Wall clock time and date at job start Tue Mar 31 2020 05:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.55301 * 2 1 4 4 C 1.54993 * 110.61944 * 237.11596 * 2 1 3 5 5 C 1.54811 * 102.09252 * 204.47608 * 4 2 1 6 6 C 1.54103 * 104.18741 * 20.88322 * 5 4 2 7 7 H 1.09009 * 109.87560 * 242.45346 * 6 5 4 8 8 C 1.50691 * 109.88124 * 121.45360 * 6 5 4 9 9 O 1.21278 * 120.00190 * 244.99862 * 8 6 5 10 10 N 1.34775 * 120.00270 * 64.99994 * 8 6 5 11 11 C 1.46504 * 120.00207 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.46983 * 179.97438 * 11 10 8 13 13 H 1.09002 * 112.85017 * 314.66585 * 12 11 10 14 14 C 1.53786 * 113.61503 * 85.86203 * 12 11 10 15 15 C 1.54049 * 86.98426 * 140.01654 * 14 12 11 16 16 H 1.09005 * 113.62125 * 220.02158 * 15 14 12 17 17 N 1.46504 * 113.68747 * 89.12986 * 15 14 12 18 18 C 1.36934 * 119.99954 * 107.47077 * 17 15 14 19 19 H 1.07997 * 120.00337 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99789 * 180.02562 * 18 17 15 21 21 N 1.31614 * 120.00082 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00167 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46876 * 89.99806 * 22 20 18 24 24 H 1.48492 * 109.47049 * 210.00092 * 22 20 18 25 25 H 1.48504 * 109.46794 * 330.00442 * 22 20 18 26 26 C 1.53781 * 113.61337 * 183.46996 * 12 11 10 27 27 O 1.43740 * 107.29496 * 2.02727 * 6 5 4 28 28 H 1.08994 * 109.47285 * 182.88198 * 1 2 3 29 29 H 1.09002 * 109.46891 * 302.88295 * 1 2 3 30 30 H 1.09005 * 109.46927 * 62.88379 * 1 2 3 31 31 H 1.08995 * 110.90804 * 86.28264 * 4 2 1 32 32 H 1.08996 * 110.90453 * 322.67501 * 4 2 1 33 33 H 1.09001 * 110.49050 * 262.20579 * 5 4 2 34 34 H 1.08997 * 110.59992 * 139.60923 * 5 4 2 35 35 H 0.96999 * 120.00146 * 359.97438 * 10 8 6 36 36 H 1.09000 * 109.47232 * 59.99775 * 11 10 8 37 37 H 1.08997 * 109.47041 * 299.99591 * 11 10 8 38 38 H 1.08992 * 113.61675 * 254.61398 * 14 12 11 39 39 H 1.09000 * 113.60973 * 25.51686 * 14 12 11 40 40 H 0.97002 * 119.99803 * 287.47074 * 17 15 14 41 41 H 0.97002 * 120.00515 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.61567 * 334.48261 * 26 12 11 43 43 H 1.09000 * 113.61379 * 105.30384 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4795 -1.2157 -0.7252 6 6 3.3839 -1.1266 0.8103 7 1 4.0873 -0.3818 1.1829 8 6 3.6888 -2.4698 1.4215 9 8 2.8270 -3.0695 2.0286 10 7 4.9192 -3.0048 1.2937 11 6 5.2154 -4.3110 1.8874 12 6 6.6706 -4.6845 1.5980 13 1 6.9564 -4.5022 0.5620 14 6 7.6678 -4.1160 2.6213 15 6 8.4048 -5.4657 2.5312 16 1 8.7687 -5.8297 3.4922 17 7 9.4269 -5.5094 1.4825 18 6 10.7542 -5.4932 1.8188 19 1 11.0476 -5.4477 2.8571 20 6 11.7225 -5.5340 0.8250 21 7 12.9982 -5.5179 1.1482 22 14 11.2150 -5.6119 -0.9710 23 1 11.0780 -4.2337 -1.5069 24 1 12.2486 -6.3440 -1.7461 25 1 9.9148 -6.3199 -1.0877 26 6 7.0610 -6.0818 2.1078 27 8 2.0384 -0.7369 1.1328 28 1 -0.3633 -1.0263 0.0517 29 1 -0.3633 0.5580 0.8630 30 1 -0.3633 0.4684 -0.9148 31 1 2.1510 -0.1447 -2.0951 32 1 1.4550 -1.6585 -1.4281 33 1 4.2407 -0.5316 -1.1003 34 1 3.6998 -2.2372 -1.0350 35 1 5.6084 -2.5254 0.8079 36 1 4.5549 -5.0639 1.4573 37 1 5.0595 -4.2639 2.9652 38 1 8.2481 -3.2740 2.2442 39 1 7.2274 -3.9235 3.5996 40 1 9.1633 -5.5499 0.5498 41 1 13.6750 -5.5468 0.4538 42 1 6.4550 -6.4258 2.9460 43 1 7.1503 -6.8261 1.3166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086481938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:30 Heat of formation + Delta-G solvation = -55.346481 kcal Electronic energy + Delta-G solvation = -22054.314234 eV Core-core repulsion = 18714.247021 eV Total energy + Delta-G solvation = -3340.067213 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59549 -39.17711 -38.27439 -34.79307 -33.33331 -32.64488 -32.09736 -30.67703 -28.27092 -26.35035 -25.20592 -23.55196 -22.75548 -21.75833 -21.60026 -20.51886 -18.69136 -17.74394 -17.50809 -16.91416 -16.54202 -15.52639 -15.37567 -14.83463 -14.68223 -14.39760 -14.24238 -13.79117 -13.60569 -13.48644 -12.89812 -12.75594 -12.70237 -12.52947 -12.11783 -12.06817 -11.84019 -11.59911 -11.39653 -11.30934 -11.24997 -10.95975 -10.55588 -10.40913 -10.28736 -10.09268 -9.75025 -9.64637 -9.48076 -9.09826 -8.95125 -7.34626 -5.83630 -3.19999 2.48376 2.77817 3.30817 3.33016 3.39517 3.63507 4.08897 4.31469 4.42710 4.51858 4.54125 4.74327 4.85888 4.91069 4.95492 4.98118 5.06689 5.11463 5.28386 5.34096 5.34982 5.40409 5.47037 5.47668 5.53287 5.67717 5.71519 5.79866 5.82288 5.89109 6.09788 6.20145 6.29437 6.44777 6.50699 6.58363 6.70538 6.85205 7.40210 7.94314 8.12407 8.36023 9.13687 9.85835 10.05068 11.34468 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.003072 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.631052 B = 9112.506641 C = 9741.445407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.073 0.927 4 C -0.149 4.149 5 C -0.149 4.149 6 C 0.061 3.939 7 H 0.095 0.905 8 C 0.510 3.490 9 O -0.525 6.525 10 N -0.724 5.724 11 C 0.132 3.868 12 C -0.123 4.123 13 H 0.089 0.911 14 C -0.167 4.167 15 C 0.173 3.827 16 H 0.071 0.929 17 N -0.730 5.730 18 C -0.247 4.247 19 H 0.092 0.908 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.149 4.149 27 O -0.345 6.345 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.402 0.598 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.082 0.918 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.316 10.787 -4.897 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.091 0.909 4 C -0.187 4.187 5 C -0.187 4.187 6 C -0.001 4.001 7 H 0.113 0.887 8 C 0.295 3.705 9 O -0.400 6.400 10 N -0.377 5.377 11 C 0.009 3.991 12 C -0.142 4.142 13 H 0.108 0.892 14 C -0.208 4.208 15 C 0.061 3.939 16 H 0.089 0.911 17 N -0.370 5.370 18 C -0.377 4.377 19 H 0.110 0.890 20 C -0.191 4.191 21 N -0.579 5.579 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.203 1.203 26 C -0.188 4.188 27 O -0.263 6.263 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.236 0.764 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.805 10.278 -4.129 25.352 hybrid contribution 0.293 0.296 -1.805 1.852 sum -22.512 10.574 -5.934 25.569 Atomic orbital electron populations 1.21767 0.92828 1.03329 1.02426 1.23222 0.95632 0.95233 0.84835 0.90884 1.23194 0.95766 1.01102 0.98631 1.22951 0.98820 1.03866 0.93037 1.22601 0.87344 0.94766 0.95391 0.88720 1.20431 0.82478 0.87089 0.80517 1.90714 1.46178 1.62206 1.40899 1.45986 1.12472 1.22008 1.57204 1.21474 0.96082 0.83200 0.98327 1.22758 0.92368 0.98804 1.00286 0.89244 1.23900 0.98012 1.01306 0.97540 1.21053 0.87074 0.92730 0.93046 0.91063 1.42512 1.02695 1.88721 1.03051 1.19116 0.80332 1.43208 0.95023 0.89010 1.24687 0.95061 1.01887 0.97428 1.69694 0.98868 1.57133 1.32193 0.86560 0.77555 0.77757 0.86716 1.21065 1.21640 1.20328 1.23458 0.99153 0.95161 1.01042 1.89024 1.25893 1.73005 1.38367 0.91518 0.91709 0.91004 0.89742 0.90124 0.89361 0.89796 0.76418 0.91795 0.91320 0.91296 0.90887 0.80537 0.92961 0.89971 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.65 37.16 0.36 -0.68 16 2 C 0.07 0.56 3.98 -25.68 -0.10 0.46 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.15 -1.04 6.59 -24.72 -0.16 -1.20 16 5 C -0.15 -1.11 6.61 -25.20 -0.17 -1.27 16 6 C 0.06 0.62 3.84 -27.31 -0.10 0.51 16 7 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 8 C 0.51 6.70 6.95 -10.99 -0.08 6.62 16 9 O -0.52 -9.25 16.53 -14.02 -0.23 -9.48 16 10 N -0.72 -8.17 5.53 -60.29 -0.33 -8.50 16 11 C 0.13 1.65 5.50 -4.04 -0.02 1.63 16 12 C -0.12 -1.66 3.63 -89.80 -0.33 -1.98 16 13 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 14 C -0.17 -2.55 7.45 -25.77 -0.19 -2.74 16 15 C 0.17 3.14 4.57 -66.97 -0.31 2.84 16 16 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 17 N -0.73 -16.53 5.12 -52.50 -0.27 -16.80 16 18 C -0.25 -6.78 10.45 -15.06 -0.16 -6.94 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 20 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 21 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 22 Si 0.88 21.42 27.74 -169.99 -4.71 16.71 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 26 C -0.15 -2.17 7.39 -25.92 -0.19 -2.36 16 27 O -0.34 -4.22 10.44 -54.81 -0.57 -4.79 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.66 7.69 -51.93 -0.40 0.26 16 35 H 0.40 3.65 8.47 -40.82 -0.35 3.31 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 40 H 0.36 8.01 5.76 -40.82 -0.24 7.77 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -33.93 350.07 -8.92 -42.85 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.30 Total: 7.77 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.54 Total: -5.06 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.17 Total: -53.27 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.80 Total: -14.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.93 -8.92 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086481938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.501 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds