Wall clock time and date at job start Tue Mar 31 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.89078 * 2 1 4 4 C 1.54910 * 111.00342 * 123.92816 * 2 1 3 5 5 N 1.47426 * 104.83306 * 155.08481 * 4 2 1 6 6 C 1.34775 * 125.64633 * 155.91253 * 5 4 2 7 7 O 1.21279 * 120.00482 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99671 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47189 * 180.02562 * 8 6 5 10 10 O 1.42901 * 112.84392 * 55.33579 * 9 8 6 11 11 C 1.53784 * 113.61450 * 284.14375 * 9 8 6 12 12 C 1.53957 * 87.01552 * 220.04367 * 11 9 8 13 13 C 1.53781 * 113.61564 * 186.53001 * 9 8 6 14 14 C 1.47016 * 108.70256 * 335.86822 * 5 4 2 15 15 C 1.54325 * 107.27525 * 1.06162 * 14 5 4 16 16 H 1.08995 * 110.87633 * 140.62307 * 15 14 5 17 17 N 1.46499 * 110.72022 * 263.83103 * 15 14 5 18 18 C 1.36931 * 120.00122 * 268.51864 * 17 15 14 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 H 1.09000 * 109.47275 * 183.87674 * 1 2 3 27 27 H 1.08999 * 109.47291 * 303.87924 * 1 2 3 28 28 H 1.09009 * 109.46939 * 63.88252 * 1 2 3 29 29 H 1.09009 * 110.36301 * 273.92072 * 4 2 1 30 30 H 1.08993 * 110.36740 * 36.13265 * 4 2 1 31 31 H 1.08996 * 109.47772 * 300.00171 * 8 6 5 32 32 H 1.09001 * 109.47340 * 60.01034 * 8 6 5 33 33 H 0.96700 * 114.00685 * 309.66363 * 10 9 8 34 34 H 1.08997 * 113.61035 * 334.56361 * 11 9 8 35 35 H 1.08993 * 113.61378 * 105.46573 * 11 9 8 36 36 H 1.09002 * 113.54037 * 270.80913 * 12 11 9 37 37 H 1.09003 * 113.74333 * 139.93919 * 12 11 9 38 38 H 1.08999 * 113.61560 * 254.52793 * 13 9 8 39 39 H 1.08995 * 113.61469 * 25.35175 * 13 9 8 40 40 H 1.08999 * 109.88636 * 241.64308 * 14 5 4 41 41 H 1.09006 * 109.88465 * 120.48027 * 14 5 4 42 42 H 0.97001 * 119.99790 * 88.51381 * 17 15 14 43 43 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8072 1.1999 5 7 3.4271 -1.2434 0.7728 6 6 4.4475 -1.5624 1.5934 7 8 4.3004 -1.5022 2.7958 8 6 5.7710 -1.9950 1.0169 9 6 6.7485 -2.2972 2.1546 10 8 6.2424 -3.2620 3.0793 11 6 7.3179 -1.0376 2.8284 12 6 8.6693 -1.7734 2.8791 13 6 8.1789 -2.5948 1.6749 14 6 3.4674 -1.2739 -0.6965 15 6 2.0861 -0.8074 -1.2026 16 1 2.1892 -0.1698 -2.0806 17 7 1.2268 -1.9568 -1.4971 18 6 1.2057 -2.4908 -2.7578 19 1 1.8230 -2.0649 -3.5350 20 6 0.3911 -3.5795 -3.0370 21 7 -0.3608 -4.0989 -2.0897 22 14 0.3683 -4.3128 -4.7549 23 1 -0.5716 -5.4619 -4.7901 24 1 -0.0742 -3.2814 -5.7274 25 1 1.7324 -4.7779 -5.1128 26 1 -0.3634 -1.0253 0.0695 27 1 -0.3634 0.5729 0.8532 28 1 -0.3633 0.4524 -0.9228 29 1 2.1559 -0.1728 2.0836 30 1 1.4507 -1.6699 1.4029 31 1 5.6288 -2.8911 0.4130 32 1 6.1741 -1.1968 0.3936 33 1 5.3520 -3.0678 3.4026 34 1 7.3223 -0.1604 2.1814 35 1 6.8915 -0.8376 3.8113 36 1 8.8090 -2.3654 3.7836 37 1 9.5246 -1.1364 2.6538 38 1 8.4466 -3.6501 1.7282 39 1 8.4187 -2.1454 0.7114 40 1 3.6650 -2.2890 -1.0410 41 1 4.2426 -0.5994 -1.0602 42 1 0.6727 -2.3396 -0.7989 43 1 -0.9298 -4.8599 -2.2847 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054642596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:48 Heat of formation + Delta-G solvation = -53.673183 kcal Electronic energy + Delta-G solvation = -23130.041414 eV Core-core repulsion = 19790.046760 eV Total energy + Delta-G solvation = -3339.994654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43269 -39.10115 -37.42891 -34.43000 -33.96764 -32.54497 -30.65552 -30.14088 -27.78602 -26.12735 -25.77290 -23.93735 -23.28682 -22.00598 -19.65343 -19.35291 -18.98839 -17.61716 -16.84822 -16.32923 -15.87973 -15.55267 -15.11994 -14.87724 -14.53953 -14.23666 -13.81147 -13.37562 -13.27113 -12.96206 -12.87102 -12.43585 -12.37746 -12.01394 -11.98889 -11.63277 -11.49369 -11.23140 -11.17477 -10.96564 -10.92514 -10.81697 -10.52279 -10.45337 -10.33211 -10.00162 -9.72335 -9.62792 -9.55755 -9.05936 -8.34667 -7.12797 -5.88606 -3.19225 2.76082 3.22527 3.36707 3.41731 3.43086 4.10727 4.44828 4.48404 4.53387 4.69483 4.75376 4.87854 5.12034 5.18695 5.24423 5.31494 5.43496 5.48761 5.57355 5.59581 5.65304 5.67014 5.72394 5.83410 5.87629 5.90925 6.03463 6.11958 6.20133 6.21908 6.28564 6.29439 6.32098 6.47404 6.55038 6.69205 6.89020 7.58254 7.71557 7.90702 8.28765 8.33682 9.40915 9.94982 10.29741 11.33261 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.004298 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.060761 B = 6512.459741 C = 7327.537776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.116 4.116 3 H 0.077 0.923 4 C 0.113 3.887 5 N -0.603 5.603 6 C 0.529 3.471 7 O -0.561 6.561 8 C -0.159 4.159 9 C 0.130 3.870 10 O -0.549 6.549 11 C -0.160 4.160 12 C -0.135 4.135 13 C -0.129 4.129 14 C 0.069 3.931 15 C 0.172 3.828 16 H 0.073 0.927 17 N -0.711 5.711 18 C -0.250 4.250 19 H 0.072 0.928 20 C -0.006 4.006 21 N -0.929 5.929 22 Si 0.908 3.092 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.390 0.610 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.387 0.613 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.233 8.191 5.924 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.136 4.136 3 H 0.096 0.904 4 C -0.009 4.009 5 N -0.334 5.334 6 C 0.319 3.681 7 O -0.442 6.442 8 C -0.199 4.199 9 C 0.088 3.912 10 O -0.361 6.361 11 C -0.197 4.197 12 C -0.172 4.172 13 C -0.166 4.166 14 C -0.057 4.057 15 C 0.060 3.940 16 H 0.091 0.909 17 N -0.351 5.351 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.212 1.212 25 H -0.212 1.212 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.244 0.756 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.222 0.778 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.746 7.845 6.292 16.236 hybrid contribution -0.771 -0.379 -0.804 1.177 sum 11.975 7.466 5.489 15.141 Atomic orbital electron populations 1.21531 0.93291 1.03015 1.00909 1.22654 0.97068 0.98415 0.95450 0.90427 1.22283 0.82895 0.98409 0.97341 1.48487 1.11942 1.65024 1.07993 1.20242 0.84963 0.76745 0.86167 1.90529 1.83488 1.55438 1.14745 1.22301 0.93398 1.03931 1.00227 1.21781 0.91590 0.89580 0.88231 1.86306 1.38613 1.49062 1.62110 1.23578 0.96689 0.97318 1.02158 1.22775 0.96889 0.98844 0.98726 1.23056 0.93416 1.01584 0.98535 1.23351 1.01718 1.02265 0.78411 1.21204 0.88182 0.89903 0.94755 0.90865 1.42424 1.48872 1.33003 1.10828 1.19188 1.20952 1.10243 0.87745 0.91028 1.24752 0.99186 0.98702 0.97693 1.69649 1.29911 1.26141 1.31877 0.86273 0.77322 0.78588 0.83979 1.21673 1.21172 1.21198 0.91177 0.93755 0.92108 0.91275 0.91181 0.88021 0.88097 0.75558 0.90002 0.90651 0.89944 0.91557 0.90524 0.88929 0.90361 0.92628 0.77770 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.85 37.15 0.33 -1.66 16 2 C -0.12 -1.74 3.51 -88.47 -0.31 -2.05 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.11 1.80 6.33 -2.53 -0.02 1.79 16 5 N -0.60 -9.63 3.33 -170.52 -0.57 -10.20 16 6 C 0.53 8.35 7.59 -10.99 -0.08 8.26 16 7 O -0.56 -9.93 13.88 -13.60 -0.19 -10.12 16 8 C -0.16 -2.03 4.52 -27.88 -0.13 -2.16 16 9 C 0.13 1.68 1.09 -89.80 -0.10 1.58 16 10 O -0.55 -8.45 13.40 -54.39 -0.73 -9.18 16 11 C -0.16 -1.86 7.08 -25.82 -0.18 -2.05 16 12 C -0.13 -1.38 8.02 -25.82 -0.21 -1.58 16 13 C -0.13 -1.36 7.48 -25.92 -0.19 -1.55 16 14 C 0.07 1.09 6.23 -3.07 -0.02 1.07 16 15 C 0.17 3.02 3.39 -66.09 -0.22 2.79 16 16 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 17 N -0.71 -16.02 4.50 -51.65 -0.23 -16.25 16 18 C -0.25 -6.38 9.96 -15.06 -0.15 -6.53 16 19 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 21 N -0.93 -26.69 13.06 55.49 0.72 -25.96 16 22 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.07 1.26 6.48 -51.93 -0.34 0.92 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 29 H 0.07 1.06 8.04 -51.92 -0.42 0.64 16 30 H 0.07 1.24 7.98 -51.93 -0.41 0.82 16 31 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.10 1.07 8.09 -51.93 -0.42 0.65 16 33 H 0.39 6.16 6.33 45.56 0.29 6.44 16 34 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.80 8.10 -51.93 -0.42 0.37 16 40 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.39 9.46 6.31 -40.82 -0.26 9.21 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -29.13 343.51 -8.80 -37.93 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -6.58 Total: 14.68 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.38 Total: -2.36 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.07 Total: -52.41 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.92 Total: -19.30 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.13 -8.80 -37.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054642596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.738 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds