Wall clock time and date at job start Tue Mar 31 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21272 * 120.00063 * 2 1 4 4 N 1.34780 * 119.99881 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.63110 * 354.55669 * 4 2 1 6 6 C 1.53192 * 108.77148 * 233.62591 * 5 4 2 7 7 C 1.53034 * 109.31645 * 305.36426 * 6 5 4 8 8 C 1.52996 * 109.46407 * 181.38444 * 7 6 5 9 9 H 1.09006 * 109.86956 * 59.27581 * 8 7 6 10 10 O 1.43741 * 109.88106 * 298.26738 * 8 7 6 11 11 C 1.44572 * 106.87138 * 214.16958 * 10 8 7 12 12 C 1.54997 * 103.58812 * 39.87742 * 11 10 8 13 13 C 1.54101 * 109.88427 * 180.27801 * 8 7 6 14 14 H 1.09009 * 110.48543 * 2.64667 * 13 8 7 15 15 N 1.46503 * 110.48999 * 240.13549 * 13 8 7 16 16 C 1.36933 * 119.99949 * 155.00023 * 15 13 8 17 17 H 1.08002 * 120.00026 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99984 * 179.97438 * 16 15 13 19 19 N 1.31614 * 119.99952 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00027 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47001 * 60.00179 * 20 18 16 22 22 H 1.48496 * 109.46967 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47515 * 300.00066 * 20 18 16 24 24 C 1.53043 * 109.52656 * 61.37234 * 7 6 5 25 25 C 1.46920 * 120.62895 * 174.57212 * 4 2 1 26 26 H 1.08996 * 109.47161 * 274.66448 * 1 2 3 27 27 H 1.08992 * 109.47304 * 34.66890 * 1 2 3 28 28 H 1.09005 * 109.46964 * 154.66671 * 1 2 3 29 29 H 1.09000 * 109.58585 * 113.84125 * 5 4 2 30 30 H 1.08993 * 109.70468 * 353.47964 * 5 4 2 31 31 H 1.09003 * 109.49483 * 185.41335 * 6 5 4 32 32 H 1.09003 * 109.52438 * 65.33537 * 6 5 4 33 33 H 1.08997 * 109.46333 * 301.35927 * 7 6 5 34 34 H 1.09006 * 110.50551 * 281.37448 * 11 10 8 35 35 H 1.09004 * 110.77444 * 158.50629 * 11 10 8 36 36 H 1.08995 * 110.90762 * 204.85769 * 12 11 10 37 37 H 1.08998 * 110.90462 * 81.25387 * 12 11 10 38 38 H 0.96999 * 119.99930 * 334.99595 * 15 13 8 39 39 H 0.96993 * 119.99954 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.49652 * 58.57763 * 24 7 6 41 41 H 1.08999 * 109.50049 * 178.68004 * 24 7 6 42 42 H 1.08999 * 109.59203 * 246.16233 * 25 4 2 43 43 H 1.09001 * 109.58769 * 6.44257 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4652 -2.4448 0.1210 6 6 2.0690 -3.2404 1.2826 7 6 3.5776 -3.3828 1.0685 8 6 4.1788 -4.2065 2.2091 9 1 3.7143 -5.1922 2.2391 10 8 3.9732 -3.5309 3.4611 11 6 5.1277 -3.8126 4.2844 12 6 6.3128 -3.7355 3.2885 13 6 5.6997 -4.3501 2.0067 14 1 6.0211 -3.7966 1.1243 15 7 6.0700 -5.7626 1.8875 16 6 7.2103 -6.1172 1.2173 17 1 7.8364 -5.3556 0.7763 18 6 7.5615 -7.4554 1.1048 19 7 6.7988 -8.3834 1.6427 20 14 9.1166 -7.9392 0.1899 21 1 10.2924 -7.3138 0.8471 22 1 9.2651 -9.4165 0.2129 23 1 9.0291 -7.4718 -1.2168 24 6 4.2242 -1.9959 1.0455 25 6 3.6451 -1.1863 -0.1191 26 1 -0.3633 0.0836 1.0242 27 1 -0.3633 0.8451 -0.5845 28 1 -0.3633 -0.9289 -0.4397 29 1 1.5710 -3.0115 -0.8040 30 1 0.4094 -2.2575 0.3162 31 1 1.6122 -4.2293 1.3224 32 1 1.8824 -2.7155 2.2195 33 1 3.7638 -3.8861 0.1198 34 1 5.0539 -4.8106 4.7168 35 1 5.2357 -3.0630 5.0684 36 1 7.1558 -4.3302 3.6402 37 1 6.6119 -2.7011 3.1192 38 1 5.5075 -6.4465 2.2833 39 1 7.0443 -9.3184 1.5644 40 1 4.0171 -1.4823 1.9843 41 1 5.3016 -2.0988 0.9164 42 1 3.9287 -1.6504 -1.0637 43 1 4.0279 -0.1663 -0.0837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071024044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:23 Heat of formation + Delta-G solvation = -74.408877 kcal Electronic energy + Delta-G solvation = -23307.576776 eV Core-core repulsion = 19966.682955 eV Total energy + Delta-G solvation = -3340.893821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.35630 -39.22589 -37.02761 -34.38843 -33.39758 -31.66455 -31.50005 -29.68062 -29.22535 -27.63798 -24.73663 -23.45752 -23.01617 -22.22236 -20.45098 -19.84944 -18.86967 -17.37321 -17.05696 -16.02145 -15.69492 -15.53631 -15.43102 -14.95464 -14.40531 -14.03852 -13.96691 -13.39118 -13.32947 -13.32035 -13.03451 -12.88899 -12.66844 -12.22349 -12.01044 -11.98618 -11.44234 -11.18775 -11.14393 -10.94135 -10.82365 -10.73932 -10.48831 -10.36279 -10.24502 -10.02415 -9.76682 -9.69538 -9.18622 -8.97061 -8.67592 -7.06508 -5.85418 -3.15501 2.53918 2.95444 3.38702 3.43760 3.44317 4.30974 4.45474 4.51114 4.68762 4.82470 4.91438 5.00584 5.10555 5.17543 5.27361 5.32155 5.37001 5.48039 5.53619 5.55104 5.63947 5.66101 5.69722 5.76097 5.81053 5.87854 5.98473 6.02932 6.11434 6.20157 6.26478 6.33786 6.45234 6.54244 6.57885 6.66525 6.87631 7.33244 7.36084 7.62997 8.08812 8.32669 9.43762 9.98911 10.33502 11.36776 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024187 B = 0.004060 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.381305 B = 6894.104443 C = 7245.726407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.511 3.489 3 O -0.554 6.554 4 N -0.609 5.609 5 C 0.104 3.896 6 C -0.126 4.126 7 C -0.079 4.079 8 C 0.074 3.926 9 H 0.070 0.930 10 O -0.380 6.380 11 C 0.051 3.949 12 C -0.180 4.180 13 C 0.153 3.847 14 H 0.066 0.934 15 N -0.717 5.717 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.009 4.009 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.126 4.126 25 C 0.109 3.891 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.384 0.616 39 H 0.257 0.743 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.116 11.781 -1.103 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.300 3.700 3 O -0.433 6.433 4 N -0.343 5.343 5 C -0.018 4.018 6 C -0.165 4.165 7 C -0.098 4.098 8 C 0.015 3.985 9 H 0.088 0.912 10 O -0.299 6.299 11 C -0.025 4.025 12 C -0.221 4.221 13 C 0.042 3.958 14 H 0.084 0.916 15 N -0.358 5.358 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.164 4.164 25 C -0.013 4.013 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.218 0.782 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.829 12.417 -1.167 17.189 hybrid contribution 0.931 -0.935 -0.277 1.348 sum -10.897 11.482 -1.444 15.896 Atomic orbital electron populations 1.21960 0.92155 1.04577 1.04816 1.20776 0.90560 0.83132 0.75492 1.90693 1.70752 1.31195 1.50653 1.48196 1.07699 1.06161 1.72273 1.21864 0.96402 0.84178 0.99385 1.21914 0.95767 1.00375 0.98396 1.21247 0.94359 0.95830 0.98325 1.23113 0.96798 0.94783 0.83788 0.91240 1.88798 1.41846 1.73234 1.26020 1.23454 0.85145 1.00082 0.93870 1.23839 0.98899 1.00683 0.98674 1.21589 0.90595 0.87914 0.95742 0.91615 1.42456 1.27770 1.00093 1.65471 1.19185 0.99772 0.91483 1.27131 0.91132 1.24746 0.98959 0.95742 1.01129 1.69644 1.38920 0.99991 1.49357 0.86271 0.83016 0.77276 0.79631 1.21209 1.21651 1.21169 1.21934 1.00441 0.95275 0.98731 1.21668 0.78982 1.02065 0.98572 0.88899 0.89084 0.89976 0.91203 0.89596 0.90618 0.90742 0.89861 0.92553 0.90353 0.89839 0.92151 0.78187 0.93336 0.90813 0.90318 0.91526 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 9.48 36.01 0.34 -1.02 16 2 C 0.51 6.33 7.80 -10.98 -0.09 6.25 16 3 O -0.55 -9.18 16.52 5.56 0.09 -9.09 16 4 N -0.61 -7.06 2.97 -172.77 -0.51 -7.57 16 5 C 0.10 0.97 6.15 -3.71 -0.02 0.94 16 6 C -0.13 -1.43 5.22 -26.61 -0.14 -1.57 16 7 C -0.08 -1.07 1.94 -90.58 -0.18 -1.25 16 8 C 0.07 1.21 2.93 -26.16 -0.08 1.14 16 9 H 0.07 1.25 7.64 -51.93 -0.40 0.85 16 10 O -0.38 -6.25 9.97 -35.23 -0.35 -6.60 16 11 C 0.05 0.81 7.72 38.21 0.29 1.11 16 12 C -0.18 -3.13 6.88 -24.72 -0.17 -3.30 16 13 C 0.15 2.89 2.82 -66.40 -0.19 2.71 16 14 H 0.07 1.25 6.18 -51.92 -0.32 0.93 16 15 N -0.72 -17.10 5.12 -51.94 -0.27 -17.37 16 16 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -27.24 13.06 55.49 0.72 -26.51 16 20 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.13 -1.67 4.94 -26.61 -0.13 -1.80 16 25 C 0.11 1.36 6.44 -3.71 -0.02 1.33 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.46 6.20 -51.93 -0.32 0.14 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.59 5.63 -51.93 -0.29 0.29 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.93 7.79 -51.93 -0.40 0.53 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.61 8.06 -51.93 -0.42 1.19 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.38 9.82 7.54 -40.82 -0.31 9.51 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.07 1.08 7.70 -51.93 -0.40 0.68 16 41 H 0.08 1.07 6.36 -51.93 -0.33 0.74 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 LS Contribution 335.78 15.07 5.06 5.06 Total: -1.00 -31.45 335.78 -7.81 -39.26 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.91 Total: 8.56 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.62 Total: -2.47 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.06 Total: -51.45 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.26 Total: -15.69 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.45 -7.81 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071024044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.154 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds