Wall clock time and date at job start Tue Mar 31 2020 05:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.91734 * 2 1 4 4 C 1.55387 * 111.19017 * 235.93155 * 2 1 3 5 5 N 1.47422 * 104.87396 * 204.97906 * 4 2 1 6 6 C 1.34785 * 125.64364 * 204.16430 * 5 4 2 7 7 O 1.21274 * 120.00184 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99347 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47033 * 180.02562 * 8 6 5 10 10 O 1.42901 * 112.84750 * 53.80245 * 9 8 6 11 11 C 1.53779 * 113.61466 * 282.50507 * 9 8 6 12 12 C 1.53784 * 87.08092 * 220.01457 * 11 9 8 13 13 C 1.53775 * 113.61598 * 185.00247 * 9 8 6 14 14 C 1.47015 * 108.70452 * 24.13609 * 5 4 2 15 15 C 1.54328 * 107.27332 * 358.94101 * 14 5 4 16 16 H 1.08999 * 110.71544 * 219.26545 * 15 14 5 17 17 N 1.46494 * 110.72038 * 96.16457 * 15 14 5 18 18 C 1.36945 * 119.99612 * 88.84876 * 17 15 14 19 19 H 1.07999 * 120.00077 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99637 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99539 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00216 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46712 * 90.00052 * 22 20 18 24 24 H 1.48499 * 109.46916 * 209.99467 * 22 20 18 25 25 H 1.48492 * 109.46909 * 330.00070 * 22 20 18 26 26 H 1.09007 * 109.46831 * 296.10330 * 1 2 3 27 27 H 1.08998 * 109.46744 * 56.09940 * 1 2 3 28 28 H 1.08996 * 109.47135 * 176.10293 * 1 2 3 29 29 H 1.09008 * 110.33753 * 86.13450 * 4 2 1 30 30 H 1.08998 * 110.44285 * 323.89131 * 4 2 1 31 31 H 1.08998 * 109.47909 * 300.00571 * 8 6 5 32 32 H 1.09000 * 109.47097 * 60.00944 * 8 6 5 33 33 H 0.96702 * 114.00573 * 309.67476 * 10 9 8 34 34 H 1.08998 * 113.61380 * 334.55677 * 11 9 8 35 35 H 1.08998 * 113.61967 * 105.46668 * 11 9 8 36 36 H 1.09000 * 113.61367 * 270.88208 * 12 11 9 37 37 H 1.09001 * 113.69155 * 139.98704 * 12 11 9 38 38 H 1.08997 * 113.61580 * 254.52602 * 13 9 8 39 39 H 1.08998 * 113.61533 * 25.43245 * 13 9 8 40 40 H 1.08998 * 109.88492 * 239.51764 * 14 5 4 41 41 H 1.09010 * 110.01078 * 118.42530 * 14 5 4 42 42 H 0.96995 * 120.00290 * 269.11767 * 17 15 14 43 43 H 0.97005 * 119.99727 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0917 -0.8116 -1.2001 5 7 3.4327 -1.2461 -0.7686 6 6 4.4560 -1.5645 -1.5860 7 8 4.3125 -1.5051 -2.7888 8 6 5.7785 -1.9942 -1.0052 9 6 6.7601 -2.2950 -2.1397 10 8 6.8923 -1.2107 -3.0611 11 6 6.5216 -3.6551 -2.8164 12 6 8.0507 -3.8116 -2.8630 13 6 8.1061 -2.8601 -1.6561 14 6 3.4691 -1.2741 0.7008 15 6 2.0861 -0.8078 1.2024 16 1 2.1892 -0.1705 2.0806 17 7 1.2268 -1.9573 1.4964 18 6 1.2430 -2.5230 2.7434 19 1 1.8894 -2.1220 3.5100 20 6 0.4283 -3.6118 3.0221 21 7 0.4435 -4.1552 4.2209 22 14 -0.6904 -4.3050 1.6964 23 1 0.0337 -5.3564 0.9378 24 1 -1.8993 -4.8934 2.3269 25 1 -1.0946 -3.2164 0.7710 26 1 -0.3633 0.4522 0.9229 27 1 -0.3633 0.5732 -0.8530 28 1 -0.3633 -1.0252 -0.0698 29 1 2.1644 -0.1787 -2.0847 30 1 1.4599 -1.6761 -1.4041 31 1 6.1785 -1.1948 -0.3815 32 1 5.6360 -2.8900 -0.4007 33 1 6.0495 -0.8662 -3.3868 34 1 6.0278 -4.3826 -2.1722 35 1 6.0603 -3.5781 -3.8009 36 1 8.5044 -3.4001 -3.7646 37 1 8.3947 -4.8214 -2.6390 38 1 8.9240 -2.1412 -1.7041 39 1 8.0454 -3.3701 -0.6947 40 1 4.2428 -0.5985 1.0654 41 1 3.6676 -2.2876 1.0498 42 1 0.6493 -2.3201 0.8067 43 1 -0.1255 -4.9164 4.4156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054642594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:43 Heat of formation + Delta-G solvation = -49.352736 kcal Electronic energy + Delta-G solvation = -23238.916384 eV Core-core repulsion = 19899.109079 eV Total energy + Delta-G solvation = -3339.807305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.51918 -39.19938 -37.56577 -34.50418 -34.09387 -32.63460 -30.99080 -30.25590 -28.22298 -26.27416 -25.78241 -23.83925 -23.24590 -22.00127 -19.69179 -19.54932 -19.06999 -17.97440 -16.97469 -16.42334 -16.10363 -15.60447 -15.11474 -14.90564 -14.56569 -14.36857 -14.09366 -13.42493 -13.30518 -13.13968 -12.79395 -12.56227 -12.39751 -12.19896 -12.12063 -11.84918 -11.57235 -11.54386 -11.26244 -11.11505 -10.93642 -10.89215 -10.62143 -10.49364 -10.38910 -10.09681 -9.69958 -9.66911 -9.64296 -9.11546 -8.47033 -7.45508 -5.90861 -3.28278 2.65911 3.10862 3.26707 3.30328 3.36968 4.06866 4.37780 4.46444 4.50830 4.65043 4.71050 4.78871 4.98675 5.02643 5.11737 5.23919 5.28624 5.39287 5.45762 5.56509 5.58298 5.63360 5.66444 5.73385 5.73880 5.82749 5.92709 6.01160 6.02407 6.10004 6.16474 6.20204 6.28582 6.32146 6.41051 6.55524 6.62833 7.60199 7.82472 7.83617 8.23726 8.27912 9.04752 9.77253 9.95554 11.26786 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019202 B = 0.004679 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.806552 B = 5982.914887 C = 6663.817036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 H 0.084 0.916 4 C 0.111 3.889 5 N -0.605 5.605 6 C 0.531 3.469 7 O -0.559 6.559 8 C -0.159 4.159 9 C 0.129 3.871 10 O -0.551 6.551 11 C -0.162 4.162 12 C -0.135 4.135 13 C -0.128 4.128 14 C 0.069 3.931 15 C 0.178 3.822 16 H 0.081 0.919 17 N -0.736 5.736 18 C -0.252 4.252 19 H 0.093 0.907 20 C 0.012 3.988 21 N -0.928 5.928 22 Si 0.879 3.121 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.276 1.276 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.389 0.611 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.364 0.636 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.825 6.012 -10.826 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 H 0.103 0.897 4 C -0.011 4.011 5 N -0.337 5.337 6 C 0.320 3.680 7 O -0.441 6.441 8 C -0.199 4.199 9 C 0.087 3.913 10 O -0.363 6.363 11 C -0.199 4.199 12 C -0.172 4.172 13 C -0.165 4.165 14 C -0.057 4.057 15 C 0.066 3.934 16 H 0.099 0.901 17 N -0.379 5.379 18 C -0.382 4.382 19 H 0.111 0.889 20 C -0.185 4.185 21 N -0.575 5.575 22 Si 0.709 3.291 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.202 1.202 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.244 0.756 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.198 0.802 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.431 5.852 -11.106 16.322 hybrid contribution -1.488 -0.654 -0.777 1.801 sum 8.943 5.198 -11.883 15.755 Atomic orbital electron populations 1.21572 0.93520 1.02429 1.01537 1.22752 0.96822 0.98864 0.95238 0.89750 1.22360 0.83009 0.98228 0.97518 1.48509 1.11934 1.65173 1.08091 1.20287 0.84859 0.76662 0.86151 1.90506 1.83338 1.55514 1.14724 1.22313 0.92883 1.04393 1.00274 1.21791 0.94346 0.86877 0.88242 1.86300 1.37568 1.50066 1.62364 1.23570 0.96632 0.97531 1.02198 1.22741 0.96557 0.99314 0.98620 1.23061 0.96273 0.98481 0.98701 1.23294 1.01515 1.02706 0.78193 1.21169 0.87856 0.89199 0.95157 0.90107 1.42792 1.48269 1.34556 1.12238 1.19052 1.21023 1.10085 0.88023 0.88932 1.24649 0.99441 0.98224 0.96149 1.69692 1.42623 1.25540 1.19651 0.86657 0.81243 0.79223 0.81940 1.21087 1.21538 1.20207 0.91614 0.93294 0.92081 0.90945 0.91669 0.88210 0.87630 0.75614 0.89749 0.90712 0.89978 0.91449 0.90584 0.88780 0.92075 0.90045 0.80217 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.86 37.16 0.33 -1.53 16 2 C -0.12 -1.62 3.53 -88.21 -0.31 -1.93 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.11 1.64 6.37 -2.27 -0.01 1.63 16 5 N -0.61 -9.10 3.33 -170.22 -0.57 -9.66 16 6 C 0.53 7.96 7.61 -10.98 -0.08 7.87 16 7 O -0.56 -9.46 13.85 -14.25 -0.20 -9.66 16 8 C -0.16 -1.95 4.53 -27.88 -0.13 -2.07 16 9 C 0.13 1.62 1.10 -89.81 -0.10 1.52 16 10 O -0.55 -7.86 13.39 -55.04 -0.74 -8.60 16 11 C -0.16 -1.97 7.16 -25.92 -0.19 -2.15 16 12 C -0.13 -1.41 8.02 -25.91 -0.21 -1.61 16 13 C -0.13 -1.33 7.47 -25.92 -0.19 -1.52 16 14 C 0.07 1.03 6.23 -3.07 -0.02 1.01 16 15 C 0.18 2.95 3.37 -66.09 -0.22 2.73 16 16 H 0.08 1.34 8.11 -51.93 -0.42 0.91 16 17 N -0.74 -15.51 4.35 -51.65 -0.22 -15.74 16 18 C -0.25 -6.49 10.45 -15.06 -0.16 -6.64 16 19 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 20 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 21 N -0.93 -27.71 13.97 55.49 0.78 -26.94 16 22 Si 0.88 21.08 27.73 -169.99 -4.71 16.36 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.15 6.52 56.52 0.37 -5.79 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.98 6.45 -51.93 -0.33 0.64 16 29 H 0.07 1.02 8.04 -51.92 -0.42 0.60 16 30 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.11 1.21 8.05 -51.93 -0.42 0.80 16 33 H 0.39 5.63 6.20 45.56 0.28 5.91 16 34 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.38 8.04 -51.92 -0.42 0.96 16 42 H 0.36 7.75 4.08 -40.82 -0.17 7.59 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 340.32 15.07 5.13 5.13 Total: -1.00 -29.93 340.32 -8.47 -38.39 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -6.54 Total: 13.18 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.39 Total: -2.47 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.02 Total: -52.34 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.93 Total: -18.26 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.71 Total: 16.36 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.93 -8.47 -38.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054642594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.961 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds