Wall clock time and date at job start Tue Mar 31 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 114.00175 * 2 1 4 4 H 1.09004 * 109.46352 * 329.99829 * 3 2 1 5 5 C 1.52992 * 109.46944 * 89.99510 * 3 2 1 6 6 C 1.50698 * 109.47054 * 210.00235 * 3 2 1 7 7 O 1.21282 * 120.00280 * 351.97602 * 6 3 2 8 8 N 1.34776 * 119.99816 * 171.98756 * 6 3 2 9 9 C 1.47156 * 121.21986 * 355.59529 * 8 6 3 10 10 C 1.52831 * 107.97910 * 122.68229 * 9 8 6 11 11 C 1.53087 * 110.58600 * 57.34288 * 10 9 8 12 12 H 1.08993 * 112.49517 * 70.57317 * 11 10 9 13 13 C 1.56487 * 106.41813 * 195.41781 * 11 10 9 14 14 C 1.54502 * 102.40179 * 78.36429 * 13 11 10 15 15 N 1.47426 * 107.30101 * 22.90948 * 14 13 11 16 16 C 1.36935 * 126.06015 * 181.52278 * 15 14 13 17 17 H 1.08000 * 120.00115 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00254 * 0.02562 * 16 15 14 19 19 N 1.31624 * 119.99590 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00433 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47191 * 90.00123 * 20 18 16 22 22 H 1.48504 * 109.47264 * 210.00131 * 20 18 16 23 23 H 1.48501 * 109.47151 * 330.00089 * 20 18 16 24 24 C 1.46471 * 107.88265 * 1.51764 * 15 14 13 25 25 H 1.08993 * 108.42649 * 89.26108 * 24 15 14 26 26 C 1.46754 * 121.22154 * 175.57469 * 8 6 3 27 27 H 1.09009 * 109.47326 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47631 * 299.99930 * 1 2 3 29 29 H 1.09003 * 109.47497 * 60.00379 * 1 2 3 30 30 H 1.09003 * 109.47441 * 66.34455 * 5 3 2 31 31 H 1.09005 * 109.46993 * 186.33588 * 5 3 2 32 32 H 1.08995 * 109.47746 * 306.33788 * 5 3 2 33 33 H 1.09001 * 109.76109 * 242.29921 * 9 8 6 34 34 H 1.08999 * 109.76250 * 3.05710 * 9 8 6 35 35 H 1.09004 * 109.25478 * 177.62790 * 10 9 8 36 36 H 1.09002 * 109.25505 * 297.09265 * 10 9 8 37 37 H 1.08996 * 110.91194 * 320.13582 * 13 11 10 38 38 H 1.09008 * 110.84544 * 196.56166 * 13 11 10 39 39 H 1.08999 * 109.90351 * 263.43269 * 14 13 11 40 40 H 1.09004 * 109.89986 * 142.37810 * 14 13 11 41 41 H 0.97001 * 119.99856 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.22637 * 112.24171 * 26 8 6 43 43 H 1.09000 * 109.19462 * 352.86291 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2175 1.7714 1.4424 6 6 3.3386 1.2639 -0.7105 7 8 3.8155 0.1994 -1.0427 8 7 3.9967 2.4096 -0.9764 9 6 3.4005 3.7200 -0.6719 10 6 4.3533 4.4665 0.2611 11 6 5.7362 4.6055 -0.3807 12 1 5.7396 5.3045 -1.2169 13 6 6.7195 5.0048 0.7694 14 6 6.9653 3.6548 1.4795 15 7 6.6723 2.5875 0.5057 16 6 6.7370 1.2403 0.7425 17 1 6.5009 0.5414 -0.0462 18 6 7.1061 0.7730 1.9964 19 7 7.3934 1.6248 2.9578 20 14 7.1951 -1.0647 2.3194 21 1 8.5612 -1.5565 2.0080 22 1 6.8863 -1.3320 3.7472 23 1 6.2084 -1.7667 1.4598 24 6 6.2997 3.2233 -0.7601 25 1 7.2051 3.3809 -1.3461 26 6 5.3344 2.3960 -1.5798 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 2.9686 1.1440 1.9226 31 1 2.5549 2.8079 1.4445 32 1 1.2771 1.6943 1.9880 33 1 3.2671 4.2872 -1.5931 34 1 2.4372 3.5815 -0.1810 35 1 3.9512 5.4586 0.4668 36 1 4.4457 3.9152 1.1968 37 1 6.2545 5.7198 1.4480 38 1 7.6494 5.4035 0.3637 39 1 6.3039 3.5629 2.3410 40 1 8.0047 3.5887 1.8011 41 1 7.6517 1.2982 3.8339 42 1 5.2774 2.8054 -2.5884 43 1 5.6947 1.3684 -1.6295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084899598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:23 Heat of formation + Delta-G solvation = -66.184424 kcal Electronic energy + Delta-G solvation = -24713.306203 eV Core-core repulsion = 21372.769021 eV Total energy + Delta-G solvation = -3340.537182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55457 -39.91682 -38.41112 -36.59077 -34.65899 -33.24839 -32.38631 -30.44837 -30.02218 -27.70441 -26.52309 -26.08698 -24.12448 -23.84885 -21.72703 -21.22532 -19.63262 -18.49368 -18.44106 -17.72910 -16.91186 -16.60276 -16.40282 -16.02949 -15.79035 -15.70584 -15.32546 -14.87282 -14.40102 -14.26399 -14.02587 -13.86619 -13.42006 -13.37696 -13.14172 -12.97229 -12.96016 -12.78751 -12.64096 -12.46771 -12.29204 -12.10646 -12.06927 -11.66452 -11.38196 -11.25122 -11.13390 -10.87336 -10.67087 -10.41402 -9.48941 -8.79223 -7.85097 -5.13751 1.32721 1.34473 1.47114 1.63122 1.96088 2.46354 2.98029 3.33358 3.47719 3.64651 3.80533 3.88886 3.96112 4.02534 4.14412 4.31298 4.43667 4.47917 4.51966 4.54846 4.58599 4.63105 4.68914 4.73442 4.78026 4.83366 4.87594 4.92794 5.04307 5.16187 5.18321 5.23166 5.34837 5.53249 5.68141 5.70906 5.75828 5.84334 6.13260 6.23890 6.57500 7.15844 7.30435 7.83974 8.46224 9.25056 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.009079 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.335851 B = 3083.384623 C = 4357.825627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.404 6.404 3 C 0.081 3.919 4 H 0.126 0.874 5 C -0.163 4.163 6 C 0.506 3.494 7 O -0.585 6.585 8 N -0.592 5.592 9 C 0.100 3.900 10 C -0.123 4.123 11 C -0.083 4.083 12 H 0.124 0.876 13 C -0.128 4.128 14 C 0.185 3.815 15 N -0.603 5.603 16 C -0.201 4.201 17 H 0.060 0.940 18 C -0.060 4.060 19 N -0.945 5.945 20 Si 0.947 3.053 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.293 1.293 24 C 0.140 3.860 25 H 0.025 0.975 26 C 0.118 3.882 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.023 0.977 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.010 0.990 40 H -0.004 1.004 41 H 0.243 0.757 42 H 0.095 0.905 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.949 11.580 -7.685 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.322 6.322 3 C 0.020 3.980 4 H 0.143 0.857 5 C -0.220 4.220 6 C 0.294 3.706 7 O -0.464 6.464 8 N -0.325 5.325 9 C -0.021 4.021 10 C -0.161 4.161 11 C -0.103 4.103 12 H 0.142 0.858 13 C -0.166 4.166 14 C 0.060 3.940 15 N -0.328 5.328 16 C -0.331 4.331 17 H 0.078 0.922 18 C -0.253 4.253 19 N -0.595 5.595 20 Si 0.778 3.222 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.219 1.219 24 C 0.033 3.967 25 H 0.043 0.957 26 C -0.006 4.006 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.028 0.972 40 H 0.014 0.986 41 H 0.052 0.948 42 H 0.113 0.887 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.547 10.696 -7.690 19.626 hybrid contribution 0.707 -1.640 0.815 1.963 sum -13.840 9.056 -6.875 17.912 Atomic orbital electron populations 1.23125 0.78452 1.04159 1.01721 1.88047 1.22292 1.26749 1.95158 1.21967 0.92321 0.86773 0.96901 0.85660 1.22239 1.03039 1.02287 0.94435 1.21012 0.87588 0.83475 0.78497 1.90650 1.69862 1.31680 1.54232 1.47907 1.16951 1.06373 1.61301 1.22190 0.96919 0.81983 1.01010 1.21866 0.94530 1.01460 0.98256 1.22505 0.94662 0.95027 0.98074 0.85785 1.23095 0.99413 0.96221 0.97917 1.20983 0.96224 0.85870 0.90912 1.44418 1.78815 1.00994 1.08577 1.19000 1.36229 0.82577 0.95295 0.92193 1.25215 1.03532 1.00026 0.96518 1.70125 1.54678 1.32213 1.02533 0.85515 0.77433 0.82651 0.76570 1.21117 1.21548 1.21909 1.21035 0.94695 0.93055 0.87866 0.95714 1.21250 0.82363 1.00738 0.96202 0.88822 0.91926 0.91973 0.95810 0.89093 0.88655 0.87403 0.87962 0.87488 0.94302 0.89696 0.91552 0.97208 0.98587 0.94799 0.88718 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.82 113.37 1.23 1.65 16 2 O -0.40 -13.66 9.89 -130.07 -1.29 -14.94 16 3 C 0.08 2.44 2.29 29.84 0.07 2.51 16 4 H 0.13 2.47 6.93 -2.38 -0.02 2.45 16 5 C -0.16 -4.78 9.18 71.98 0.66 -4.12 16 6 C 0.51 20.22 7.07 87.66 0.62 20.84 16 7 O -0.58 -30.47 15.99 15.88 0.25 -30.22 16 8 N -0.59 -19.84 2.97 -823.09 -2.44 -22.28 16 9 C 0.10 2.14 5.59 86.20 0.48 2.62 16 10 C -0.12 -3.02 4.82 30.57 0.15 -2.88 16 11 C -0.08 -2.30 3.68 -9.21 -0.03 -2.33 16 12 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 13 C -0.13 -4.17 6.36 32.32 0.21 -3.97 16 14 C 0.18 8.90 4.60 86.71 0.40 9.30 16 15 N -0.60 -30.49 3.20 -674.11 -2.15 -32.65 16 16 C -0.20 -11.96 9.70 84.03 0.81 -11.14 16 17 H 0.06 3.77 6.51 -2.91 -0.02 3.76 16 18 C -0.06 -3.68 5.49 84.86 0.47 -3.22 16 19 N -0.94 -59.00 10.38 21.65 0.22 -58.77 16 20 Si 0.95 51.66 29.55 68.60 2.03 53.69 16 21 H -0.28 -15.01 7.11 99.48 0.71 -14.30 16 22 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 23 H -0.29 -16.60 7.11 99.48 0.71 -15.89 16 24 C 0.14 5.37 2.97 44.77 0.13 5.51 16 25 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 26 C 0.12 4.35 5.67 85.77 0.49 4.84 16 27 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.06 0.99 7.77 -2.39 -0.02 0.97 16 29 H 0.06 0.97 8.09 -2.39 -0.02 0.95 16 30 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.09 2.36 5.20 -2.38 -0.01 2.34 16 32 H 0.09 2.13 7.76 -2.39 -0.02 2.11 16 33 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 1.71 4.61 -2.39 -0.01 1.70 16 35 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.04 1.33 6.28 -2.39 -0.01 1.31 16 37 H 0.08 2.36 7.98 -2.39 -0.02 2.34 16 38 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.01 0.53 7.04 -2.39 -0.02 0.51 16 40 H 0.00 -0.23 7.56 -2.38 -0.02 -0.25 16 41 H 0.24 14.89 8.31 -92.71 -0.77 14.11 16 42 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 43 H 0.04 2.13 5.56 -2.39 -0.01 2.12 16 Total: -1.00 -85.46 326.28 3.29 -82.17 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 1.00 Total: 3.39 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 5.68 Total: 19.62 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -4.37 Total: -113.70 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -1.03 Total: -45.16 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.03 Total: 53.69 kcal Total: -85.46 3.29 -82.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084899598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.984 kcal (2) G-P(sol) polarization free energy of solvation -85.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds