Wall clock time and date at job start Tue Mar 31 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99804 * 2 1 4 4 H 1.08997 * 109.47119 * 330.00293 * 3 2 1 5 5 C 1.53002 * 109.47038 * 90.00031 * 3 2 1 6 6 C 1.50693 * 109.47292 * 209.99643 * 3 2 1 7 7 O 1.21281 * 120.00222 * 349.94594 * 6 3 2 8 8 N 1.34779 * 120.00134 * 169.93954 * 6 3 2 9 9 C 1.47376 * 125.74055 * 354.78539 * 8 6 3 10 10 C 1.55416 * 106.73869 * 178.79526 * 9 8 6 11 11 H 1.09003 * 112.75897 * 146.41677 * 10 9 8 12 12 C 1.52915 * 106.56512 * 270.28310 * 10 9 8 13 13 C 1.51883 * 111.49348 * 169.08560 * 12 10 9 14 14 N 1.44351 * 113.48094 * 321.33239 * 13 12 10 15 15 C 1.36942 * 116.42243 * 187.47956 * 14 13 12 16 16 H 1.08001 * 119.99688 * 155.07041 * 15 14 13 17 17 C 1.38808 * 119.99916 * 335.06307 * 15 14 13 18 18 N 1.31625 * 120.00293 * 4.99129 * 17 15 14 19 19 Si 1.86795 * 119.99925 * 184.99014 * 17 15 14 20 20 H 1.48502 * 109.47455 * 90.00190 * 19 17 15 21 21 H 1.48507 * 109.47333 * 210.00491 * 19 17 15 22 22 H 1.48504 * 109.47348 * 330.00252 * 19 17 15 23 23 C 1.43980 * 127.14845 * 7.50091 * 14 13 12 24 24 C 1.49780 * 116.29989 * 2.84835 * 23 14 13 25 25 H 1.09002 * 109.25060 * 141.41042 * 24 23 14 26 26 C 1.47937 * 125.74047 * 174.47032 * 8 6 3 27 27 H 1.09002 * 109.47103 * 59.99939 * 1 2 3 28 28 H 1.09002 * 109.46894 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47600 * 299.99909 * 1 2 3 30 30 H 1.08998 * 109.47252 * 185.03890 * 5 3 2 31 31 H 1.09009 * 109.47323 * 305.03499 * 5 3 2 32 32 H 1.09000 * 109.46952 * 65.03510 * 5 3 2 33 33 H 1.09003 * 110.00630 * 298.11538 * 9 8 6 34 34 H 1.09000 * 110.00634 * 59.47788 * 9 8 6 35 35 H 1.08993 * 109.04604 * 290.44103 * 12 10 9 36 36 H 1.08996 * 109.03957 * 49.32134 * 12 10 9 37 37 H 1.08996 * 108.95578 * 199.98101 * 13 12 10 38 38 H 1.08997 * 108.01551 * 82.01573 * 13 12 10 39 39 H 0.97003 * 119.99879 * 179.97438 * 18 17 15 40 40 H 1.09001 * 108.11001 * 241.07624 * 23 14 13 41 41 H 1.08999 * 108.11148 * 124.62698 * 23 14 13 42 42 H 1.08995 * 110.56618 * 274.41383 * 26 8 6 43 43 H 1.08996 * 110.56139 * 37.27114 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7103 7 8 3.8331 0.1978 -1.0097 8 7 3.9771 2.4117 -1.0130 9 6 3.4470 3.7715 -0.8083 10 6 4.5522 4.7581 -1.2779 11 1 4.1454 5.6670 -1.7213 12 6 5.4281 5.0445 -0.0577 13 6 6.6972 5.7837 -0.4448 14 7 7.2692 5.3312 -1.6905 15 6 8.4961 5.8431 -2.0192 16 1 9.1527 5.2919 -2.6761 17 6 8.8956 7.0703 -1.5083 18 7 8.1391 7.6960 -0.6315 19 14 10.5069 7.8338 -2.0649 20 1 10.2648 8.6882 -3.2551 21 1 11.0678 8.6618 -0.9670 22 1 11.4694 6.7585 -2.4151 23 6 6.6914 4.4011 -2.6254 24 6 5.3210 3.8941 -2.2962 25 1 4.7369 3.8160 -3.2131 26 6 5.3306 2.5185 -1.6005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 2.5769 2.8004 1.4439 31 1 1.2719 1.7161 1.9818 32 1 2.9517 1.1295 1.9296 33 1 2.5439 3.9130 -1.4021 34 1 3.2284 3.9315 0.2475 35 1 4.8590 5.6387 0.6571 36 1 5.7071 4.1000 0.4093 37 1 7.4358 5.6577 0.3468 38 1 6.4564 6.8431 -0.5337 39 1 8.4185 8.5534 -0.2742 40 1 7.3595 3.5437 -2.7071 41 1 6.6486 4.8843 -3.6015 42 1 6.0904 2.4896 -0.8196 43 1 5.4963 1.7232 -2.3271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087901616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:48 Heat of formation + Delta-G solvation = -40.935875 kcal Electronic energy + Delta-G solvation = -23408.210946 eV Core-core repulsion = 20068.768623 eV Total energy + Delta-G solvation = -3339.442322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.48928 -38.87009 -37.39264 -35.65927 -32.92761 -31.74540 -31.41177 -29.96096 -27.84951 -27.05485 -25.87177 -24.17099 -23.14398 -21.94609 -21.46885 -19.42345 -17.93422 -17.40764 -17.16374 -16.36514 -15.93640 -15.42059 -15.29927 -15.00052 -14.51414 -13.99386 -13.85783 -13.72017 -13.21299 -13.08999 -12.98755 -12.81868 -12.47902 -12.33577 -12.22936 -11.96229 -11.76580 -11.37432 -11.28094 -10.89598 -10.75867 -10.48059 -10.22320 -10.18580 -10.17191 -9.75197 -9.71400 -9.57145 -9.42536 -8.53169 -8.40675 -6.69063 -5.57790 -3.21653 2.62621 2.71515 3.37752 3.44232 3.45527 3.74794 4.36533 4.47183 4.64700 4.71812 4.79282 4.89375 5.02702 5.05838 5.10877 5.27793 5.32741 5.40131 5.41287 5.46023 5.54342 5.61788 5.68167 5.85032 5.91982 6.00338 6.02966 6.12298 6.22700 6.44060 6.56374 6.57502 6.72661 6.81154 6.83045 6.86791 7.56575 7.58337 7.84814 8.10258 8.20692 8.56360 9.34661 10.03595 10.28684 11.26705 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.044277 B = 0.003729 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.228977 B = 7507.015196 C = 7811.591642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.075 3.925 4 H 0.083 0.917 5 C -0.171 4.171 6 C 0.528 3.472 7 O -0.526 6.526 8 N -0.615 5.615 9 C 0.094 3.906 10 C -0.079 4.079 11 H 0.097 0.903 12 C -0.132 4.132 13 C 0.175 3.825 14 N -0.600 5.600 15 C -0.258 4.258 16 H 0.068 0.932 17 C 0.005 3.995 18 N -0.909 5.909 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.179 3.821 24 C -0.098 4.098 25 H 0.073 0.927 26 C 0.117 3.883 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.029 0.971 38 H 0.087 0.913 39 H 0.249 0.751 40 H 0.013 0.987 41 H 0.022 0.978 42 H 0.074 0.926 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.666 -7.342 2.185 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.013 3.987 4 H 0.101 0.899 5 C -0.229 4.229 6 C 0.315 3.685 7 O -0.401 6.401 8 N -0.351 5.351 9 C -0.029 4.029 10 C -0.098 4.098 11 H 0.115 0.885 12 C -0.170 4.170 13 C 0.051 3.949 14 N -0.326 5.326 15 C -0.387 4.387 16 H 0.086 0.914 17 C -0.192 4.192 18 N -0.556 5.556 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.052 3.948 24 C -0.117 4.117 25 H 0.091 0.909 26 C -0.005 4.005 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.030 0.970 41 H 0.040 0.960 42 H 0.093 0.907 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.364 -8.063 2.158 17.485 hybrid contribution 0.574 0.687 -0.186 0.914 sum -14.790 -7.377 1.973 16.645 Atomic orbital electron populations 1.22874 0.80774 1.03144 0.99999 1.88049 1.19512 1.25389 1.94961 1.21884 0.93459 0.86461 0.96877 0.89949 1.22252 1.03413 1.02513 0.94722 1.19962 0.86243 0.82944 0.79317 1.90710 1.67526 1.28918 1.52992 1.48650 1.18357 1.05426 1.62677 1.22704 0.97566 0.81742 1.00877 1.22050 0.94062 0.96796 0.96929 0.88450 1.21946 0.98857 1.00541 0.95685 1.20609 0.89597 0.98480 0.86257 1.42742 1.19877 1.50747 1.19200 1.19293 0.92864 0.99559 1.27005 0.91377 1.25194 0.98718 0.96533 0.98711 1.70088 1.37427 1.16343 1.31712 0.86220 0.82911 0.79272 0.77992 1.21370 1.21710 1.20588 1.19159 0.89975 0.92692 0.92929 1.21588 0.98512 0.93638 0.97966 0.90866 1.22396 0.82849 0.97730 0.97520 0.93901 0.89193 0.93836 0.90435 0.91202 0.91104 0.91865 0.91008 0.92348 0.93726 0.95287 0.89560 0.93925 0.96978 0.95979 0.90745 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.36 -4.74 9.90 -54.94 -0.54 -5.28 16 3 C 0.07 0.88 2.53 -27.89 -0.07 0.81 16 4 H 0.08 0.77 7.60 -51.93 -0.39 0.38 16 5 C -0.17 -1.69 9.41 37.16 0.35 -1.35 16 6 C 0.53 8.28 7.17 -10.99 -0.08 8.20 16 7 O -0.53 -10.47 16.78 -14.15 -0.24 -10.71 16 8 N -0.62 -8.99 3.34 -169.61 -0.57 -9.56 16 9 C 0.09 1.14 5.59 -2.28 -0.01 1.13 16 10 C -0.08 -1.20 3.60 -88.81 -0.32 -1.52 16 11 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 12 C -0.13 -2.32 4.83 -27.34 -0.13 -2.45 16 13 C 0.17 4.07 4.65 -5.75 -0.03 4.04 16 14 N -0.60 -14.59 3.25 -179.51 -0.58 -15.17 16 15 C -0.26 -6.95 9.42 -15.06 -0.14 -7.09 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 17 C 0.01 0.14 5.40 -17.43 -0.09 0.05 16 18 N -0.91 -25.33 9.54 55.49 0.53 -24.80 16 19 Si 0.91 21.46 29.56 -169.99 -5.02 16.43 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.18 3.63 5.75 -6.98 -0.04 3.59 16 24 C -0.10 -1.59 2.83 -91.04 -0.26 -1.85 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 C 0.12 1.89 5.71 -2.65 -0.02 1.87 16 27 H 0.04 0.31 8.09 -51.93 -0.42 -0.11 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.28 7.78 -51.93 -0.40 -0.12 16 30 H 0.08 0.70 5.76 -51.93 -0.30 0.40 16 31 H 0.07 0.55 7.78 -51.92 -0.40 0.14 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.77 5.55 -51.93 -0.29 0.49 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.79 6.71 -51.93 -0.35 0.44 16 37 H 0.03 0.76 7.76 -51.93 -0.40 0.36 16 38 H 0.09 2.25 5.91 -51.93 -0.31 1.95 16 39 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.01 0.26 7.81 -51.93 -0.41 -0.15 16 41 H 0.02 0.46 8.13 -51.93 -0.42 0.04 16 42 H 0.07 1.32 7.24 -51.93 -0.38 0.95 16 43 H 0.08 1.26 8.01 -51.93 -0.42 0.84 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -31.81 330.53 -8.16 -39.97 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.97 Total: -2.64 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 0.25 Total: 6.77 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.62 Total: -49.53 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.78 Total: -15.99 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.81 -8.16 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087901616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.968 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds