Wall clock time and date at job start Tue Mar 31 2020 05:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.89078 * 2 1 4 4 C 1.54910 * 111.00342 * 123.92816 * 2 1 3 5 5 N 1.47426 * 104.83306 * 155.08481 * 4 2 1 6 6 C 1.34775 * 125.64633 * 155.91253 * 5 4 2 7 7 O 1.21279 * 120.00482 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99671 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47189 * 180.02562 * 8 6 5 10 10 O 1.42901 * 112.84392 * 55.33579 * 9 8 6 11 11 C 1.53784 * 113.61450 * 284.14375 * 9 8 6 12 12 C 1.53957 * 87.01552 * 220.04367 * 11 9 8 13 13 C 1.53781 * 113.61564 * 186.53001 * 9 8 6 14 14 C 1.47016 * 108.70256 * 335.86822 * 5 4 2 15 15 C 1.54325 * 107.27525 * 1.06162 * 14 5 4 16 16 H 1.08995 * 110.87633 * 140.62307 * 15 14 5 17 17 N 1.46499 * 110.72022 * 263.83103 * 15 14 5 18 18 C 1.36931 * 120.00122 * 268.51864 * 17 15 14 19 19 H 1.08002 * 120.00098 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00187 * 180.27849 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71963 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72083 * 22 20 18 26 26 H 1.09000 * 109.47275 * 183.87674 * 1 2 3 27 27 H 1.08999 * 109.47291 * 303.87924 * 1 2 3 28 28 H 1.09009 * 109.46939 * 63.88252 * 1 2 3 29 29 H 1.09009 * 110.36301 * 273.92072 * 4 2 1 30 30 H 1.08993 * 110.36740 * 36.13265 * 4 2 1 31 31 H 1.08996 * 109.47772 * 300.00171 * 8 6 5 32 32 H 1.09001 * 109.47340 * 60.01034 * 8 6 5 33 33 H 0.96700 * 114.00685 * 309.66363 * 10 9 8 34 34 H 1.08997 * 113.61035 * 334.56361 * 11 9 8 35 35 H 1.08993 * 113.61378 * 105.46573 * 11 9 8 36 36 H 1.09002 * 113.54037 * 270.80913 * 12 11 9 37 37 H 1.09003 * 113.74333 * 139.93919 * 12 11 9 38 38 H 1.08999 * 113.61560 * 254.52793 * 13 9 8 39 39 H 1.08995 * 113.61469 * 25.35175 * 13 9 8 40 40 H 1.08999 * 109.88636 * 241.64308 * 14 5 4 41 41 H 1.09006 * 109.88465 * 120.48027 * 14 5 4 42 42 H 0.97001 * 119.99790 * 88.51381 * 17 15 14 43 43 H 0.97005 * 119.99717 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8072 1.1999 5 7 3.4271 -1.2434 0.7728 6 6 4.4475 -1.5624 1.5934 7 8 4.3004 -1.5022 2.7958 8 6 5.7710 -1.9950 1.0169 9 6 6.7485 -2.2972 2.1546 10 8 6.2424 -3.2620 3.0793 11 6 7.3179 -1.0376 2.8284 12 6 8.6693 -1.7734 2.8791 13 6 8.1789 -2.5948 1.6749 14 6 3.4674 -1.2739 -0.6965 15 6 2.0861 -0.8074 -1.2026 16 1 2.1892 -0.1698 -2.0806 17 7 1.2268 -1.9568 -1.4971 18 6 1.2057 -2.4908 -2.7578 19 1 1.8230 -2.0649 -3.5350 20 6 0.3911 -3.5795 -3.0370 21 7 -0.3608 -4.0989 -2.0897 22 14 0.3683 -4.3128 -4.7549 23 1 -0.5716 -5.4619 -4.7901 24 1 -0.0742 -3.2814 -5.7274 25 1 1.7324 -4.7779 -5.1128 26 1 -0.3634 -1.0253 0.0695 27 1 -0.3634 0.5729 0.8532 28 1 -0.3633 0.4524 -0.9228 29 1 2.1559 -0.1728 2.0836 30 1 1.4507 -1.6699 1.4029 31 1 5.6288 -2.8911 0.4130 32 1 6.1741 -1.1968 0.3936 33 1 5.3520 -3.0678 3.4026 34 1 7.3223 -0.1604 2.1814 35 1 6.8915 -0.8376 3.8113 36 1 8.8090 -2.3654 3.7836 37 1 9.5246 -1.1364 2.6538 38 1 8.4466 -3.6501 1.7282 39 1 8.4187 -2.1454 0.7114 40 1 3.6650 -2.2890 -1.0410 41 1 4.2426 -0.5994 -1.0602 42 1 0.6727 -2.3396 -0.7989 43 1 -0.9298 -4.8599 -2.2847 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054642596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:47 Heat of formation + Delta-G solvation = -72.141665 kcal Electronic energy + Delta-G solvation = -23130.842267 eV Core-core repulsion = 19790.046760 eV Total energy + Delta-G solvation = -3340.795507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.58197 -40.24551 -38.70919 -35.75260 -35.41047 -33.99913 -32.31505 -31.25509 -29.31469 -27.34395 -26.63638 -25.75856 -24.36561 -23.29583 -20.74427 -20.55353 -20.24434 -19.39821 -18.11741 -17.50839 -17.13296 -16.71942 -16.42697 -16.24422 -15.75074 -15.59344 -15.32115 -14.71622 -14.54248 -14.41638 -14.03556 -13.64498 -13.42643 -13.30457 -13.15093 -13.03619 -12.86510 -12.74808 -12.53835 -12.31917 -12.17984 -12.13846 -11.98840 -11.75905 -11.47548 -11.45836 -11.35117 -10.95896 -10.71693 -10.61892 -9.65809 -9.00473 -7.91360 -5.19646 1.51176 1.52421 1.53143 1.58381 2.01221 2.58754 3.13514 3.33925 3.40698 3.62329 3.69346 3.74149 3.89126 3.91979 3.93439 4.09596 4.14216 4.38412 4.43615 4.48357 4.61630 4.65136 4.70441 4.72799 4.79764 4.84837 4.88454 4.98225 5.01011 5.05988 5.13498 5.20524 5.26191 5.31633 5.33896 5.45537 5.54690 5.60474 6.29682 6.49520 6.71687 7.10114 7.37402 8.12046 8.34238 9.31729 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.004298 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.060761 B = 6512.459741 C = 7327.537776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 H 0.110 0.890 4 C 0.113 3.887 5 N -0.606 5.606 6 C 0.523 3.477 7 O -0.584 6.584 8 C -0.151 4.151 9 C 0.110 3.890 10 O -0.568 6.568 11 C -0.158 4.158 12 C -0.129 4.129 13 C -0.121 4.121 14 C 0.079 3.921 15 C 0.161 3.839 16 H 0.086 0.914 17 N -0.723 5.723 18 C -0.237 4.237 19 H 0.084 0.916 20 C -0.072 4.072 21 N -0.970 5.970 22 Si 0.967 3.033 23 H -0.304 1.304 24 H -0.277 1.277 25 H -0.279 1.279 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.384 0.616 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.120 0.880 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.374 0.626 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.458 10.249 4.752 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.120 4.120 3 H 0.128 0.872 4 C -0.010 4.010 5 N -0.338 5.338 6 C 0.314 3.686 7 O -0.467 6.467 8 C -0.190 4.190 9 C 0.068 3.932 10 O -0.379 6.379 11 C -0.196 4.196 12 C -0.167 4.167 13 C -0.158 4.158 14 C -0.046 4.046 15 C 0.050 3.950 16 H 0.104 0.896 17 N -0.362 5.362 18 C -0.369 4.369 19 H 0.102 0.898 20 C -0.265 4.265 21 N -0.621 5.621 22 Si 0.797 3.203 23 H -0.231 1.231 24 H -0.203 1.203 25 H -0.205 1.205 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.117 0.883 32 H 0.151 0.849 33 H 0.237 0.763 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.138 0.862 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.207 0.793 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.027 9.952 5.104 18.733 hybrid contribution -1.426 -0.938 -0.368 1.746 sum 13.601 9.014 4.736 16.990 Atomic orbital electron populations 1.21457 0.93729 1.01213 1.01821 1.22609 0.96598 0.99371 0.93438 0.87167 1.22224 0.82853 0.97656 0.98223 1.48576 1.11909 1.65157 1.08116 1.20836 0.85808 0.76057 0.85894 1.90523 1.84019 1.56243 1.15896 1.22338 0.91647 1.04688 1.00344 1.22192 0.92699 0.90094 0.88174 1.86294 1.38216 1.50386 1.62979 1.23591 0.97247 0.97483 1.01275 1.22745 0.97026 0.98684 0.98202 1.23135 0.91218 1.01573 0.99916 1.23127 1.01430 1.01795 0.78241 1.21505 0.88361 0.88721 0.96367 0.89616 1.42590 1.49701 1.34328 1.09606 1.19638 1.19120 1.09122 0.88971 0.89778 1.25479 1.00085 1.00081 1.00827 1.69816 1.31638 1.26902 1.33716 0.85303 0.77069 0.77454 0.80456 1.23089 1.20283 1.20475 0.94560 0.91253 0.92466 0.90449 0.93929 0.88297 0.84949 0.76309 0.88201 0.92743 0.91137 0.89090 0.91205 0.86158 0.92665 0.88711 0.79329 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.71 8.85 71.98 0.64 -3.07 16 2 C -0.10 -2.81 3.51 -9.40 -0.03 -2.84 16 3 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.11 3.51 6.33 86.86 0.55 4.06 16 5 N -0.61 -18.41 3.33 -811.80 -2.70 -21.11 16 6 C 0.52 15.82 7.59 87.66 0.67 16.48 16 7 O -0.58 -20.54 13.88 15.29 0.21 -20.33 16 8 C -0.15 -3.51 4.52 29.85 0.13 -3.37 16 9 C 0.11 2.65 1.09 -10.26 -0.01 2.64 16 10 O -0.57 -17.57 13.40 -130.66 -1.75 -19.32 16 11 C -0.16 -3.38 7.08 31.18 0.22 -3.15 16 12 C -0.13 -2.32 8.02 31.18 0.25 -2.07 16 13 C -0.12 -2.23 7.48 31.12 0.23 -2.00 16 14 C 0.08 2.33 6.23 86.73 0.54 2.87 16 15 C 0.16 5.32 3.39 46.18 0.16 5.48 16 16 H 0.09 2.66 8.09 -2.39 -0.02 2.64 16 17 N -0.72 -32.52 4.50 -317.32 -1.43 -33.95 16 18 C -0.24 -11.94 9.96 84.03 0.84 -11.11 16 19 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.97 -57.46 13.06 21.65 0.28 -57.17 16 22 Si 0.97 44.06 29.55 68.60 2.03 46.09 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 26 H 0.04 1.33 6.48 -2.39 -0.02 1.31 16 27 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.08 2.27 8.04 -2.38 -0.02 2.25 16 30 H 0.04 1.55 7.98 -2.39 -0.02 1.53 16 31 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.13 2.22 8.09 -2.39 -0.02 2.20 16 33 H 0.38 12.52 6.33 -74.06 -0.47 12.05 16 34 H 0.10 1.75 8.06 -2.39 -0.02 1.73 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.12 1.54 8.10 -2.39 -0.02 1.53 16 40 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 41 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.37 18.81 6.31 -92.71 -0.58 18.22 16 43 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -64.51 343.51 1.24 -63.27 By element: Atomic # 1 Polarization: 42.14 SS G_CDS: -0.05 Total: 42.09 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 4.65 Total: 0.44 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.85 Total: -112.24 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.54 Total: -39.65 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -64.51 1.24 -63.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054642596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.876 kcal (2) G-P(sol) polarization free energy of solvation -64.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds