Wall clock time and date at job start Tue Mar 31 2020 05:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42892 * 114.00154 * 2 1 4 4 C 1.53779 * 113.61763 * 210.00278 * 3 2 1 5 5 C 1.53782 * 87.08126 * 220.01702 * 4 3 2 6 6 C 1.50707 * 113.61051 * 139.98301 * 5 4 3 7 7 O 1.21281 * 120.00355 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99661 * 180.02562 * 6 5 4 9 9 C 1.47019 * 125.64739 * 179.97438 * 8 6 5 10 10 C 1.54323 * 107.27122 * 178.97121 * 9 8 6 11 11 H 1.09001 * 110.87113 * 96.24585 * 10 9 8 12 12 C 1.53003 * 110.72197 * 219.44698 * 10 9 8 13 13 C 1.55160 * 102.94320 * 337.81249 * 10 9 8 14 14 H 1.09000 * 111.00083 * 277.38607 * 13 10 9 15 15 N 1.46496 * 111.00210 * 153.57491 * 13 10 9 16 16 C 1.36945 * 119.99718 * 158.17922 * 15 13 10 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 13 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.47468 * 125.62752 * 359.97438 * 8 6 5 25 25 C 1.53777 * 87.08111 * 25.43032 * 5 4 3 26 26 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47211 * 299.99720 * 1 2 3 28 28 H 1.08996 * 109.47428 * 59.99663 * 1 2 3 29 29 H 1.09005 * 112.90952 * 341.25481 * 3 2 1 30 30 H 1.09004 * 113.61419 * 105.46799 * 4 3 2 31 31 H 1.08998 * 113.68843 * 334.57697 * 4 3 2 32 32 H 1.08995 * 113.61483 * 270.79318 * 5 4 3 33 33 H 1.09010 * 109.87829 * 59.55699 * 9 8 6 34 34 H 1.08993 * 109.88672 * 298.39526 * 9 8 6 35 35 H 1.08994 * 109.47322 * 173.52692 * 12 10 9 36 36 H 1.09001 * 109.46609 * 293.52651 * 12 10 9 37 37 H 1.08998 * 109.47113 * 53.52196 * 12 10 9 38 38 H 0.96996 * 120.00499 * 338.17652 * 15 13 10 39 39 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 40 40 H 1.08996 * 110.35201 * 85.25932 * 24 8 6 41 41 H 1.09004 * 110.40259 * 322.91349 * 24 8 6 42 42 H 1.09008 * 113.61307 * 89.11404 * 25 5 4 43 43 H 1.09000 * 113.61468 * 220.01750 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3755 1.3719 -0.7046 5 6 3.8226 2.3181 0.4222 6 6 5.2328 2.0717 0.8933 7 8 5.8964 1.1919 0.3869 8 7 5.7562 2.8285 1.8782 9 6 7.1117 2.6964 2.4319 10 6 7.2729 3.7854 3.5134 11 1 7.0683 3.3814 4.5049 12 6 8.6735 4.3988 3.4595 13 6 6.1993 4.8324 3.1151 14 1 6.5715 5.4959 2.3345 15 7 5.7536 5.5975 4.2822 16 6 5.1751 6.8274 4.1144 17 1 5.0478 7.2333 3.1218 18 6 4.7523 7.5521 5.2202 19 7 4.9078 7.0575 6.4300 20 14 3.9637 9.2300 4.9914 21 1 5.0149 10.2786 5.0168 22 1 3.2556 9.2704 3.6867 23 1 2.9938 9.4749 6.0889 24 6 5.0635 3.9260 2.5785 25 6 2.7534 1.6488 1.3017 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.3142 2.0798 -0.3227 30 1 3.3383 1.8471 -1.6848 31 1 3.9097 0.4219 -0.7147 32 1 3.6235 3.3694 0.2143 33 1 7.8501 2.8445 1.6438 34 1 7.2354 1.7097 2.8780 35 1 8.7287 5.2399 4.1505 36 1 9.4104 3.6471 3.7425 37 1 8.8793 4.7462 2.4471 38 1 5.8682 5.2331 5.1737 39 1 4.6127 7.5642 7.2027 40 1 4.4694 3.5337 3.4038 41 1 4.4315 4.4804 1.8847 42 1 3.1167 0.7739 1.8410 43 1 2.2140 2.3476 1.9412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082580669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:29 Heat of formation + Delta-G solvation = -68.222929 kcal Electronic energy + Delta-G solvation = -22687.184849 eV Core-core repulsion = 19346.559271 eV Total energy + Delta-G solvation = -3340.625578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60796 -40.01203 -38.72641 -36.72303 -35.84560 -33.90335 -32.49579 -29.14129 -28.72329 -27.47885 -26.74960 -25.98710 -25.50257 -23.03194 -21.50057 -21.18020 -19.95560 -19.09741 -18.53071 -17.45245 -17.33648 -16.78689 -16.35877 -16.21936 -15.94548 -15.35748 -15.22792 -14.99100 -14.54741 -14.46276 -14.21737 -13.93501 -13.51716 -13.28816 -13.15751 -13.02132 -12.88702 -12.82343 -12.70065 -12.23674 -12.17174 -12.08945 -11.99112 -11.86519 -11.70307 -11.68391 -11.38391 -10.97313 -10.80477 -10.43406 -9.68767 -9.02270 -7.92248 -5.21964 1.52150 1.52760 1.54377 1.60790 1.95557 2.58685 2.88930 3.38147 3.39563 3.46741 3.55344 3.74513 3.80220 3.84404 3.96116 4.01555 4.17918 4.30136 4.39815 4.47899 4.55038 4.59222 4.59658 4.67743 4.71386 4.75199 4.87137 4.88373 4.90331 4.94581 5.03865 5.09982 5.13290 5.15014 5.27756 5.36392 5.45778 5.57730 6.28337 6.31619 6.51112 7.10556 7.36497 8.07502 8.32010 9.30606 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.004418 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.365159 B = 6335.880129 C = 7790.373165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.402 6.402 3 C 0.071 3.929 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.534 3.466 7 O -0.585 6.585 8 N -0.611 5.611 9 C 0.117 3.883 10 C -0.104 4.104 11 H 0.077 0.923 12 C -0.129 4.129 13 C 0.171 3.829 14 H 0.065 0.935 15 N -0.720 5.720 16 C -0.240 4.240 17 H 0.080 0.920 18 C -0.067 4.067 19 N -0.967 5.967 20 Si 0.967 3.033 21 H -0.291 1.291 22 H -0.267 1.267 23 H -0.300 1.300 24 C 0.088 3.912 25 C -0.136 4.136 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.376 0.624 39 H 0.250 0.750 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.715 -9.421 -12.396 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.321 6.321 3 C 0.013 3.987 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.324 3.676 7 O -0.466 6.466 8 N -0.343 5.343 9 C -0.006 4.006 10 C -0.124 4.124 11 H 0.096 0.904 12 C -0.186 4.186 13 C 0.060 3.940 14 H 0.083 0.917 15 N -0.359 5.359 16 C -0.372 4.372 17 H 0.098 0.902 18 C -0.260 4.260 19 N -0.617 5.617 20 Si 0.797 3.203 21 H -0.218 1.218 22 H -0.191 1.191 23 H -0.227 1.227 24 C -0.037 4.037 25 C -0.175 4.175 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.209 0.791 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.359 -9.921 -12.789 16.763 hybrid contribution -0.424 0.949 0.833 1.332 sum -4.783 -8.972 -11.956 15.695 Atomic orbital electron populations 1.22997 0.79576 1.03764 1.01041 1.87936 1.21564 1.28026 1.94585 1.23728 0.93971 0.85757 0.95209 1.23081 0.94854 0.99339 0.97830 1.22539 0.90075 1.02785 0.99783 1.20560 0.89117 0.79967 0.77962 1.90640 1.63418 1.34287 1.58284 1.48581 1.15506 1.34398 1.35845 1.21987 0.83922 0.98789 0.95895 1.22404 0.96999 0.94838 0.98146 0.90438 1.21619 0.94261 1.00640 1.02113 1.21512 0.91459 0.91008 0.90022 0.91680 1.42391 1.71696 1.18059 1.03709 1.19611 1.30241 0.94294 0.93053 0.90163 1.25468 1.03248 1.02166 0.95117 1.69806 1.54366 1.39746 0.97774 0.85241 0.77702 0.80316 0.77090 1.21816 1.19119 1.22654 1.23187 0.97241 0.87270 0.96051 1.23378 0.95932 1.00339 0.97807 0.88861 0.93325 0.92442 0.86273 0.88570 0.90444 0.84609 0.90987 0.91834 0.93245 0.91005 0.92032 0.79123 0.94076 0.92186 0.90111 0.90955 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.85 113.37 1.23 1.55 16 2 O -0.40 -8.99 10.71 -148.98 -1.60 -10.59 16 3 C 0.07 1.39 4.31 31.12 0.13 1.53 16 4 C -0.11 -2.53 7.24 31.12 0.23 -2.30 16 5 C -0.13 -3.11 3.31 -11.01 -0.04 -3.15 16 6 C 0.53 16.73 7.38 87.66 0.65 17.37 16 7 O -0.59 -22.13 16.23 -3.03 -0.05 -22.18 16 8 N -0.61 -18.71 3.33 -811.67 -2.70 -21.41 16 9 C 0.12 3.41 6.46 86.73 0.56 3.97 16 10 C -0.10 -3.15 3.19 -9.60 -0.03 -3.18 16 11 H 0.08 2.46 7.99 -2.39 -0.02 2.44 16 12 C -0.13 -3.48 9.16 71.98 0.66 -2.82 16 13 C 0.17 6.04 3.14 46.39 0.15 6.19 16 14 H 0.07 2.35 8.02 -2.39 -0.02 2.33 16 15 N -0.72 -32.68 5.26 -316.38 -1.66 -34.35 16 16 C -0.24 -12.14 9.97 84.03 0.84 -11.30 16 17 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 18 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 19 N -0.97 -55.93 13.06 21.65 0.28 -55.64 16 20 Si 0.97 43.34 29.55 68.60 2.03 45.37 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 24 C 0.09 2.79 6.39 86.85 0.55 3.35 16 25 C -0.14 -3.09 7.46 31.12 0.23 -2.86 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 0.64 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.12 1.67 7.87 -2.38 -0.02 1.65 16 30 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.08 2.17 7.43 -2.39 -0.02 2.15 16 32 H 0.14 2.67 7.47 -2.39 -0.02 2.65 16 33 H 0.07 2.02 7.77 -2.38 -0.02 2.01 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.54 8.06 -2.39 -0.02 1.52 16 38 H 0.38 18.66 7.73 -92.71 -0.72 17.94 16 39 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.08 2.37 7.24 -2.39 -0.02 2.36 16 42 H 0.07 1.94 8.09 -2.38 -0.02 1.92 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -64.45 350.91 2.19 -62.25 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.27 Total: 31.33 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.63 Total: 5.22 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -4.08 Total: -111.40 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -1.65 Total: -32.77 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -64.45 2.19 -62.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082580669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.969 kcal (2) G-P(sol) polarization free energy of solvation -64.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds