Wall clock time and date at job start Tue Mar 31 2020 05:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.33676 * 2 1 4 4 C 1.54482 * 110.37022 * 237.62737 * 2 1 3 5 5 C 1.54504 * 104.06704 * 217.19138 * 4 2 1 6 6 C 1.54486 * 104.05910 * 0.02562 * 5 4 2 7 7 H 1.09004 * 110.46637 * 265.09504 * 6 5 4 8 8 C 1.50707 * 110.37092 * 142.81071 * 6 5 4 9 9 O 1.21278 * 119.99409 * 248.16448 * 8 6 5 10 10 N 1.34771 * 119.99797 * 68.16148 * 8 6 5 11 11 C 1.46504 * 119.99681 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47181 * 180.02562 * 11 10 8 13 13 H 1.09008 * 112.90646 * 316.24934 * 12 11 10 14 14 C 1.53772 * 113.61759 * 87.50019 * 12 11 10 15 15 C 1.53786 * 87.08149 * 139.98418 * 14 12 11 16 16 H 1.08994 * 113.69163 * 89.12703 * 15 14 12 17 17 N 1.46505 * 113.61353 * 220.02147 * 15 14 12 18 18 C 1.36931 * 119.99788 * 252.49526 * 17 15 14 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 15 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00121 * 22 20 18 24 24 H 1.48501 * 109.47062 * 210.00072 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99871 * 22 20 18 26 26 C 1.53778 * 113.61539 * 185.00448 * 12 11 10 27 27 O 1.44423 * 104.80659 * 23.97816 * 6 5 4 28 28 H 1.09004 * 109.46669 * 299.20127 * 1 2 3 29 29 H 1.08996 * 109.46867 * 59.20215 * 1 2 3 30 30 H 1.08995 * 109.47189 * 179.20763 * 1 2 3 31 31 H 1.09003 * 110.51058 * 335.84018 * 4 2 1 32 32 H 1.09006 * 110.50712 * 98.40993 * 4 2 1 33 33 H 1.08998 * 110.51380 * 241.36069 * 5 4 2 34 34 H 1.09001 * 110.51038 * 118.64735 * 5 4 2 35 35 H 0.96996 * 120.00565 * 0.02562 * 10 8 6 36 36 H 1.08996 * 109.46794 * 60.00304 * 11 10 8 37 37 H 1.08995 * 109.47162 * 300.00090 * 11 10 8 38 38 H 1.09001 * 113.61497 * 25.43757 * 14 12 11 39 39 H 1.09002 * 113.61585 * 254.53128 * 14 12 11 40 40 H 0.97000 * 119.99792 * 72.49320 * 17 15 14 41 41 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 42 42 H 1.08994 * 113.61872 * 105.46856 * 26 12 11 43 43 H 1.08999 * 113.68992 * 334.57083 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0678 -0.7754 -1.2231 5 6 3.3177 -1.5065 -0.6844 6 6 3.3870 -1.0869 0.8007 7 1 4.0524 -0.2325 0.9248 8 6 3.8527 -2.2409 1.6508 9 8 3.0889 -2.7635 2.4346 10 7 5.1178 -2.6921 1.5399 11 6 5.5703 -3.8143 2.3659 12 6 7.0343 -4.1242 2.0473 13 1 7.2465 -4.1175 0.9781 14 6 8.0331 -3.3021 2.8786 15 6 8.8785 -4.5824 2.9842 16 1 9.5954 -4.7020 2.1719 17 7 9.4778 -4.7826 4.3060 18 6 10.8236 -4.6013 4.4821 19 1 11.4432 -4.3104 3.6468 20 6 11.3904 -4.7855 5.7358 21 7 10.6352 -5.1395 6.7539 22 14 13.2251 -4.5307 5.9778 23 1 13.4844 -3.1148 6.3426 24 1 13.7089 -5.4186 7.0654 25 1 13.9405 -4.8563 4.7178 26 6 7.5730 -5.3676 2.7743 27 8 2.0323 -0.7233 1.1451 28 1 -0.3633 0.5014 0.8971 29 1 -0.3633 0.5262 -0.8827 30 1 -0.3633 -1.0275 -0.0142 31 1 1.3275 -1.4936 -1.5757 32 1 2.3407 -0.0862 -2.0224 33 1 4.2109 -1.1787 -1.2163 34 1 3.1954 -2.5862 -0.7706 35 1 5.7287 -2.2738 0.9133 36 1 4.9585 -4.6911 2.1540 37 1 5.4759 -3.5512 3.4194 38 1 7.6318 -2.9639 3.8340 39 1 8.5173 -2.5043 2.3155 40 1 8.9212 -5.0435 5.0563 41 1 11.0314 -5.2685 7.6299 42 1 7.6859 -6.2372 2.1270 43 1 7.0467 -5.5953 3.7012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086202582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:27 Heat of formation + Delta-G solvation = -84.228667 kcal Electronic energy + Delta-G solvation = -21759.384097 eV Core-core repulsion = 18418.064458 eV Total energy + Delta-G solvation = -3341.319639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40934 -40.19040 -39.31987 -36.08359 -35.06448 -33.28013 -32.82620 -32.06106 -29.20818 -27.16765 -26.45058 -25.68644 -23.63397 -22.43920 -22.08960 -21.52984 -20.45383 -19.06138 -18.33834 -17.72675 -17.36052 -16.74341 -16.47863 -16.34539 -15.75739 -15.68717 -15.22195 -14.89898 -14.75317 -14.55659 -14.23583 -13.50019 -13.41911 -13.23767 -13.22037 -13.04821 -12.91758 -12.73946 -12.63177 -12.49110 -12.20243 -12.07089 -11.84776 -11.66835 -11.57356 -11.52989 -11.12294 -10.98161 -10.81741 -10.61448 -10.12970 -8.97414 -7.94104 -5.22528 1.47488 1.49359 1.50361 1.57749 1.89423 2.57138 3.01022 3.37560 3.47584 3.62638 3.73205 3.75163 3.91854 3.92763 3.99435 4.16533 4.26256 4.29172 4.35878 4.42719 4.46854 4.55295 4.57962 4.74936 4.77782 4.92313 4.96374 4.98388 4.99622 5.03342 5.05512 5.18195 5.22898 5.26052 5.34325 5.42104 5.53225 5.74226 5.83672 6.28118 6.52817 7.19821 7.33381 8.12155 8.33561 9.29520 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042806 B = 0.002464 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.961012 B =11360.257938 C =11388.270843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 H 0.088 0.912 4 C -0.144 4.144 5 C -0.138 4.138 6 C 0.057 3.943 7 H 0.120 0.880 8 C 0.509 3.491 9 O -0.582 6.582 10 N -0.705 5.705 11 C 0.138 3.862 12 C -0.092 4.092 13 H 0.127 0.873 14 C -0.154 4.154 15 C 0.143 3.857 16 H 0.084 0.916 17 N -0.731 5.731 18 C -0.241 4.241 19 H 0.081 0.919 20 C -0.082 4.082 21 N -0.973 5.973 22 Si 0.974 3.026 23 H -0.288 1.288 24 H -0.298 1.298 25 H -0.266 1.266 26 C -0.139 4.139 27 O -0.386 6.386 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.419 0.581 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.080 0.920 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.906 11.007 -22.713 29.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.002 4.002 3 H 0.106 0.894 4 C -0.182 4.182 5 C -0.176 4.176 6 C -0.004 4.004 7 H 0.138 0.862 8 C 0.296 3.704 9 O -0.461 6.461 10 N -0.358 5.358 11 C 0.014 3.986 12 C -0.111 4.111 13 H 0.145 0.855 14 C -0.195 4.195 15 C 0.034 3.966 16 H 0.102 0.898 17 N -0.369 5.369 18 C -0.373 4.373 19 H 0.099 0.901 20 C -0.274 4.274 21 N -0.624 5.624 22 Si 0.803 3.197 23 H -0.216 1.216 24 H -0.225 1.225 25 H -0.190 1.190 26 C -0.178 4.178 27 O -0.305 6.305 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.257 0.743 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.202 0.798 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.356 10.602 -21.999 29.392 hybrid contribution 0.980 -0.007 1.017 1.413 sum -15.376 10.595 -20.982 28.088 Atomic orbital electron populations 1.21839 0.92687 1.02554 1.03322 1.23383 0.96139 0.96133 0.84529 0.89404 1.23028 0.96909 1.00046 0.98177 1.22954 1.01368 1.01724 0.91581 1.23022 0.86866 0.95657 0.94878 0.86247 1.20927 0.82029 0.84632 0.82854 1.90709 1.55657 1.60171 1.39613 1.45755 1.11895 1.35247 1.42922 1.21239 0.94678 0.88641 0.94039 1.22472 0.91081 0.96660 1.00921 0.85471 1.23732 0.98042 0.98856 0.98835 1.21976 0.92374 0.94792 0.87494 0.89834 1.42661 1.05590 1.81601 1.06999 1.19748 0.86001 1.36989 0.94520 0.90121 1.25629 1.02375 1.03491 0.95928 1.69832 1.36087 1.55988 1.00515 0.85123 0.80176 0.76982 0.77394 1.21558 1.22535 1.19036 1.23340 0.96995 0.97428 1.00044 1.89280 1.26192 1.75060 1.39982 0.92678 0.88379 0.92983 0.90522 0.87217 0.86015 0.91240 0.74325 0.91773 0.93890 0.92914 0.91002 0.79756 0.94161 0.90163 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.52 71.98 0.69 -1.21 16 2 C 0.05 0.78 3.92 31.10 0.12 0.90 16 3 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.14 -1.35 6.63 31.61 0.21 -1.14 16 5 C -0.14 -1.49 6.62 31.61 0.21 -1.29 16 6 C 0.06 1.03 3.71 30.36 0.11 1.14 16 7 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 8 C 0.51 13.20 7.07 87.66 0.62 13.82 16 9 O -0.58 -21.97 16.56 15.33 0.25 -21.72 16 10 N -0.70 -14.29 5.56 -463.06 -2.57 -16.86 16 11 C 0.14 3.47 5.51 86.38 0.48 3.95 16 12 C -0.09 -2.16 3.75 -10.27 -0.04 -2.20 16 13 H 0.13 2.12 8.14 -2.38 -0.02 2.10 16 14 C -0.15 -4.76 7.43 31.12 0.23 -4.52 16 15 C 0.14 5.29 4.48 45.52 0.20 5.50 16 16 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 17 N -0.73 -36.79 5.40 -320.43 -1.73 -38.52 16 18 C -0.24 -13.27 9.97 84.04 0.84 -12.43 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 20 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 21 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 22 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 C -0.14 -4.17 7.39 31.12 0.23 -3.94 16 27 O -0.39 -9.36 10.61 -130.63 -1.39 -10.75 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.79 8.12 -2.39 -0.02 0.78 16 31 H 0.08 0.77 7.86 -2.39 -0.02 0.75 16 32 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.93 7.86 -2.39 -0.02 0.91 16 35 H 0.42 5.22 8.47 -92.71 -0.79 4.44 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.34 7.84 -2.39 -0.02 1.33 16 38 H 0.05 1.92 7.90 -2.39 -0.02 1.90 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.37 20.44 7.92 -92.71 -0.73 19.70 16 41 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 Total: -1.00 -77.89 353.28 0.72 -77.17 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -0.52 Total: 28.51 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.37 Total: -5.71 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -4.02 Total: -115.69 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.13 Total: -32.46 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -77.89 0.72 -77.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086202582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.059 kcal (2) G-P(sol) polarization free energy of solvation -77.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds