Wall clock time and date at job start Tue Mar 31 2020 05:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42892 * 114.00154 * 2 1 4 4 C 1.53779 * 113.61763 * 210.00278 * 3 2 1 5 5 C 1.53782 * 87.08126 * 220.01702 * 4 3 2 6 6 C 1.50707 * 113.61051 * 139.98301 * 5 4 3 7 7 O 1.21281 * 120.00355 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99661 * 180.02562 * 6 5 4 9 9 C 1.47019 * 125.64739 * 179.97438 * 8 6 5 10 10 C 1.54323 * 107.27122 * 178.97121 * 9 8 6 11 11 H 1.09001 * 110.87113 * 96.24585 * 10 9 8 12 12 C 1.53003 * 110.72197 * 219.44698 * 10 9 8 13 13 C 1.55160 * 102.94320 * 337.81249 * 10 9 8 14 14 H 1.09000 * 111.00083 * 277.38607 * 13 10 9 15 15 N 1.46496 * 111.00210 * 153.57491 * 13 10 9 16 16 C 1.36945 * 119.99718 * 158.17922 * 15 13 10 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.47468 * 125.62752 * 359.97438 * 8 6 5 25 25 C 1.53777 * 87.08111 * 25.43032 * 5 4 3 26 26 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47211 * 299.99720 * 1 2 3 28 28 H 1.08996 * 109.47428 * 59.99663 * 1 2 3 29 29 H 1.09005 * 112.90952 * 341.25481 * 3 2 1 30 30 H 1.09004 * 113.61419 * 105.46799 * 4 3 2 31 31 H 1.08998 * 113.68843 * 334.57697 * 4 3 2 32 32 H 1.08995 * 113.61483 * 270.79318 * 5 4 3 33 33 H 1.09010 * 109.87829 * 59.55699 * 9 8 6 34 34 H 1.08993 * 109.88672 * 298.39526 * 9 8 6 35 35 H 1.08994 * 109.47322 * 173.52692 * 12 10 9 36 36 H 1.09001 * 109.46609 * 293.52651 * 12 10 9 37 37 H 1.08998 * 109.47113 * 53.52196 * 12 10 9 38 38 H 0.96996 * 120.00499 * 338.17652 * 15 13 10 39 39 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 40 40 H 1.08996 * 110.35201 * 85.25932 * 24 8 6 41 41 H 1.09004 * 110.40259 * 322.91349 * 24 8 6 42 42 H 1.09008 * 113.61307 * 89.11404 * 25 5 4 43 43 H 1.09000 * 113.61468 * 220.01750 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3755 1.3719 -0.7046 5 6 3.8226 2.3181 0.4222 6 6 5.2328 2.0717 0.8933 7 8 5.8964 1.1919 0.3869 8 7 5.7562 2.8285 1.8782 9 6 7.1117 2.6964 2.4319 10 6 7.2729 3.7854 3.5134 11 1 7.0683 3.3814 4.5049 12 6 8.6735 4.3988 3.4595 13 6 6.1993 4.8324 3.1151 14 1 6.5715 5.4959 2.3345 15 7 5.7536 5.5975 4.2822 16 6 5.1751 6.8274 4.1144 17 1 5.0478 7.2333 3.1218 18 6 4.7523 7.5521 5.2202 19 7 4.9078 7.0575 6.4300 20 14 3.9637 9.2300 4.9914 21 1 5.0149 10.2786 5.0168 22 1 3.2556 9.2704 3.6867 23 1 2.9938 9.4749 6.0889 24 6 5.0635 3.9260 2.5785 25 6 2.7534 1.6488 1.3017 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.3142 2.0798 -0.3227 30 1 3.3383 1.8471 -1.6848 31 1 3.9097 0.4219 -0.7147 32 1 3.6235 3.3694 0.2143 33 1 7.8501 2.8445 1.6438 34 1 7.2354 1.7097 2.8780 35 1 8.7287 5.2399 4.1505 36 1 9.4104 3.6471 3.7425 37 1 8.8793 4.7462 2.4471 38 1 5.8682 5.2331 5.1737 39 1 4.6127 7.5642 7.2027 40 1 4.4694 3.5337 3.4038 41 1 4.4315 4.4804 1.8847 42 1 3.1167 0.7739 1.8410 43 1 2.2140 2.3476 1.9412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082580669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:30 Heat of formation + Delta-G solvation = -48.957013 kcal Electronic energy + Delta-G solvation = -22686.349416 eV Core-core repulsion = 19346.559271 eV Total energy + Delta-G solvation = -3339.790145 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44370 -38.89200 -37.45842 -35.75706 -34.09454 -32.47293 -30.75590 -27.79401 -27.50245 -26.58782 -25.80476 -24.71914 -23.90275 -21.62290 -20.35337 -19.87050 -18.81020 -17.41341 -17.22518 -16.29517 -16.07685 -15.68983 -15.29785 -15.06883 -14.52946 -14.08859 -13.91101 -13.58258 -13.12825 -13.01576 -12.76385 -12.72277 -12.53145 -12.24767 -12.02927 -11.76510 -11.66484 -11.26516 -11.14321 -11.03962 -10.97300 -10.81083 -10.72781 -10.63421 -10.27822 -9.96888 -9.82202 -9.67645 -9.49810 -9.05187 -8.33025 -7.12853 -5.89511 -3.20407 2.80753 3.18353 3.35798 3.41553 3.42988 3.70996 4.36845 4.45470 4.48813 4.66820 4.68775 4.79375 5.06350 5.11368 5.16883 5.19372 5.21054 5.28988 5.44868 5.51908 5.62498 5.62831 5.71118 5.75808 5.81493 5.87401 5.92064 5.95929 6.00457 6.13908 6.20897 6.23338 6.35685 6.44901 6.54581 6.61729 6.84695 7.07421 7.58783 7.81406 8.27714 8.39470 9.40041 9.93751 10.28785 11.32373 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.004418 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.365159 B = 6335.880129 C = 7790.373165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.061 3.939 4 C -0.113 4.113 5 C -0.132 4.132 6 C 0.538 3.462 7 O -0.553 6.553 8 N -0.611 5.611 9 C 0.116 3.884 10 C -0.114 4.114 11 H 0.084 0.916 12 C -0.134 4.134 13 C 0.177 3.823 14 H 0.066 0.934 15 N -0.710 5.710 16 C -0.249 4.249 17 H 0.072 0.928 18 C -0.007 4.007 19 N -0.929 5.929 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.291 1.291 24 C 0.074 3.926 25 C -0.136 4.136 26 H 0.083 0.917 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.387 0.613 39 H 0.257 0.743 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.831 -9.806 -10.751 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.003 3.997 4 C -0.150 4.150 5 C -0.153 4.153 6 C 0.327 3.673 7 O -0.432 6.432 8 N -0.344 5.344 9 C -0.007 4.007 10 C -0.134 4.134 11 H 0.102 0.898 12 C -0.192 4.192 13 C 0.064 3.936 14 H 0.084 0.916 15 N -0.350 5.350 16 C -0.380 4.380 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.576 5.576 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.217 1.217 24 C -0.052 4.052 25 C -0.174 4.174 26 H 0.102 0.898 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.222 0.778 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.476 -10.290 -11.094 15.525 hybrid contribution -0.746 1.165 0.371 1.433 sum -4.223 -9.125 -10.722 14.699 Atomic orbital electron populations 1.22792 0.81357 1.02653 0.99970 1.87967 1.19501 1.27375 1.94549 1.23718 0.94007 0.85251 0.96690 1.23117 0.94351 1.00666 0.96907 1.22425 0.92291 1.01395 0.99227 1.19938 0.88042 0.80755 0.78587 1.90656 1.62244 1.32987 1.57281 1.48539 1.15342 1.34615 1.35898 1.21970 0.83882 0.98924 0.95930 1.22499 0.96915 0.95624 0.98365 0.89795 1.21664 0.94669 1.00799 1.02038 1.21368 0.90147 0.90628 0.91450 0.91565 1.42297 1.71558 1.18233 1.02908 1.19234 1.32089 0.93697 0.92942 0.91004 1.24754 1.01570 0.98835 0.95205 1.69659 1.52300 1.38454 0.97198 0.86202 0.78839 0.84159 0.77020 1.21592 1.20679 1.21714 1.23510 0.98122 0.87490 0.96085 1.23396 0.95859 1.00980 0.97146 0.89810 0.93925 0.94070 0.89124 0.90578 0.87788 0.86714 0.91691 0.92092 0.91341 0.93210 0.92919 0.77846 0.93316 0.91210 0.91313 0.88862 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.34 16 2 O -0.38 -4.48 10.71 -35.23 -0.38 -4.86 16 3 C 0.06 0.67 4.31 -25.92 -0.11 0.56 16 4 C -0.11 -1.35 7.24 -25.92 -0.19 -1.53 16 5 C -0.13 -1.69 3.31 -90.96 -0.30 -1.99 16 6 C 0.54 8.70 7.38 -10.98 -0.08 8.62 16 7 O -0.55 -10.54 16.23 5.56 0.09 -10.45 16 8 N -0.61 -9.73 3.33 -170.48 -0.57 -10.30 16 9 C 0.12 1.76 6.46 -3.07 -0.02 1.74 16 10 C -0.11 -1.78 3.19 -88.78 -0.28 -2.06 16 11 H 0.08 1.35 7.99 -51.93 -0.42 0.93 16 12 C -0.13 -1.90 9.16 37.16 0.34 -1.56 16 13 C 0.18 3.22 3.14 -65.78 -0.21 3.01 16 14 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 15 N -0.71 -16.23 5.26 -51.35 -0.27 -16.50 16 16 C -0.25 -6.38 9.97 -15.06 -0.15 -6.53 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 19 N -0.93 -26.53 13.06 55.49 0.72 -25.81 16 20 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.07 1.22 6.39 -2.51 -0.02 1.21 16 25 C -0.14 -1.63 7.46 -25.92 -0.19 -1.83 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.80 7.87 -51.93 -0.41 0.39 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.46 7.43 -51.93 -0.39 1.08 16 32 H 0.11 1.31 7.47 -51.93 -0.39 0.92 16 33 H 0.06 0.97 7.77 -51.92 -0.40 0.57 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 38 H 0.39 9.49 7.73 -40.82 -0.32 9.18 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.07 1.09 7.24 -51.93 -0.38 0.71 16 42 H 0.09 1.25 8.09 -51.92 -0.42 0.83 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -30.14 350.91 -7.64 -37.78 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.30 Total: 7.98 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.21 Total: 0.69 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.11 Total: -52.61 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.29 Total: -15.31 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.14 -7.64 -37.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082580669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.175 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds