Wall clock time and date at job start Tue Mar 31 2020 05:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.33676 * 2 1 4 4 C 1.54482 * 110.37022 * 237.62737 * 2 1 3 5 5 C 1.54504 * 104.06704 * 217.19138 * 4 2 1 6 6 C 1.54486 * 104.05910 * 0.02562 * 5 4 2 7 7 H 1.09004 * 110.46637 * 265.09504 * 6 5 4 8 8 C 1.50707 * 110.37092 * 142.81071 * 6 5 4 9 9 O 1.21278 * 119.99409 * 248.16448 * 8 6 5 10 10 N 1.34771 * 119.99797 * 68.16148 * 8 6 5 11 11 C 1.46504 * 119.99681 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47181 * 180.02562 * 11 10 8 13 13 H 1.09008 * 112.90646 * 316.24934 * 12 11 10 14 14 C 1.53772 * 113.61759 * 87.50019 * 12 11 10 15 15 C 1.53786 * 87.08149 * 139.98418 * 14 12 11 16 16 H 1.08994 * 113.69163 * 89.12703 * 15 14 12 17 17 N 1.46505 * 113.61353 * 220.02147 * 15 14 12 18 18 C 1.36931 * 119.99788 * 252.49526 * 17 15 14 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 15 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00121 * 22 20 18 24 24 H 1.48501 * 109.47062 * 210.00072 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99871 * 22 20 18 26 26 C 1.53778 * 113.61539 * 185.00448 * 12 11 10 27 27 O 1.44423 * 104.80659 * 23.97816 * 6 5 4 28 28 H 1.09004 * 109.46669 * 299.20127 * 1 2 3 29 29 H 1.08996 * 109.46867 * 59.20215 * 1 2 3 30 30 H 1.08995 * 109.47189 * 179.20763 * 1 2 3 31 31 H 1.09003 * 110.51058 * 335.84018 * 4 2 1 32 32 H 1.09006 * 110.50712 * 98.40993 * 4 2 1 33 33 H 1.08998 * 110.51380 * 241.36069 * 5 4 2 34 34 H 1.09001 * 110.51038 * 118.64735 * 5 4 2 35 35 H 0.96996 * 120.00565 * 0.02562 * 10 8 6 36 36 H 1.08996 * 109.46794 * 60.00304 * 11 10 8 37 37 H 1.08995 * 109.47162 * 300.00090 * 11 10 8 38 38 H 1.09001 * 113.61497 * 25.43757 * 14 12 11 39 39 H 1.09002 * 113.61585 * 254.53128 * 14 12 11 40 40 H 0.97000 * 119.99792 * 72.49320 * 17 15 14 41 41 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 42 42 H 1.08994 * 113.61872 * 105.46856 * 26 12 11 43 43 H 1.08999 * 113.68992 * 334.57083 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0678 -0.7754 -1.2231 5 6 3.3177 -1.5065 -0.6844 6 6 3.3870 -1.0869 0.8007 7 1 4.0524 -0.2325 0.9248 8 6 3.8527 -2.2409 1.6508 9 8 3.0889 -2.7635 2.4346 10 7 5.1178 -2.6921 1.5399 11 6 5.5703 -3.8143 2.3659 12 6 7.0343 -4.1242 2.0473 13 1 7.2465 -4.1175 0.9781 14 6 8.0331 -3.3021 2.8786 15 6 8.8785 -4.5824 2.9842 16 1 9.5954 -4.7020 2.1719 17 7 9.4778 -4.7826 4.3060 18 6 10.8236 -4.6013 4.4821 19 1 11.4432 -4.3104 3.6468 20 6 11.3904 -4.7855 5.7358 21 7 10.6352 -5.1395 6.7539 22 14 13.2251 -4.5307 5.9778 23 1 13.4844 -3.1148 6.3426 24 1 13.7089 -5.4186 7.0654 25 1 13.9405 -4.8563 4.7178 26 6 7.5730 -5.3676 2.7743 27 8 2.0323 -0.7233 1.1451 28 1 -0.3633 0.5014 0.8971 29 1 -0.3633 0.5262 -0.8827 30 1 -0.3633 -1.0275 -0.0142 31 1 1.3275 -1.4936 -1.5757 32 1 2.3407 -0.0862 -2.0224 33 1 4.2109 -1.1787 -1.2163 34 1 3.1954 -2.5862 -0.7706 35 1 5.7287 -2.2738 0.9133 36 1 4.9585 -4.6911 2.1540 37 1 5.4759 -3.5512 3.4194 38 1 7.6318 -2.9639 3.8340 39 1 8.5173 -2.5043 2.3155 40 1 8.9212 -5.0435 5.0563 41 1 11.0314 -5.2685 7.6299 42 1 7.6859 -6.2372 2.1270 43 1 7.0467 -5.5953 3.7012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086202582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:28 Heat of formation + Delta-G solvation = -60.307907 kcal Electronic energy + Delta-G solvation = -21758.346815 eV Core-core repulsion = 18418.064458 eV Total energy + Delta-G solvation = -3340.282357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53471 -39.08550 -38.18110 -34.71850 -33.34470 -32.64662 -32.06207 -30.26775 -28.11380 -26.19709 -25.09681 -23.86711 -22.92230 -21.49374 -21.07354 -20.53338 -19.07342 -17.48885 -17.03278 -16.96504 -16.51252 -15.57256 -15.31250 -14.99125 -14.60588 -14.36084 -14.20674 -13.77569 -13.57276 -13.24591 -12.94926 -12.79277 -12.68421 -12.18434 -11.91122 -11.87134 -11.81735 -11.41623 -11.28089 -11.24039 -11.16328 -10.84195 -10.53755 -10.30699 -10.20709 -10.12166 -9.83891 -9.71073 -9.47081 -9.05264 -8.87456 -6.97070 -5.78780 -3.07733 2.49968 2.78249 3.42184 3.47109 3.49123 3.69679 4.11189 4.28433 4.45567 4.57293 4.57709 4.72891 4.86675 4.95975 4.97136 5.03449 5.07940 5.22074 5.26483 5.34876 5.45879 5.46199 5.49500 5.55087 5.66233 5.78873 5.81284 5.84035 5.92504 6.08416 6.23746 6.30151 6.34962 6.40244 6.48070 6.58424 6.81615 7.10478 7.42184 7.68163 8.15122 8.39691 9.50696 10.09104 10.43222 11.43567 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042806 B = 0.002464 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.961012 B =11360.257938 C =11388.270843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.065 3.935 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.144 4.144 6 C 0.058 3.942 7 H 0.094 0.906 8 C 0.514 3.486 9 O -0.522 6.522 10 N -0.722 5.722 11 C 0.133 3.867 12 C -0.127 4.127 13 H 0.088 0.912 14 C -0.161 4.161 15 C 0.166 3.834 16 H 0.075 0.925 17 N -0.713 5.713 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.142 4.142 27 O -0.341 6.341 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.400 0.600 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.061 0.939 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.550 9.649 -19.157 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.090 0.910 4 C -0.187 4.187 5 C -0.182 4.182 6 C -0.004 4.004 7 H 0.112 0.888 8 C 0.299 3.701 9 O -0.396 6.396 10 N -0.375 5.375 11 C 0.010 3.990 12 C -0.146 4.146 13 H 0.106 0.894 14 C -0.202 4.202 15 C 0.054 3.946 16 H 0.093 0.907 17 N -0.351 5.351 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.182 4.182 27 O -0.260 6.260 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.017 9.209 -18.338 26.658 hybrid contribution 1.248 0.399 -0.029 1.311 sum -15.769 9.609 -18.367 26.044 Atomic orbital electron populations 1.21797 0.92858 1.03174 1.02543 1.23085 0.95784 0.95444 0.84928 0.91031 1.23013 0.97467 0.99848 0.98381 1.22905 0.99426 1.02263 0.93642 1.22844 0.87198 0.96436 0.93912 0.88808 1.20168 0.82224 0.84297 0.83433 1.90738 1.53966 1.58029 1.36909 1.45947 1.12053 1.36107 1.43393 1.21462 0.94508 0.87929 0.95097 1.22640 0.92341 0.99986 0.99638 0.89353 1.23958 0.97822 0.99435 0.99020 1.21520 0.91061 0.92186 0.89876 0.90669 1.42418 1.06326 1.81138 1.05195 1.19297 0.84619 1.39207 0.94444 0.91104 1.24781 0.98000 1.02309 0.95888 1.69662 1.34375 1.53610 1.00314 0.86186 0.85148 0.77493 0.77325 1.21706 1.21759 1.20742 1.23450 0.99073 0.95788 0.99913 1.89309 1.24911 1.74223 1.37534 0.91634 0.91051 0.91617 0.90210 0.90116 0.89470 0.90052 0.76617 0.91697 0.91104 0.90317 0.92774 0.78048 0.93431 0.91990 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.52 37.16 0.35 -0.66 16 2 C 0.07 0.52 3.92 -25.95 -0.10 0.42 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.15 -0.93 6.63 -25.16 -0.17 -1.09 16 5 C -0.14 -1.01 6.62 -25.16 -0.17 -1.18 16 6 C 0.06 0.58 3.71 -27.10 -0.10 0.48 16 7 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 8 C 0.51 6.84 7.07 -10.98 -0.08 6.76 16 9 O -0.52 -9.53 16.56 -13.63 -0.23 -9.76 16 10 N -0.72 -8.03 5.56 -60.29 -0.33 -8.37 16 11 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 12 C -0.13 -1.65 3.75 -89.81 -0.34 -1.98 16 13 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 14 C -0.16 -2.62 7.43 -25.92 -0.19 -2.81 16 15 C 0.17 3.16 4.48 -67.11 -0.30 2.86 16 16 H 0.08 1.42 8.10 -51.93 -0.42 0.99 16 17 N -0.71 -17.74 5.40 -52.63 -0.28 -18.03 16 18 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 22 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C -0.14 -2.24 7.39 -25.92 -0.19 -2.43 16 27 O -0.34 -4.22 10.61 -54.42 -0.58 -4.80 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.64 7.86 -51.93 -0.41 0.23 16 35 H 0.40 3.24 8.47 -40.82 -0.35 2.89 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 38 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.39 10.25 7.92 -40.82 -0.32 9.93 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.35 8.08 -51.93 -0.42 0.94 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -34.11 353.28 -9.29 -43.39 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.34 Total: 7.75 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.55 Total: -5.29 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.11 Total: -53.89 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.80 Total: -14.56 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.11 -9.29 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086202582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.916 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds