Wall clock time and date at job start Tue Mar 31 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 114.00175 * 2 1 4 4 H 1.09004 * 109.46352 * 329.99829 * 3 2 1 5 5 C 1.52992 * 109.46944 * 89.99510 * 3 2 1 6 6 C 1.50698 * 109.47054 * 210.00235 * 3 2 1 7 7 O 1.21282 * 120.00280 * 351.97602 * 6 3 2 8 8 N 1.34776 * 119.99816 * 171.98756 * 6 3 2 9 9 C 1.47156 * 121.21986 * 355.59529 * 8 6 3 10 10 C 1.52831 * 107.97910 * 122.68229 * 9 8 6 11 11 C 1.53087 * 110.58600 * 57.34288 * 10 9 8 12 12 H 1.08993 * 112.49517 * 70.57317 * 11 10 9 13 13 C 1.56487 * 106.41813 * 195.41781 * 11 10 9 14 14 C 1.54502 * 102.40179 * 78.36429 * 13 11 10 15 15 N 1.47426 * 107.30101 * 22.90948 * 14 13 11 16 16 C 1.36935 * 126.06015 * 181.52278 * 15 14 13 17 17 H 1.08000 * 120.00115 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00254 * 0.02562 * 16 15 14 19 19 N 1.31624 * 119.99590 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00433 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47191 * 90.00123 * 20 18 16 22 22 H 1.48504 * 109.47264 * 210.00131 * 20 18 16 23 23 H 1.48501 * 109.47151 * 330.00089 * 20 18 16 24 24 C 1.46471 * 107.88265 * 1.51764 * 15 14 13 25 25 H 1.08993 * 108.42649 * 89.26108 * 24 15 14 26 26 C 1.46754 * 121.22154 * 175.57469 * 8 6 3 27 27 H 1.09009 * 109.47326 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47631 * 299.99930 * 1 2 3 29 29 H 1.09003 * 109.47497 * 60.00379 * 1 2 3 30 30 H 1.09003 * 109.47441 * 66.34455 * 5 3 2 31 31 H 1.09005 * 109.46993 * 186.33588 * 5 3 2 32 32 H 1.08995 * 109.47746 * 306.33788 * 5 3 2 33 33 H 1.09001 * 109.76109 * 242.29921 * 9 8 6 34 34 H 1.08999 * 109.76250 * 3.05710 * 9 8 6 35 35 H 1.09004 * 109.25478 * 177.62790 * 10 9 8 36 36 H 1.09002 * 109.25505 * 297.09265 * 10 9 8 37 37 H 1.08996 * 110.91194 * 320.13582 * 13 11 10 38 38 H 1.09008 * 110.84544 * 196.56166 * 13 11 10 39 39 H 1.08999 * 109.90351 * 263.43269 * 14 13 11 40 40 H 1.09004 * 109.89986 * 142.37810 * 14 13 11 41 41 H 0.97001 * 119.99856 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.22637 * 112.24171 * 26 8 6 43 43 H 1.09000 * 109.19462 * 352.86291 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2175 1.7714 1.4424 6 6 3.3386 1.2639 -0.7105 7 8 3.8155 0.1994 -1.0427 8 7 3.9967 2.4096 -0.9764 9 6 3.4005 3.7200 -0.6719 10 6 4.3533 4.4665 0.2611 11 6 5.7362 4.6055 -0.3807 12 1 5.7396 5.3045 -1.2169 13 6 6.7195 5.0048 0.7694 14 6 6.9653 3.6548 1.4795 15 7 6.6723 2.5875 0.5057 16 6 6.7370 1.2403 0.7425 17 1 6.5009 0.5414 -0.0462 18 6 7.1061 0.7730 1.9964 19 7 7.3934 1.6248 2.9578 20 14 7.1951 -1.0647 2.3194 21 1 8.5612 -1.5565 2.0080 22 1 6.8863 -1.3320 3.7472 23 1 6.2084 -1.7667 1.4598 24 6 6.2997 3.2233 -0.7601 25 1 7.2051 3.3809 -1.3461 26 6 5.3344 2.3960 -1.5798 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 2.9686 1.1440 1.9226 31 1 2.5549 2.8079 1.4445 32 1 1.2771 1.6943 1.9880 33 1 3.2671 4.2872 -1.5931 34 1 2.4372 3.5815 -0.1810 35 1 3.9512 5.4586 0.4668 36 1 4.4457 3.9152 1.1968 37 1 6.2545 5.7198 1.4480 38 1 7.6494 5.4035 0.3637 39 1 6.3039 3.5629 2.3410 40 1 8.0047 3.5887 1.8011 41 1 7.6517 1.2982 3.8339 42 1 5.2774 2.8054 -2.5884 43 1 5.6947 1.3684 -1.6295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084899598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:24 Heat of formation + Delta-G solvation = -41.917373 kcal Electronic energy + Delta-G solvation = -24712.253904 eV Core-core repulsion = 21372.769021 eV Total energy + Delta-G solvation = -3339.484883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.14042 -38.47755 -37.06516 -35.00560 -32.78796 -31.85766 -30.80460 -28.92386 -28.33446 -26.73871 -24.84698 -24.38279 -22.77708 -22.50868 -20.01383 -19.74360 -18.16545 -17.19390 -16.65063 -16.31283 -15.34252 -15.19686 -14.85018 -14.53920 -14.41066 -13.99213 -13.88107 -13.46516 -12.98574 -12.84366 -12.73164 -12.19273 -12.09943 -11.91438 -11.67912 -11.54862 -11.32956 -11.19190 -10.99704 -10.88731 -10.74490 -10.64994 -10.05811 -9.84445 -9.83933 -9.75389 -9.60983 -9.46632 -8.99038 -8.49091 -8.08258 -6.72976 -5.60701 -2.92468 3.05852 3.25633 3.51177 3.56636 3.66347 4.08928 4.62669 4.77791 4.90783 5.06769 5.11637 5.17455 5.30255 5.33739 5.39614 5.51594 5.53079 5.62647 5.70523 5.72105 5.78657 5.80218 5.85241 5.99669 6.05703 6.14672 6.27721 6.31534 6.42936 6.47137 6.52110 6.63871 6.75877 6.94920 7.04647 7.23735 7.64495 7.67306 7.92110 7.94972 8.33871 8.74689 9.33286 9.93960 10.57984 11.51397 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.009079 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.335851 B = 3083.384623 C = 4357.825627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.075 3.925 4 H 0.076 0.924 5 C -0.171 4.171 6 C 0.524 3.476 7 O -0.517 6.517 8 N -0.594 5.594 9 C 0.105 3.895 10 C -0.125 4.125 11 C -0.101 4.101 12 H 0.075 0.925 13 C -0.143 4.143 14 C 0.178 3.822 15 N -0.587 5.587 16 C -0.213 4.213 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.926 5.926 20 Si 0.900 3.100 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.276 1.276 24 C 0.153 3.847 25 H 0.027 0.973 26 C 0.116 3.884 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.249 0.751 42 H 0.054 0.946 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.316 8.187 -6.200 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.013 3.987 4 H 0.094 0.906 5 C -0.229 4.229 6 C 0.310 3.690 7 O -0.392 6.392 8 N -0.328 5.328 9 C -0.018 4.018 10 C -0.163 4.163 11 C -0.121 4.121 12 H 0.093 0.907 13 C -0.181 4.181 14 C 0.053 3.947 15 N -0.313 5.313 16 C -0.341 4.341 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.574 5.574 20 Si 0.731 3.269 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.201 1.201 24 C 0.045 3.955 25 H 0.044 0.956 26 C -0.007 4.007 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.897 7.238 -6.185 15.237 hybrid contribution -0.101 -0.592 0.427 0.737 sum -11.998 6.646 -5.757 14.875 Atomic orbital electron populations 1.22835 0.81348 1.02886 0.99654 1.88087 1.18998 1.25660 1.94931 1.21923 0.93713 0.85955 0.97077 0.90620 1.22292 1.03099 1.02860 0.94648 1.20036 0.86064 0.83832 0.79059 1.90692 1.67903 1.29156 1.51404 1.47713 1.17716 1.04934 1.62476 1.21772 0.96626 0.84367 0.99010 1.21870 0.94802 0.99473 1.00154 1.22446 0.94715 0.97469 0.97483 0.90662 1.23233 0.97830 0.99765 0.97318 1.21208 0.99799 0.82574 0.91080 1.44264 1.78855 1.01915 1.06239 1.19033 1.38329 0.80552 0.96166 0.90150 1.24681 1.02085 0.97402 0.96100 1.69961 1.53126 1.31632 1.02701 0.86243 0.77857 0.85634 0.77142 1.21820 1.21911 1.20116 1.20710 0.94150 0.90747 0.89925 0.95625 1.21382 0.81609 1.03528 0.94194 0.89433 0.94028 0.94222 0.90290 0.90481 0.91924 0.91732 0.90435 0.92050 0.89900 0.92297 0.92737 0.93726 0.94150 0.94101 0.92768 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.43 16 2 O -0.36 -6.18 9.89 -55.01 -0.54 -6.73 16 3 C 0.07 1.19 2.29 -27.89 -0.06 1.12 16 4 H 0.08 0.92 6.93 -51.93 -0.36 0.57 16 5 C -0.17 -2.62 9.18 37.15 0.34 -2.28 16 6 C 0.52 10.43 7.07 -10.99 -0.08 10.35 16 7 O -0.52 -12.77 15.99 -14.22 -0.23 -13.00 16 8 N -0.59 -10.45 2.97 -174.09 -0.52 -10.97 16 9 C 0.11 1.40 5.59 -3.77 -0.02 1.38 16 10 C -0.12 -1.82 4.82 -26.77 -0.13 -1.95 16 11 C -0.10 -1.62 3.68 -88.17 -0.32 -1.94 16 12 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 13 C -0.14 -2.52 6.36 -24.07 -0.15 -2.68 16 14 C 0.18 4.18 4.60 -2.75 -0.01 4.17 16 15 N -0.59 -14.42 3.20 -164.42 -0.53 -14.94 16 16 C -0.21 -5.98 9.70 -15.06 -0.15 -6.13 16 17 H 0.08 2.35 6.51 -52.49 -0.34 2.01 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 19 N -0.93 -27.47 10.38 55.49 0.58 -26.90 16 20 Si 0.90 23.77 29.55 -169.99 -5.02 18.74 16 21 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 22 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 23 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 24 C 0.15 3.02 2.97 -68.29 -0.20 2.82 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 C 0.12 2.18 5.67 -4.78 -0.03 2.15 16 27 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 28 H 0.04 0.40 7.77 -51.93 -0.40 0.00 16 29 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.08 1.09 5.20 -51.93 -0.27 0.82 16 32 H 0.06 0.78 7.76 -51.93 -0.40 0.38 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.87 4.61 -51.93 -0.24 0.63 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.51 6.28 -51.93 -0.33 1.19 16 37 H 0.06 0.93 7.98 -51.93 -0.41 0.52 16 38 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 39 H 0.04 1.16 7.04 -51.93 -0.37 0.80 16 40 H 0.04 1.07 7.56 -51.93 -0.39 0.68 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 2.12 5.56 -51.93 -0.29 1.83 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -34.34 326.28 -7.91 -42.25 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.74 Total: -1.51 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 0.18 Total: 8.13 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.47 Total: -52.81 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.77 Total: -19.72 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.02 Total: 18.74 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.34 -7.91 -42.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084899598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.331 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds