47527 * 299.99994 * 11 10 8 34 34 H 1.09001 * 109.47038 * 60.00421 * 12 10 8 35 35 H 1.09003 * 109.47342 * 180.02562 * 12 10 8 36 36 H 1.09001 * 109.47406 * 300.00436 * 12 10 8 37 37 H 1.09003 * 109.47440 * 60.00167 * 13 10 8 38 38 H 1.09003 * 109.47199 * 179.97438 * 13 10 8 39 39 H 1.09001 * 109.47438 * 299.99999 * 13 10 8 40 40 H 1.08999 * 109.88043 * 118.13153 * 14 5 4 41 41 H 1.09000 * 109.88498 * 239.29571 * 14 5 4 42 42 H 0.97002 * 119.99980 * 271.41427 * 17 15 14 43 43 H 0.97002 * 119.99666 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8062 -1.2006 5 7 3.4271 -1.2429 -0.7737 6 6 4.4477 -1.5611 -1.5944 7 8 4.3005 -1.4997 -2.7977 8 6 5.7552 -1.9949 -1.0245 9 8 5.9015 -2.0563 0.1729 10 6 6.8943 -2.3567 -1.9424 11 6 8.1113 -2.7633 -1.1090 12 6 6.4762 -3.5242 -2.8385 13 6 7.2522 -1.1495 -2.8114 14 6 3.4657 -1.2797 0.6956 15 6 2.0861 -0.8083 1.2020 16 1 2.1921 -0.1707 2.0796 17 7 1.2244 -1.9556 1.4982 18 6 1.2041 -2.4891 2.7592 19 1 1.8230 -2.0639 3.5355 20 6 0.3881 -3.5764 3.0398 21 7 0.3682 -4.0888 4.2519 22 14 -0.6829 -4.3113 1.6973 23 1 0.0718 -5.3764 0.9896 24 1 -1.9078 -4.8920 2.3036 25 1 -1.0643 -3.2496 0.7316 26 1 -0.3634 -1.0267 0.0435 27 1 -0.3633 0.5510 0.8674 28 1 -0.3633 0.4756 -0.9109 29 1 2.1561 -0.1712 -2.0837 30 1 1.4525 -1.6699 -1.4049 31 1 7.8566 -3.6232 -0.4895 32 1 8.9352 -3.0254 -1.7728 33 1 8.4091 -1.9313 -0.4708 34 1 5.6093 -3.2342 -3.4322 35 1 7.3003 -3.7862 -3.5021 36 1 6.2212 -4.3843 -2.2194 37 1 7.5502 -0.3177 -2.1731 38 1 8.0765 -1.4110 -3.4750 39 1 6.3854 -0.8593 -3.4052 40 1 3.6600 -2.2968 1.0359 41 1 4.2424 -0.6089 1.0630 42 1 0.6683 -2.3372 0.8011 43 1 -0.2018 -4.8488 4.4479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054506640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:09 Heat of formation + Delta-G solvation = -73.900415 kcal Electronic energy + Delta-G solvation = -23486.233786 eV Core-core repulsion = 20145.362014 eV Total energy + Delta-G solvation = -3340.871772 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.11239 -40.33619 -39.06037 -36.93765 -35.77617 -33.98143 -32.66446 -29.80798 -28.76073 -28.26443 -27.94231 -26.26067 -25.43382 -23.55399 -21.78063 -20.95836 -19.86451 -19.51432 -18.29831 -17.64612 -17.20976 -16.69881 -16.51612 -15.97199 -15.95796 -15.49146 -14.82371 -14.70472 -14.62207 -14.56588 -14.10186 -13.92465 -13.59502 -13.34879 -13.26227 -13.14333 -13.07429 -13.04792 -12.90691 -12.60830 -12.55861 -12.30968 -12.13874 -11.98314 -11.96265 -11.74730 -11.63569 -11.45255 -11.08157 -10.36020 -9.85546 -9.36178 -8.03812 -5.37498 -0.12066 1.33309 1.36504 1.43355 1.53614 1.85257 2.45201 2.80802 3.25639 3.44503 3.49575 3.57985 3.77515 3.84169 3.86291 3.97271 4.26414 4.31668 4.50058 4.54321 4.60974 4.64708 4.70734 4.78563 4.82229 4.88345 4.90048 4.90779 4.92408 4.97934 5.00110 5.15374 5.17693 5.23810 5.29666 5.33932 5.48274 5.76986 5.82676 6.19830 6.24887 6.75798 7.05185 7.79648 7.97940 9.17443 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.005129 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.145853 B = 5458.257086 C = 6013.513898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 H 0.115 0.885 4 C 0.106 3.894 5 N -0.588 5.588 6 C 0.480 3.520 7 O -0.529 6.529 8 C 0.354 3.646 9 O -0.431 6.431 10 C -0.092 4.092 11 C -0.133 4.133 12 C -0.141 4.141 13 C -0.137 4.137 14 C 0.090 3.910 15 C 0.164 3.836 16 H 0.084 0.916 17 N -0.736 5.736 18 C -0.227 4.227 19 H 0.064 0.936 20 C -0.057 4.057 21 N -0.981 5.981 22 Si 0.941 3.059 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.245 1.245 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.366 0.634 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.281 8.424 -16.776 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 H 0.133 0.867 4 C -0.016 4.016 5 N -0.322 5.322 6 C 0.265 3.735 7 O -0.408 6.408 8 C 0.225 3.775 9 O -0.300 6.300 10 C -0.093 4.093 11 C -0.190 4.190 12 C -0.198 4.198 13 C -0.194 4.194 14 C -0.036 4.036 15 C 0.054 3.946 16 H 0.102 0.898 17 N -0.379 5.379 18 C -0.358 4.358 19 H 0.082 0.918 20 C -0.248 4.248 21 N -0.631 5.631 22 Si 0.769 3.231 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.170 1.170 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.200 0.800 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.378 8.378 -16.554 21.765 hybrid contribution -0.890 -1.099 0.058 1.415 sum 10.489 7.279 -16.497 20.860 Atomic orbital electron populations 1.21577 0.92827 1.01745 1.02773 1.22661 0.97304 0.99578 0.92495 0.86716 1.22519 0.81603 0.98636 0.98807 1.48716 1.12425 1.62790 1.08269 1.20994 0.86020 0.79664 0.86774 1.90663 1.83085 1.53034 1.14010 1.25348 0.89203 0.72943 0.90022 1.90452 1.82993 1.37864 1.18725 1.21050 0.92745 0.99461 0.96071 1.21784 0.95976 1.01611 0.99602 1.21898 1.03579 0.95185 0.99111 1.21873 1.03383 0.94862 0.99259 1.23067 1.00810 1.01626 0.78069 1.21500 0.87692 0.88355 0.97048 0.89763 1.42736 1.50355 1.36002 1.08822 1.19041 1.19500 1.09462 0.87782 0.91847 1.25369 1.01884 0.99390 0.98201 1.69862 1.44495 1.27448 1.21306 0.85639 0.78658 0.79033 0.79797 1.21556 1.22146 1.16971 0.94121 0.91846 0.90211 0.88607 0.92093 0.93196 0.88746 0.92331 0.91751 0.88456 0.93298 0.92308 0.88673 0.91642 0.93043 0.90392 0.79964 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.98 71.98 0.65 -2.71 16 2 C -0.10 -2.64 3.52 -9.40 -0.03 -2.67 16 3 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.11 2.94 6.34 86.85 0.55 3.49 16 5 N -0.59 -18.67 3.33 -813.79 -2.71 -21.37 16 6 C 0.48 14.95 7.58 87.16 0.66 15.61 16 7 O -0.53 -16.92 13.64 -3.32 -0.05 -16.96 16 8 C 0.35 10.21 6.00 28.60 0.17 10.38 16 9 O -0.43 -14.35 13.74 -1.52 -0.02 -14.37 16 10 C -0.09 -1.95 0.76 -52.93 -0.04 -1.99 16 11 C -0.13 -2.46 7.76 71.98 0.56 -1.90 16 12 C -0.14 -2.79 8.29 71.98 0.60 -2.20 16 13 C -0.14 -2.38 8.29 71.98 0.60 -1.79 16 14 C 0.09 3.11 5.23 86.73 0.45 3.57 16 15 C 0.16 5.72 3.39 46.18 0.16 5.87 16 16 H 0.08 2.95 8.09 -2.39 -0.02 2.93 16 17 N -0.74 -32.31 4.26 -317.30 -1.35 -33.66 16 18 C -0.23 -12.42 10.44 84.03 0.88 -11.54 16 19 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 20 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 21 N -0.98 -62.17 13.97 21.65 0.30 -61.87 16 22 Si 0.94 44.89 27.73 68.60 1.90 46.80 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.25 -10.33 6.52 99.48 0.65 -9.68 16 26 H 0.04 1.24 6.26 -2.39 -0.01 1.22 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 2.33 8.04 -2.39 -0.02 2.31 16 30 H 0.06 1.82 8.04 -2.39 -0.02 1.80 16 31 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 34 H 0.06 1.49 6.43 -2.39 -0.02 1.48 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.36 6.43 -2.39 -0.02 1.34 16 40 H 0.05 2.16 7.60 -2.39 -0.02 2.14 16 41 H 0.08 2.53 7.58 -2.39 -0.02 2.51 16 42 H 0.37 15.70 4.10 -92.71 -0.38 15.32 16 43 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -67.84 339.75 4.30 -63.55 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.55 Total: 26.58 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 5.66 Total: 11.31 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -3.76 Total: -116.90 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.07 Total: -31.33 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.80 kcal Total: -67.84 4.30 -63.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054506640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.355 kcal (2) G-P(sol) polarization free energy of solvation -67.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds