Wall clock time and date at job start Tue Mar 31 2020 05:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.92193 * 2 1 4 4 C 1.54915 * 111.00370 * 236.09469 * 2 1 3 5 5 N 1.47425 * 104.83334 * 204.91773 * 4 2 1 6 6 C 1.34777 * 125.65136 * 204.16738 * 5 4 2 7 7 O 1.21282 * 119.99501 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00291 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46999 * 179.97438 * 8 6 5 10 10 O 1.42897 * 112.84817 * 53.80936 * 9 8 6 11 11 C 1.53777 * 113.61763 * 282.49708 * 9 8 6 12 12 C 1.53777 * 87.08176 * 220.02179 * 11 9 8 13 13 C 1.53777 * 87.08414 * 25.43098 * 12 11 9 14 14 C 1.47022 * 108.70334 * 24.12789 * 5 4 2 15 15 C 1.54327 * 107.27336 * 358.94217 * 14 5 4 16 16 H 1.08993 * 110.72079 * 96.16743 * 15 14 5 17 17 N 1.46496 * 110.72108 * 219.44674 * 15 14 5 18 18 C 1.36943 * 119.99804 * 273.54304 * 17 15 14 19 19 H 1.07998 * 119.99804 * 359.97438 * 18 17 15 20 20 C 1.38807 * 119.99940 * 180.02562 * 18 17 15 21 21 N 1.31627 * 119.99848 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00122 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47118 * 90.00579 * 22 20 18 24 24 H 1.48503 * 109.47267 * 210.00293 * 22 20 18 25 25 H 1.48491 * 109.47267 * 330.00445 * 22 20 18 26 26 H 1.09006 * 109.47371 * 296.09887 * 1 2 3 27 27 H 1.09002 * 109.47302 * 56.09664 * 1 2 3 28 28 H 1.08999 * 109.47292 * 176.09915 * 1 2 3 29 29 H 1.08997 * 110.36462 * 86.07767 * 4 2 1 30 30 H 1.08997 * 110.36247 * 323.75434 * 4 2 1 31 31 H 1.08998 * 109.47080 * 299.99828 * 8 6 5 32 32 H 1.09005 * 109.47183 * 59.99784 * 8 6 5 33 33 H 0.96705 * 113.99919 * 309.66170 * 10 9 8 34 34 H 1.09007 * 113.61407 * 334.56985 * 11 9 8 35 35 H 1.08992 * 113.61438 * 105.47248 * 11 9 8 36 36 H 1.09007 * 113.61425 * 270.88583 * 12 11 9 37 37 H 1.09005 * 113.61953 * 139.98135 * 12 11 9 38 38 H 1.09004 * 113.61949 * 220.01653 * 13 12 11 39 39 H 1.08999 * 113.61551 * 89.11510 * 13 12 11 40 40 H 1.08997 * 109.88723 * 239.52626 * 14 5 4 41 41 H 1.09000 * 110.01436 * 118.43179 * 14 5 4 42 42 H 0.96996 * 120.00232 * 93.54399 * 17 15 14 43 43 H 0.96999 * 119.99494 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7733 6 6 4.4480 -1.5604 -1.5939 7 8 4.3014 -1.4982 -2.7963 8 6 5.7717 -1.9924 -1.0176 9 6 6.7497 -2.2925 -2.1554 10 8 6.8804 -1.2070 -3.0755 11 6 6.5079 -3.6515 -2.8332 12 6 8.0367 -3.8094 -2.8844 13 6 8.0965 -2.8596 -1.6765 14 6 3.4674 -1.2742 0.6960 15 6 2.0861 -0.8079 1.2023 16 1 1.4467 -1.6631 1.4210 17 7 2.2286 0.0496 2.3814 18 6 2.3034 -0.5092 3.6294 19 1 2.2568 -1.5820 3.7443 20 6 2.4379 0.3034 4.7468 21 7 2.5092 -0.2337 5.9463 22 14 2.5177 2.1591 4.5480 23 1 1.1454 2.7231 4.6107 24 1 3.3414 2.7388 5.6392 25 1 3.1297 2.4905 3.2363 26 1 -0.3634 0.4521 0.9229 27 1 -0.3634 0.5732 -0.8529 28 1 -0.3634 -1.0253 -0.0699 29 1 2.1559 -0.1721 -2.0837 30 1 1.4518 -1.6705 -1.4023 31 1 6.1739 -1.1945 -0.3933 32 1 5.6302 -2.8893 -0.4146 33 1 6.0370 -0.8613 -3.3983 34 1 6.0151 -4.3794 -2.1887 35 1 6.0439 -3.5726 -3.8163 36 1 8.4883 -3.3970 -3.7868 37 1 8.3790 -4.8202 -2.6625 38 1 8.9151 -2.1415 -1.7257 39 1 8.0381 -3.3710 -0.7157 40 1 4.2425 -0.5998 1.0600 41 1 3.6661 -2.2884 1.0424 42 1 2.2701 1.0132 2.2782 43 1 2.6036 0.3341 6.7271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054642592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:41 Heat of formation + Delta-G solvation = -52.544485 kcal Electronic energy + Delta-G solvation = -22972.086835 eV Core-core repulsion = 19632.141125 eV Total energy + Delta-G solvation = -3339.945709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54825 -39.18865 -37.54037 -34.53600 -34.21134 -32.76479 -31.17819 -30.30396 -27.99699 -26.33639 -25.81121 -24.00429 -23.20888 -21.41348 -20.28937 -19.68436 -19.17787 -17.65730 -17.03355 -16.53616 -16.17158 -15.64450 -15.14414 -14.97310 -14.69038 -14.34105 -13.67289 -13.54707 -13.29729 -13.08063 -13.00659 -12.65089 -12.53728 -12.30812 -12.18556 -11.80077 -11.60699 -11.53035 -11.27948 -11.20910 -10.96096 -10.89409 -10.73250 -10.53506 -10.42602 -10.09265 -9.74383 -9.68778 -9.67925 -9.10505 -8.52716 -7.48173 -5.91546 -3.30095 2.60820 3.04147 3.27632 3.30574 3.37065 4.05549 4.33862 4.45983 4.48292 4.63245 4.68344 4.76376 4.93750 4.95758 5.06620 5.24387 5.35491 5.39021 5.45158 5.55687 5.60141 5.60633 5.61903 5.63974 5.69082 5.77305 5.80918 5.98072 5.99708 6.03983 6.15696 6.19439 6.25770 6.27197 6.35722 6.40633 6.66260 7.54572 7.80006 7.82047 8.18978 8.27053 9.03221 9.75548 9.93324 11.25968 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.004301 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.589912 B = 6508.511852 C = 7334.233094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 H 0.081 0.919 4 C 0.113 3.887 5 N -0.610 5.610 6 C 0.531 3.469 7 O -0.559 6.559 8 C -0.160 4.160 9 C 0.129 3.871 10 O -0.550 6.550 11 C -0.161 4.161 12 C -0.135 4.135 13 C -0.129 4.129 14 C 0.071 3.929 15 C 0.183 3.817 16 H 0.075 0.925 17 N -0.736 5.736 18 C -0.255 4.255 19 H 0.092 0.908 20 C 0.012 3.988 21 N -0.928 5.928 22 Si 0.883 3.117 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.277 1.277 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.389 0.611 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.364 0.636 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.367 -4.194 -15.441 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 H 0.100 0.900 4 C -0.010 4.010 5 N -0.342 5.342 6 C 0.321 3.679 7 O -0.440 6.440 8 C -0.200 4.200 9 C 0.087 3.913 10 O -0.362 6.362 11 C -0.198 4.198 12 C -0.172 4.172 13 C -0.166 4.166 14 C -0.055 4.055 15 C 0.071 3.929 16 H 0.093 0.907 17 N -0.377 5.377 18 C -0.385 4.385 19 H 0.110 0.890 20 C -0.185 4.185 21 N -0.574 5.574 22 Si 0.713 3.287 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.203 1.203 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.244 0.756 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.198 0.802 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.953 -4.425 -15.750 17.093 hybrid contribution -0.483 1.424 0.153 1.511 sum 4.470 -3.001 -15.596 16.499 Atomic orbital electron populations 1.21628 0.93578 1.01958 1.02119 1.22671 0.96602 0.99666 0.94819 0.90022 1.22275 0.82851 0.98218 0.97650 1.48581 1.12108 1.65310 1.08235 1.20318 0.84835 0.76633 0.86094 1.90508 1.83193 1.55563 1.14749 1.22322 0.92901 1.04445 1.00300 1.21794 0.94415 0.86836 0.88215 1.86313 1.37512 1.49931 1.62464 1.23561 0.96673 0.97497 1.02102 1.22742 0.96505 0.99298 0.98683 1.23069 0.96369 0.98498 0.98658 1.23311 1.03083 1.01823 0.77260 1.21209 0.91825 0.93837 0.86036 0.90665 1.42710 1.88649 1.04077 1.02296 1.19052 1.43793 0.94007 0.81624 0.88978 1.24672 1.01318 0.97400 0.95090 1.69698 1.56015 1.34372 0.97348 0.86594 0.77905 0.87139 0.77112 1.20888 1.21591 1.20309 0.91395 0.92989 0.92469 0.90773 0.91372 0.87988 0.87745 0.75627 0.89856 0.90714 0.89947 0.91463 0.90520 0.88772 0.90711 0.91629 0.80214 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.31 37.15 0.35 -1.32 16 2 C -0.12 -1.64 3.25 -88.47 -0.29 -1.93 16 3 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 4 C 0.11 1.50 6.38 -2.53 -0.02 1.49 16 5 N -0.61 -8.76 3.33 -170.52 -0.57 -9.33 16 6 C 0.53 7.66 7.61 -10.99 -0.08 7.58 16 7 O -0.56 -9.02 13.85 -14.26 -0.20 -9.22 16 8 C -0.16 -1.94 4.53 -27.89 -0.13 -2.07 16 9 C 0.13 1.59 1.10 -89.81 -0.10 1.49 16 10 O -0.55 -7.90 13.39 -55.05 -0.74 -8.63 16 11 C -0.16 -1.81 7.17 -25.92 -0.19 -1.99 16 12 C -0.13 -1.34 8.02 -25.92 -0.21 -1.55 16 13 C -0.13 -1.33 7.47 -25.92 -0.19 -1.52 16 14 C 0.07 1.10 6.24 -3.06 -0.02 1.08 16 15 C 0.18 3.08 3.06 -66.09 -0.20 2.87 16 16 H 0.08 1.30 8.02 -51.93 -0.42 0.88 16 17 N -0.74 -15.58 4.98 -51.65 -0.26 -15.84 16 18 C -0.26 -6.59 10.46 -15.06 -0.16 -6.74 16 19 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 20 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 21 N -0.93 -27.63 13.97 55.49 0.78 -26.86 16 22 Si 0.88 20.84 27.74 -169.99 -4.71 16.13 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 29 H 0.07 0.98 8.04 -51.93 -0.42 0.57 16 30 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.10 1.11 8.05 -51.93 -0.42 0.69 16 33 H 0.39 5.62 6.19 45.56 0.28 5.91 16 34 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 40 H 0.07 1.24 8.03 -51.93 -0.42 0.83 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.36 7.71 5.58 -40.82 -0.23 7.48 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -29.76 343.67 -8.52 -38.28 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -6.67 Total: 12.68 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -1.33 Total: -2.39 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.05 Total: -52.02 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.93 Total: -17.85 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.71 Total: 16.13 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.76 -8.52 -38.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054642592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.262 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds