Wall clock time and date at job start Tue Mar 31 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00085 * 2 1 4 4 O 1.42890 * 109.47451 * 134.99496 * 3 2 1 5 5 C 1.42905 * 113.99966 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.46641 * 30.00814 * 5 4 3 7 7 C 1.52997 * 109.47264 * 270.00126 * 5 4 3 8 8 C 1.50699 * 109.46972 * 150.00185 * 5 4 3 9 9 O 1.21280 * 120.00220 * 5.00182 * 8 5 4 10 10 N 1.34771 * 120.00236 * 185.00174 * 8 5 4 11 11 C 1.46500 * 120.00367 * 180.02562 * 10 8 5 12 12 C 1.53004 * 109.46995 * 180.02562 * 11 10 8 13 13 C 1.53786 * 113.60954 * 274.13457 * 12 11 10 14 14 C 1.53955 * 87.01727 * 220.05049 * 13 12 11 15 15 N 1.46502 * 113.53807 * 270.81423 * 14 13 12 16 16 C 1.36936 * 120.00170 * 252.49400 * 15 14 13 17 17 H 1.08001 * 119.99606 * 0.02562 * 16 15 14 18 18 C 1.38803 * 120.00420 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99792 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00463 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46844 * 89.99844 * 20 18 16 22 22 H 1.48495 * 109.47255 * 209.99734 * 20 18 16 23 23 H 1.48498 * 109.46909 * 330.00087 * 20 18 16 24 24 C 1.53784 * 87.11459 * 25.36557 * 14 13 12 25 25 H 1.07993 * 120.00172 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.99311 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00412 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46522 * 14.99289 * 3 2 1 29 29 H 1.08994 * 109.46688 * 255.00220 * 3 2 1 30 30 H 1.09002 * 109.47153 * 179.97438 * 7 5 4 31 31 H 1.09001 * 109.46832 * 60.00108 * 7 5 4 32 32 H 1.09004 * 109.47261 * 300.00089 * 7 5 4 33 33 H 0.97004 * 120.00103 * 0.02562 * 10 8 5 34 34 H 1.09002 * 109.46993 * 299.99782 * 11 10 8 35 35 H 1.09000 * 109.47293 * 59.99836 * 11 10 8 36 36 H 1.08996 * 112.85047 * 45.33145 * 12 11 10 37 37 H 1.08996 * 113.61956 * 334.56586 * 13 12 11 38 38 H 1.09004 * 113.61465 * 105.47858 * 13 12 11 39 39 H 1.08999 * 113.74818 * 139.94438 * 14 13 12 40 40 H 0.96997 * 119.99929 * 72.49779 * 15 14 13 41 41 H 0.97006 * 119.99949 * 180.02562 * 19 18 16 42 42 H 1.09000 * 113.61580 * 220.09034 * 24 14 13 43 43 H 1.08995 * 113.61320 * 89.18452 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9083 2.4351 1.0320 6 1 3.2843 3.2948 0.7880 7 6 5.0705 2.3505 0.0405 8 6 4.4505 2.5885 2.4297 9 8 4.2695 1.7135 3.2498 10 7 5.1367 3.6979 2.7683 11 6 5.6643 3.8468 4.1269 12 6 6.3955 5.1855 4.2462 13 6 7.8660 5.1260 3.7997 14 6 8.1823 6.0425 4.9956 15 7 8.0920 7.4700 4.6787 16 6 9.2319 8.2216 4.5741 17 1 10.1975 7.7619 4.7249 18 6 9.1464 9.5740 4.2734 19 7 7.9697 10.1339 4.0881 20 14 10.7015 10.5992 4.1301 21 1 11.1849 10.5715 2.7263 22 1 10.4088 12.0003 4.5252 23 1 11.7468 10.0405 5.0247 24 6 6.9169 5.4785 5.6630 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9354 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3854 2.1161 0.2659 29 1 2.4755 1.4867 -0.9926 30 1 5.6665 3.2611 0.1007 31 1 4.6783 2.2395 -0.9704 32 1 5.6945 1.4906 0.2846 33 1 5.2813 4.3979 2.1125 34 1 4.8416 3.8177 4.8414 35 1 6.3582 3.0332 4.3384 36 1 5.8386 6.0126 3.8060 37 1 8.3075 4.1329 3.8820 38 1 8.0474 5.5922 2.8312 39 1 9.1037 5.7821 5.5165 40 1 7.2248 7.8828 4.5429 41 1 7.9100 11.0789 3.8775 42 1 6.3332 6.2287 6.1965 43 1 7.0985 4.5819 6.2555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101057427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:14 Heat of formation + Delta-G solvation = -35.157464 kcal Electronic energy + Delta-G solvation = -21568.869938 eV Core-core repulsion = 18229.678186 eV Total energy + Delta-G solvation = -3339.191752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11083 -38.74758 -37.85996 -34.67094 -34.36639 -33.25761 -31.56886 -30.08714 -27.39715 -26.55821 -25.08476 -24.28387 -23.47645 -21.69588 -20.69616 -20.16359 -18.42959 -17.58567 -17.39854 -17.06369 -16.06755 -15.87086 -15.22130 -15.12424 -14.77605 -14.32161 -14.15258 -13.68448 -13.57573 -13.16932 -13.09412 -12.90450 -12.66435 -12.55675 -12.23442 -11.94334 -11.76917 -11.40699 -11.26453 -11.06669 -10.86416 -10.50901 -10.35421 -10.20655 -10.07622 -9.83857 -9.71887 -9.58182 -9.38547 -9.01221 -8.90570 -7.03059 -5.83777 -3.12806 1.77892 2.57116 2.82058 3.39588 3.45221 3.46752 3.73515 4.44845 4.53142 4.60335 4.63344 4.78320 4.78993 4.96532 5.04163 5.06137 5.14099 5.21461 5.29111 5.39609 5.42714 5.50403 5.60514 5.68930 5.80491 5.85431 5.94047 6.09082 6.19835 6.20203 6.27099 6.35212 6.39422 6.56836 6.71631 6.78483 6.88118 7.01842 7.48738 7.66338 8.19608 8.35487 9.46186 10.03668 10.37884 11.38617 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031670 B = 0.002552 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.896243 B =10968.116850 C =11347.069624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.085 3.915 4 O -0.353 6.353 5 C 0.070 3.930 6 H 0.086 0.914 7 C -0.171 4.171 8 C 0.511 3.489 9 O -0.525 6.525 10 N -0.722 5.722 11 C 0.132 3.868 12 C -0.119 4.119 13 C -0.168 4.168 14 C 0.167 3.833 15 N -0.706 5.706 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.148 4.148 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.402 0.598 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.068 0.932 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.288 -16.281 -8.988 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.167 4.167 3 C 0.008 3.992 4 O -0.272 6.272 5 C 0.009 3.991 6 H 0.104 0.896 7 C -0.229 4.229 8 C 0.296 3.704 9 O -0.400 6.400 10 N -0.375 5.375 11 C 0.009 3.991 12 C -0.138 4.138 13 C -0.209 4.209 14 C 0.055 3.945 15 N -0.344 5.344 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.188 4.188 25 H 0.116 0.884 26 H 0.123 0.877 27 H 0.135 0.865 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.236 0.764 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.202 -16.972 -8.251 21.946 hybrid contribution 0.453 1.311 -0.754 1.579 sum -10.748 -15.661 -9.004 21.021 Atomic orbital electron populations 1.23843 0.95531 1.02331 1.00044 1.22707 0.95621 0.98135 1.00224 1.21669 0.88730 0.96217 0.92537 1.88077 1.44142 1.34685 1.60263 1.21913 0.94067 0.89587 0.93560 0.89587 1.22241 0.97920 1.03870 0.98837 1.20322 0.78713 0.82215 0.89179 1.90715 1.57125 1.40613 1.51545 1.45996 1.56059 1.20657 1.14761 1.21492 0.97614 0.97883 0.82098 1.22714 0.96303 0.95469 0.99332 1.23914 0.94570 1.00358 1.02091 1.21096 0.95174 0.85331 0.92925 1.42172 1.06841 1.02419 1.82998 1.19292 0.86838 0.90768 1.40399 0.90981 1.24767 0.96773 0.96898 1.02496 1.69663 1.21938 1.11685 1.54805 0.86163 0.82406 0.79728 0.77730 1.21692 1.21759 1.20687 1.23442 0.99677 1.00720 0.94911 0.88398 0.87718 0.86457 0.92589 0.92079 0.90562 0.91255 0.90990 0.76369 0.91802 0.91507 0.88891 0.91385 0.91504 0.91939 0.78125 0.93446 0.91301 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 14.31 29.01 0.42 -0.83 16 2 C -0.15 -1.24 9.89 -36.02 -0.36 -1.60 16 3 C 0.08 0.73 6.16 36.01 0.22 0.95 16 4 O -0.35 -4.28 9.51 -55.09 -0.52 -4.81 16 5 C 0.07 0.72 3.13 -27.88 -0.09 0.64 16 6 H 0.09 0.67 7.79 -51.93 -0.40 0.27 16 7 C -0.17 -1.41 9.48 37.16 0.35 -1.06 16 8 C 0.51 6.93 7.18 -10.99 -0.08 6.85 16 9 O -0.52 -9.46 16.51 -14.30 -0.24 -9.70 16 10 N -0.72 -8.64 5.52 -60.29 -0.33 -8.97 16 11 C 0.13 1.76 5.50 -4.04 -0.02 1.74 16 12 C -0.12 -1.73 3.62 -89.80 -0.33 -2.06 16 13 C -0.17 -2.71 7.44 -25.82 -0.19 -2.90 16 14 C 0.17 3.19 4.57 -67.02 -0.31 2.88 16 15 N -0.71 -17.05 5.31 -52.55 -0.28 -17.33 16 16 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 20 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C -0.15 -2.33 7.39 -25.91 -0.19 -2.52 16 25 H 0.10 0.59 7.90 -52.49 -0.41 0.17 16 26 H 0.10 0.59 8.06 -52.48 -0.42 0.16 16 27 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 28 H 0.06 0.43 7.81 -51.93 -0.41 0.02 16 29 H 0.06 0.41 7.87 -51.93 -0.41 0.01 16 30 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 31 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 3.97 8.26 -40.82 -0.34 3.63 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 36 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.38 9.82 7.90 -40.82 -0.32 9.50 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -32.73 363.19 -8.29 -41.03 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.28 Total: 9.21 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.82 Total: -5.07 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.11 Total: -53.04 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.76 Total: -14.51 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.73 -8.29 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101057427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.870 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds